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Vocabulary Final Exam
BIO 204-300 Dr. Shafer
286
Biology
Undergraduate 1
12/11/2006

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Term
DNA-
Definition
information needed to code for proteins
Term
protein-
Definition
most important macromolecules with a function
Term
organelle-
Definition
one of several formed bodies with specialized functions in a eukaryotic cell's cytoplasm
Term
biology-
Definition
the scientific study of life
Term
emergent properties-
Definition
new properties that emerge with each step upward in theherarchy of life, due to the arrangement and interactions of parts as complexity increases
Term
reductionism-
Definition
reducing complex systems to simpler components that are more manageable to study
Term
inductive reasoning-
Definition
generalizations are based on a large number of specific observations
Term
deductive reasoning-
Definition
specific results are predicted from a general premise
Term
systems biology-
Definition
aims to model the dynamic behavior of whole biological systems
Term
bioinformatics-
Definition
using computing power, software, and mathematical models to process and integrate biological info from large data sets
Term
technology-
Definition
application of scienctific knowledge for a certain purpose
Term
cell-
Definition
fundamental unit of life
Term
matter
Definition
anything that takes up space and has mass
Term
element
Definition
any substance that can't be broken down to any other substance
Term
compound
Definition
a subtance consisting of two or more elements in a fixed ratio
Term
atom-
Definition
the smallest unit of matter that retains the properties of an element
Term
neutrons-
Definition
neutral particle in the nucleus of an atom
Term
electrons-
Definition
subatomic particle with a negative charge
Term
protons-
Definition
subatomc particle with a postivie charge in the nucleus of an atom
Term
dalton-
Definition
a measure of mass for atoms and subatomic particles
Term
atomic number-
Definition
number of protons in the nucleus of an atom (subscript to the left)
Term
electron shell-
Definition
an energy level represented as the average distance an electron is away from the nucleus
Term
chemical bond-
Definition
an attraction between two atoms
Term
covalent bond-
Definition
two atoms share 1 or more valence electrons
Term
molecule-
Definition
two or more atoms held together by covalent bonds
Term
structural formula-
Definition
molecular notation where lines represent covalent bonds bewteen atoms
Term
ion-
Definition
an atom that gained or lost electrons and therefore has a charge
Term
ionic bond-
Definition
attraction bewteen two oppositely charged ions
Term
chemical reaction-
Definition
making and/or breaking chemical bonds, chemical chnages in matter
Term
electronegativity-
Definition
the attraction of an atom for the electrons of a covalent bond
Term
polar covalent bond-
Definition
a covalent bond between atoms that differ in electronegativity
Term
polar molecule-
Definition
a molecule with opposite charge on opposie sides (water)
Term
hydrogen bond-
Definition
a weak bond formed between a slightly positive hydrogen atom of a polar covalent bond in one molecule is attracted to the slightly negative atom of a polar covalent bond in another molecule
Term
hydration shell-
Definition
the sphere of water molecules around each dissolved ion
Term
hydrophilic-
Definition
having an affinity for water
Term
hydrophobic-
Definition
having an aversion to water
Term
hydrophobic interaction-
Definition
weak bond formed when molecules that do not mix with water coalesce to exclude the water
Term
molarity-
Definition
a common measure of solute concentration, number of moles of solute per liter of solution
Term
pH-
Definition
the measure of the concentraion of hydrogen ions in solution
Term
acid-
Definition
a substance that increases the hydrogen ion concetration of a solution
Term
base-
Definition
a substance that reduces the hydrogen ion concentration of a solution
Term
5'-cap-
Definition
the 5' end of a pre-mRNA molecule modified by the addition of a cap of guanine nucleotide
Term
A site-
Definition
holds the tRNA carrying the next amino acid to be added to the polypeptide chain
Term
acetyl-coA-
Definition
acetyl coenzyme A; the entry compound for the citric acid cycle in cellular respiration, formed from a fragment of pyruvate attached to a coenzyme
Term
activation energy-
Definition
the amount of energy that reactants must absorb before a chemical rxn will start
Term
active site-
Definition
the specific portion of an enzyme that attaches to the substrate by means of weak chemical bonds
Term
active transport-
Definition
the movement of a substance across a membrane against its concentration or electrochemical gradient with the help of energy input and specific transport proteins
Term
functional group
Definition
A specific configuration of atoms commonly attached to the carbon skeletons of organic molecules and usually involved in chemical reactions.
Term
hydroxyl group
Definition
A functional group consisting of a hydrogen atom joined to an oxygen atom by a polar covalent bond. Molecules possessing this group are soluble in water and are called alcohols.
Term
sulfhydryl group
Definition
A functional group consisting of a sulfur atom bonded to a hydrogen atom (--SH).
Term
phosphate group
Definition
A functional group important in energy transfer.
Term
amino group
Definition
A functional group that consists of a nitrogen atom bonded to two hydrogen atoms; can act as a base in solution, accepting a hydrogen ion and acquiring a charge of +1.
Term
carboxyl group
Definition
A functional group present in organic acids and consisting of a single carbon atom double-bonded to an oxygen atom and also bonded to a hydroxyl group.
Term
carbonyl group
Definition
A functional group present in aldehydes and ketones and consisting of a carbon atom double-bonded to an oxygen atom.
Term
macromolecule
Definition
A giant molecule formed by the joining of smaller molecules, usually by a condensation reaction. Polysaccharides, proteins, and nucleic acids are macromolecules.
Term
polymer
.
Definition
A long molecule consisting of many similar or identical monomers linked together
Term
monomer
Definition
The subunit that serves as the building block of a polymer.
Term
dehydration reaction
Definition
A chemical reaction in which two molecules covalently bond to each other with the removal of a water molecule.
Term
hydrolysis
Definition
A chemical process that lyses, or splits, molecules by the addition of water.
Term
amino acid
Definition
An organic molecule possessing both carboxyl and amino groups. Amino acids serve as the monomers of proteins.
Term
peptide bond
Definition
The covalent bond between two amino acid units, formed by a dehydration reaction.
Term
primary structure
Definition
The level of protein structure referring to the specific sequence of amino acids.
Term
secondary structure
Definition
The localized, repetitive coiling or folding of the polypeptide backbone of a protein due to hydrogen bond formation between peptide linkages.
Term
alpha helix quaternary structure
Definition
A spiral shape constituting one form of the secondary structure of proteins, arising from a specific hydrogen-bonding structure
Term
beta pleated sheet
Definition
One form of the secondary structure of proteins in which the polypeptide chain folds back and forth. Two regions of the chain lie parallel to each other and are held together by hydrogen bonds.
Term
tertiary structure
Definition
Irregular contortions of a protein molecule due to interactions of side chains involved in hydrophobic interactions, ionic bonds, hydrogen bonds, and disulfide bridges.
Term
quaternary structure
Definition
The particular shape of a complex, aggregate protein, defined by the characteristic three-dimensional arrangement of its constituent subunits, each a polypeptide.
Term
disulfide bridge
Definition
A strong covalent bond formed when the sulfur of one cysteine monomer bonds to the sulfur of another cysteine monomer.
Term
denaturation
Definition
a process in which a protein unravels and loses its native conformation, thereby becoming biologically inactive. In DNA, the separation of the two strands of the double helix. Denaturation occurs under extreme conditions of pH, salt concentration, and temperature.
Term
chaperonin
Definition
A protein molecule that assists the proper folding of other proteins.
Term
metabolism
Definition
The totality of an organism’s chemical reactions, consisting of catabolic and anabolic pathways.
Term
metabolic pathway
Definition
A series of chemical reactions that either builds a complex molecule (anabolic pathway) or breaks down a complex molecule into simpler compounds (catabolic pathway).
Term
catabolic pathway
Definition
A metabolic pathway that releases energy by breaking down complex molecules to simpler compounds.
Term
anabolic pathway
Definition
A metabolic pathway that synthesizes a complex molecule from simpler compounds.
Term
free energy
Definition
The portion of a system’s energy that can perform work when temperature and pressure are uniform throughout the system.
Term
exergonic reaction
Definition
A spontaneous chemical reaction, in which there is a net release of free energy.
Term
endergonic reaction
Definition
A non-spontaneous chemical reaction, in which free energy is absorbed from the surroundings.
Term
enzyme
Definition
A protein serving as a catalyst, a chemical agent that changes the rate of a reaction without being consumed by the reaction.
Term
catalyst
Definition
A chemical agent that changes the rate of a reaction without being consumed by the reaction.
Term
substrate
Definition
The reactant on which an enzyme works.
Term
enzyme-substrate complex
Definition
A temporary complex formed when an enzyme binds to its substrate molecule
Term
induced fit
Definition
The change in shape of the active site of an enzyme so that it binds more snugly to the substrate, induced by entry of the substrate.
Term
cofactor
Definition
Any non-protein molecule or ion that is required for the proper functioning of an enzyme. Cofactors can be permanently bound to the active site or may bind loosely with the substrate during catalysis.
Term
coenzyme
Definition
An organic molecule serving as a cofactor. Most vitamins function as coenzymes in important metabolic reactions.
Term
competitive inhibitor
Definition
A substance that reduces the activity of an enzyme by entering the active site in place of the substrate whose structure it mimics.
Term
non-competitive inhibitor
Definition
A substance that reduces the activity of an enzyme by binding to a location remote from the active site, changing its conformation so that it no longer binds to the substrate.
Term
allosteric regulation
Definition
The binding of a molecule to a protein that affects the function of the protein at a different site.
Term
feedback inhibition
Definition
A method of metabolic control in which the end product of a metabolic pathway acts as an inhibitor of an enzyme within that pathway.
Term
nucleic acid
Definition
A polymer (polynucleotide) consisting of many nucleotide monomers; serves as a blueprint for proteins and, through the actions of proteins, for all cellular activities. The two types are DNA and RNA.
Term
gene
Definition
A discrete unit of hereditary information consisting of a specific nucleotide sequence in DNA
Term
ribonucleic acid (RNA)
Definition
A type of nucleic acid consisting of nucleotide monomers with a ribose sugar and the nitrogenous bases adenine (A), cytosine (C), guanine (G), and uracil (U); usually single-stranded; functions in protein synthesis and as the genome of some viruses.
Term
nucleotide
Definition
the building block of a nucleic acid, consisting of a five-carbon sugar covalently bonded to a nitrogenous base and a phosphate group.
Term
pyrimidine
Definition
One of two types of nitrogenous bases found in nucleotides. Cytosine (C), thymine (T), and uracil (U) are pyrimidines.
Term
purine
Definition
One of two types of nitrogenous bases found in nucleotides. Adenine (A) and guanine (G) are purines.
Term
ribose
Definition
The sugar component of RNA.
Term
deoxyribose
Definition
The sugar component of DNA, having one less hydroxyl group than ribose, the sugar component of RNA.
Term
chromosome
Definition
A threadlike, gene-carrying structure found in the nucleus. Each chromosome consists of one very long DNA molecule and associated proteins. See chromatin.
Term
bacteriophage
Definition
A virus that infects bacteria;
Term
double helix
Definition
The form of native DNA, referring to its two adjacent polynucleotide strands wound into a spiral shape.
Term
antiparallel
Definition
The opposite arrangement of the sugar-phosphate backbones in a DNA double helix.
Term
replication fork
Definition
A Y-shaped region on a replicating DNA molecule where new strands are growing.
Term
semiconservative model
Definition
Type of DNA replication in which the replicated double helix consists of one old strand, derived from the old molecule, and one newly made strand.
Term
DNA polymerase
Definition
An enzyme that catalyzes the elongation of new DNA at a replication fork by the addition of nucleotides to the existing chain.
Term
helicase
Definition
An enzyme that untwists the double helix of DNA at the replication forks.
Term
single-strand binding protein
Definition
During DNA replication, molecules that line up along the unpaired DNA strands, holding them apart while the DNA strands serve as templates for the synthesis of complementary strands of DNA.
Term
topoisomerase
Definition
A protein that functions in DNA replication, helping to relieve strain in the double helix ahead of the replication fork.
Term
leading strand
Definition
The new continuous complementary DNA strand synthesized along the template strand in the mandatory 5’ ( 3’ direction.
Term
lagging strand
Definition
A discontinuously synthesized DNA strand that elongates in a direction away from the replication fork.
Term
Okazaki fragment
Definition
A short segment of DNA synthesized on a template strand during DNA replication. Many Okazaki fragments make up the lagging strand of newly synthesized DNA.
Term
DNA ligase
Definition
A linking enzyme essential for DNA replication; catalyzes the covalent bonding of the 3’ end of a new DNA fragment to the 5’ end of a growing chain.
Term
primer
Definition
A polynucleotide with a free 3´ end, bound by complementary base pairing to the template strand, that is elongated during DNA replication.
Term
primase
Definition
An enzyme that joins RNA nucleotides to make the primer.
Term
telomere
Definition
The protective structure at each end of a eukaryotic chromosome. Specifically, the tandemly repetitive DNA at the end of the chromosome’s DNA molecule. See also repetitive DNA.
Term
telomerase
Definition
An enzyme that catalyzes the lengthening of telomeres. The enzyme includes a molecule of RNA that serves as a template for new telomere segments.
Term
transcription
Definition
The synthesis of RNA on a DNA template.
Term
primary transcript
Definition
An initial RNA transcript; also called pre-mRNA when transcribed from a protein-coding gene.
Term
RNA processing
Definition
Modification of RNA before it leaves the nucleus, a process unique to eukaryotes.
Term
messenger RNA (mRNA)
Definition
A type of RNA, synthesized from DNA, that attaches to ribosomes in the cytoplasm and specifies the primary structure of a protein.
Term
translation
Definition
The synthesis of a polypeptide using the genetic information encoded in an mRNA molecule. There is a change of languagefrom nucleotides to amino acids.
Term
ribosome
Definition
the site of protein synthesis in the cytoplasm; consists of rRNA and protein molecules, which make up two subunits.
Term
RNA polymerase
Definition
An enzyme that links together the growing chain of ribonucleotides during transcription.
Term
promoter
Definition
A specific nucleotide sequence in DNA that binds RNA polymerase and indicates where to start transcribing RNA.
Term
poly-A tail
Definition
The modified end of the 3’ end of an mRNA molecule consisting of the addition of some 50 to 250 adenine nucleotides.
Term
intron
Definition
A noncoding, intervening sequence within a eukaryotic gene.
Term
exon
Definition
A coding region of a eukaryotic gene. Exons, which are expressed, are separated from each other by introns.
Term
spliceosome
Definition
A complex assembly that interacts with the ends of an RNA intron in splicing RNA, releasing the intron and joining the two adjacent exons.
Term
codon
Definition
A three-nucleotide sequence of DNA or mRNA that specifies a particular amino acid or termination signal; the basic unit of the genetic code.
Term
ribosomal RNA (rRNA)
Definition
The most abundant type of RNA, which together with proteins forms the structure of ribosomes. Ribosomes coordinate the sequential coupling of tRNA molecules to mRNA codons.
Term
transfer RNA (tRNA)
Definition
An RNA molecule that functions as an interpreter between nucleic acid and protein language by picking up specific amino acids and recognizing the appropriate codons in the mRNA.
Term
anticodon
Definition
A specialized base triplet at one end of a tRNA molecule that recognizes a particular complementary codon on an mRNA molecule.
Term
wobble
Definition
A violation of the base-pairing rules in that the third nucleotide (5’ end) of a tRNA anticodon can form hydrogen bonds with more than one kind of base in the third position (3’ end) of a codon.
Term
aminoacyl-tRNA synthetase
Definition
An enzyme that joins each amino acid to the correct tRNA.
Term
P site
Definition
One of a ribosome’s three binding sites for tRNA during translation. The P site holds the tRNA carrying the growing polypeptide chain. (P stands for peptidyl tRNA.)
Term
reading frame
Definition
The way a cell’s mRNA-translating machinery groups the mRNA nucleotides into codons.
Term
signal peptide
Definition
A stretch of amino acids on a polypeptide that targets the protein to a specific destination in a eukaryotic cell.
Term
operon
Definition
A unit of genetic function common in bacteria and phages, consisting of coordinately regulated clusters of genes with related functions.
Term
operator
Definition
In prokaryotic DNA, a sequence of nucleotides near the start of an operon to which an active repressor can attach. The binding of the repressor prevents RNA polymerase from attaching to the promoter and transcribing the genes of the operon.
Term
repressor
Definition
A protein that suppresses the transcription of a gene.
Term
corepressor
Definition
A small molecule that cooperates with a repressor protein to switch on operon off.
Term
inducer
Definition
A specific small molecule that inactivates the repressor in an operon.
Term
positive feedback
Definition
A physiological control mechanism in which a change in some variable triggers mechanisms that amplify the change.
Term
negative feedback
Definition
A primary mechanism of homeostasis, whereby a change in a physiological variable triggers a response that counteracts the initial fluctuation.
Term
cell differentiation
Definition
The structural and functional divergence of cells as they become specialized during a multicellular organism’s development; dependent on the control of gene expression.
Term
chromatin
Definition
The complex of DNA and proteins that makes up a eukaryotic chromosome. When the cell is not dividing, chromatin exists as a mass of very long, thin fibers that are not visible with a light microscope.
Term
histone
Definition
A small protein with a high proportion of positively charged amino acids that binds to the negatively charged DNA and plays a key role in its chromatin structure.
Term
nucleosome
Definition
The basic, bead-like unit of DNA packaging in eukaryotes, consisting of a segment of DNA wound around a protein core composed of two copies of each of four types of histone.
Term
histone acetylation
Definition
The attachment of acetyl groups to certain amino acids of histone proteins.
Term
transcription factor
Definition
A regulatory protein that binds to DNA and stimulates transcription of specific genes.
Term
enhancer
Definition
A DNA segment containing multiple control elements that may be located far away from the gene it regulates.
Term
recombinant DNA
Definition
A DNA molecule made in vitro with segments from different sources.
Term
genetic engineering
Definition
The direct manipulation of genes for practical purposes.
Term
biotechnology
Definition
The manipulation of living organisms or their components to produce useful products.
Term
restriction fragment
Definition
DNA segment resulting from cutting of DNA by a restriction enzyme.
Term
sticky end
Definition
A single-stranded end of a double-stranded DNA restriction fragment.
Term
plasmid
Definition
A small ring of DNA that carries accessory genes separate from those of a bacterial chromosome; also found in some eukaryotes, such as yeast.
Term
genomic library
Definition
A set of thousands of DNA segments from a genome, each carried by a plasmid, phage, or other cloning vector.
Term
complementary DNA (cDNA)
Definition
A DNA molecule made in vitro using mRNA as a template and the enzyme reverse transcriptase. A cDNA molecule therefore corresponds to a gene, but lacks the introns present in the DNA of the genome.
Term
polymerase chain reaction (PCR)
Definition
A technique for amplifying DNA in vitro by incubating with special primers, DNA polymerase molecules, and nucleotides.
Term
lipid
Definition
One of a family of compounds, including fats, phospholipids, and steroids, that are insoluble in water.
Term
phospholipid
Definition
A molecule that is a constituent of the inner bilayer of biological membranes, having a polar, hydrophilic head and a nonpolar, hydrophobic tail.
Term
fatty acid
Definition
A long carbon chain carboxylic acid. Fatty acids vary in length and in the number and location of double bonds; three fatty acids linked to a glycerol molecule form fat.
Term
amphipathic molecule
Definition
A molecule that has both a hydrophilic region and a hydrophobic region.
Term
selective permeability
Definition
A property of biological membranes that allows some substances to cross more easily than others.
Term
fluid mosaic model
Definition
The currently accepted model of cell membrane structure, which envisions the membrane as a mosaic of individually inserted protein molecules drifting laterally in a fluid bilayer of phospholipids.
Term
integral protein
Definition
Typically a transmembrane protein with hydrophobic regions that completely spans the hydrophobic interior of the membrane.
Term
peripheral protein
Definition
A protein appendage loosely bound to the surface of a membrane and not embedded in the lipid bilayer.
Term
cholesterol
Definition
A steroid that forms an essential component of animal cell membranes and acts as a precursor molecule for the synthesis of other biologically important steroids.
Term
glycoprotein
Definition
A protein covalently attached to a carbohydrate.
Term
transport protein
Definition
A transmembrane protein that helps a certain substance or class of closely related substances to cross the membrane.
Term
active transport
Definition
The movement of a substance across a biological membrane against its concentration or electrochemical gradient with the help of energy input and specific transport proteins.
Term
passive transport
Definition
The diffusion of a substance across a biological membrane.
Term
diffusion
Definition
The spontaneous tendency of a substance to move down its concentration gradient from a more concentrated to a less concentrated area.
Term
facilitated diffusion
Definition
The spontaneous passage of molecules and ions, bound to specific carrier proteins, across a biological membrane down their concentration gradients.
Term
gated channel
Definition
protein channel in a cell membrane that opens or closes in response to a particular stimulus.
Term
osmosis
Definition
The diffusion of water across a selectively permeable membrane.
Term
aquaporin
Definition
A transport protein in the plasma membrane of a plant or animal cell that specifically facilitates the diffusion of water across the membrane (osmosis).
Term
hypertonic
Definition
In comparing two solutions, referring to the one with a greater solute concentration.
Term
hypotonic
Definition
In comparing two solutions, referring to the one with a lower solute concentration.
Term
isotonic
Definition
Having the same solute concentration as another solution.
Term
turgid
Definition
Very firm. A walled cell become turgid if it has a greater solute concentration than its surroundings, resulting in entry of water.
Term
plasmolysis
Definition
A phenomenon in walled cells in which the cytoplasm shrivels and the plasma membrane pulls away from the cell wall when the cell loses water to a hypertonic environment.
Term
sodium-potassium pump
Definition
A special transport protein in the plasma membrane of animal cells that transports sodium out of the cell and potassium into the cell against their concentration gradients.
Term
electrochemical gradient
Definition
The diffusion gradient of an ion, representing a type of potential energy that accounts for both the concentration difference of the ion across a membrane and its tendency to move relative to the membrane potential.
Term
electrogenic pump
Definition
An ion transport protein that generates voltage across a membrane.
Term
cotransport
Definition
The coupling of the downhilldiffusion of one substance to the uphilltransport of another against its own concentration gradient.
Term
cotransport
Definition
The coupling of the downhilldiffusion of one substance to the uphilltransport of another against its own concentration gradient.
Term
cotransport
Definition
The coupling of the downhilldiffusion of one substance to the uphilltransport of another against its own concentration gradient.
Term
exocytosis
Definition
The cellular secretion of macromolecules by the fusion of vesicles with the plasma membrane.
Term
endocytosis
Definition
The cellular uptake of macromolecules and particulate substances by localized regions of the plasma membrane that surround the substance and pinch off to form an intracellular vesicle.
Term
phagocytosis
Definition
A type of endocytosis involving large, particulate substances, accomplished mainly by macrophages, neutrophils, and dendritic cells.
Term
pinocytosis
Definition
A type of endocytosis in which the cell ingests extracellular fluid and its dissolved solutes.
Term
receptor-mediated endocytosis
Definition
The movement of specific molecules into a cell by the inward budding of membranous vesicles containing proteins with receptor sites specific to the molecules being taken in; enables a cell to acquire bulk quantities of specific substances.
Term
ATP (adenosine triphosphate)
Definition
An adenine-containing nucleoside triphosphate that releases free energy when its phosphate bonds are hydrolyzed. This energy is used to drive endergonic reactions in cells.
Term
mitochondrion
Definition
(plural, mitochondria) An organelle in eukaryotic cells that serves as the site of cellular respiration.
Term
cellular respiration
Definition
The most prevalent and efficient catabolic pathway for the production of ATP, in which oxygen is consumed as a reactant along with the organic fuel.
Term
photosynthesis
Definition
The conversion of light energy to chemical energy that is stored in glucose or other organic compounds; occurs in plants, algae, and certain prokaryotes.
Term
chloroplast
Definition
An organelle found only in plants and photosynthetic protists that absorbs sunlight and uses it to drive the synthesis of organic compounds from carbon dioxide and water.
Term
fat (triacylglycerol)
Definition
A biological compound consisting of three fatty acids linked to one glycerol molecule.
Term
carbohydrate
Definition
A sugar (monosaccharide) or one of its dimers (disaccharides) or polymers (polysaccharides).
Term
monosaccharide
Definition
The simplest carbohydrate, active alone or serving as a monomer for disaccharides and polysaccharides. Also known as simple sugars, the molecular formulas of monosaccharides are generally some multiple of CH2O.
Term
disaccharide
Definition
A double sugar, consisting of two monosaccharides joined by dehydration synthesis.
Term
polysaccharide
Definition
A polymer of up to over a thousand monosaccharides, formed by dehydration reactions.
Term
starch
Definition
A storage polysaccharide in plants consisting entirely of glucose.
Term
glycogen
Definition
An extensively branched glucose storage polysaccharide found in the liver and muscle of animals; the animal equivalent of starch.
Term
crista
Definition
(plural, cristae) An infolding of the inner membrane of a mitochondrion that houses the electron transport chain and the enzyme catalyzing the synthesis of ATP.
Term
mitochondrial matrix
Definition
The compartment of the mitochondrion enclosed by the inner membrane and containing enzymes and substrates for the Krebs cycle.
Term
oxidation
Definition
The loss of electrons from a substance involved in a redox reaction.
Term
reduction
Definition
The addition of electrons to a substance involved in a redox reaction.
Term
redox reaction
Definition
A chemical reaction involving the transfer of one or more electrons from one reactant to another; also called oxidation-reduction reaction.
Term
NAD+
Definition
Nicotinamide adenine dinucleotide, a coenzyme present in all cells that helps enzymes transfer electrons during the redox reactions of metabolism.
Term
glycolysis
Definition
The splitting of glucose into pyruvate. Glycolysis is the one metabolic pathway that occurs in all living cells, serving as the starting point for fermentation or aerobic respiration.
Term
citric acid cycle
Definition
A chemical cycle involving eight steps that completes the metabolic breakdown of glucose molecules to carbon dioxide; occurs within the mitochondrion; the second major stage in cellular respiration.
Term
electron transport chain
Definition
A sequence of electron carrier molecules (membrane proteins) that shuttle electrons during the redox reactions that release energy used to make ATP.
Term
substrate-level phosphorylation
Definition
The formation of ATP by directly transferring a phosphate group to ADP from an intermediate substrate in catabolism.
Term
chemiosmosis
Definition
An energy-coupling mechanism that uses energy stored in the form of a hydrogen ion gradient across a membrane to drive cellular work, such as the synthesis of ATP. Most ATP synthesis in cells occurs by chemiosmosis.
Term
ATP synthase
Definition
A cluster of several membrane proteins found in the mitochondrial crista (and bacterial plasma membrane) that function in chemiosmosis with adjacent electron transport chains, using the energy of a hydrogen ion concentration gradient to make ATP. ATP synthases provide a port through which hydrogen ions diffuse into the matrix of a mitrochondrion.
Term
oxidative phosphorylation
Definition
The production of ATP using energy derived from the redox reactions of an electron transport chain.
Term
cytochrome
Definition
An iron-containing protein, a component of electron transport chains in mitochondria and chloroplasts.
Term
fermentation
Definition
A catabolic process that makes a limited amount of ATP from glucose without an electron transport chain and that produces a characteristic end product, such as ethyl alcohol or lactic acid.
Term
beta oxidation
Definition
A metabolic sequence that breaks fatty acids down to two-carbon fragments that enter the citric acid cycle as acetyl CoA.
Term
signal transduction pathway
Definition
A mechanism linking a mechanical or chemical stimulus to a specific cellular response.
Term
neurotransmitter
Definition
A chemical messenger released from the synaptic terminal of a neuron at a chemical synapse that diffuses across the synaptic cleft and binds to and stimulates the postsynaptic cell.
Term
hormone
Definition
In multicellular organisms, one of many types of circulating chemical signals that are formed in specialized cells, travel in body fluids, and act on specific target cells to change their functioning.
Term
ligand
Definition
A molecule that binds specifically to a receptor site of another molecule.
Term
G protein
Definition
A GTP-binding protein that relays signals from a plasma membrane signal receptor, known as a G-protein-linked receptor, to other signal transduction proteins inside the cell. When such a receptor is activated, it in turn activates the G protein, causing it to bind a molecule of GTP in place of GDP. Hydrolysis of the bound GTP to GDP inactivates the G protein.
Term
receptor tyrosine kinase
Definition
A receptor protein in the plasma membrane that responds to the binding of a signal molecule by catalyzing the transfer of phosphate groups from ATP to tyrosines on the cytoplasmic side of the receptor. The phosphorylated tyrosines activate other signal transduction proteins within the cell.
Term
protein kinase
Definition
An enzyme that transfers phosphate groups from ATP to a protein.
Term
second messenger
Definition
A small, nonprotein, water-soluble molecule or ion, such as calcium ion or cyclic AMP, that relays a signal to a cell’s interior in response to a signal received by a signal receptor protein.
Term
karyotype
Definition
A display of the chromosome pairs of a cell arranged by size and shape.
Term
homologous chromosomes
Definition
Chromosome pairs of the same length, centromere position, and staining pattern that possess genes for the same characters at corresponding loci. One homologous chromosome is inherited from the organism’s father, the other from the mother.
Term
homologous chromosomes
Definition
Chromosome pairs of the same length, centromere position, and staining pattern that possess genes for the same characters at corresponding loci. One homologous chromosome is inherited from the organism’s father, the other from the mother.
Term
diploid cell
Definition
A cell containing two sets of chromosomes (2n), one set inherited from each parent.
Term
haploid cell
Definition
A cell containing only one set of chromosomes (n).
Term
asexual reproduction
Definition
A type of reproduction involving only one parent that produces genetically identical offspring by budding or by the division of a single cell or the entire organism into two or more parts.
Term
sexual reproduction
Definition
A type of reproduction in which two parents give rise to offspring that have unique combinations of genes inherited from the gametes of the two parents.
Term
clone
Definition
A lineage of genetically identical individuals or cells.
Term
fertilization
Definition
The union of haploid gametes to produce a diploid zygote.
Term
gamete
Definition
A haploid cell, such as an egg or sperm. Gametes unite during sexual reproduction to produce a diploid zygote.
Term
zygote
Definition
The diploid product of the union of haploid gametes in conception; a fertilized egg.
Term
meiosis
Definition
A two-stage type of cell division in sexually reproducing organisms that results in cells with half the chromosome number of the original cell.
Term
synapsis
Definition
The pairing of replicated homologous chromosomes during prophase I of meiosis.
Term
tetrad
Definition
A paired set of homologous chromosomes, each composed of two sister chromatids. Tetrads form during prophase I of meiosis.
Term
crossing over
Definition
The reciprocal exchange of genetic material between nonsister chromatids during prophase I of meiosis.
Term
chiasma
Definition
(plural, chiasmata) The X-shaped, microscopically visible region representing homologous chromatids that have exchanged genetic material through crossing over during meiosis.
Term
primary oocyte
Definition
A diploid cell, in prophase I of meiosis, that can be hormonally triggered to develop into an ovum.
Term
secondary oocyte
Definition
A haploid cell resulting from meiosis I in oogenesis, which will become an ovum after meiosis II.
Term
monohybrid
Definition
An organism that is heterozygous with respect to a single gene of interest. All the offspring from a cross between parents homozygous for different alleles are monohybrids. For example, parents of genotypes AA and aa produce a monohybrid of genotype Aa.
Term
dihybrid
Definition
An organism that is heterozygous with respect to two genes of interest. All the offspring from a cross between parents doubly homozygous for different alleles are dihybrids. For example, parents of genotypes AABB and aabb produce a dihybrid of genotype AaBb.
Term
P generation
Definition
The parent individuals from which offspring are derived in studies of inheritance; P stands for parental.
Term
F1 generation
Definition
The first filial, or hybrid, offspring in a series of genetic crosses.
Term
F2 generation
Definition
Offspring resulting from interbreeding of the hybrid F1 generation.
Term
dominant allele
Definition
An allele that is fully expressed in the phenotype of a heterozygote.
Term
recessive allele
Definition
An allele whose phenotypic effect is not observed in a heterozygote.
Term
alleles
Definition
Alternative versions of a gene that produce distinguishable phenotypic effects.
Term
locus
Definition
(plural, loci) A specific place along the length of a chromosome where a given gene is located.
Term
homozygous
Definition
Having two identical alleles for a given gene.
Term
heterozygous
Definition
Having two different alleles for a given gene.
Term
phenotype
Definition
The physical and physiological traits of an organism, that are determined by its genetic makeup.
Term
genotype
Definition
The genetic makeup, or set of alleles, of an organism.
Term
testcross
Definition
Breeding of an organism of unknown genotype with a homozygous recessive individual to determine the unknown genotype. The ratio of phenotypes in the offspring determines the unknown genotype.
Term
linked genes
Definition
Genes located close enough together on a chromosome to be usually inherited together.
Term
recombinant chromosome
Definition
A chromosome created when crossing over combines the DNA from two parents into a single chromosome.
Term
autosome
Definition
A chromosome that is not directly involved in determining sex, as opposed to a sex chromosome.
Term
sex-linked gene
Definition
A gene located on a sex chromosome.
Term
chromosome
Definition
A threadlike, gene-carrying structure found in the nucleus. Each chromosome consists of one very long DNA molecule and associated proteins. See chromatin.
Term
chromatin
Definition
The complex of DNA and proteins that makes up a eukaryotic chromosome. When the cell is not dividing, chromatin exists as a mass of very long, thin fibers that are not visible with a light microscope.
Term
sister chromatids
Definition
Replicated forms of a chromosome joined together by the centromere and eventually separated during mitosis or meiosis II.
Term
mitosis
Definition
A process of nuclear division in eukaryotic cells conventionally divided into five stages: prophase, prometaphase, metaphase, anaphase, and telophase. Mitosis conserves chromosome number by equally allocating replicated chromosomes to each of the daughter nuclei.
Term
cytokinesis
Definition
The division of the cytoplasm to form two separate daughter cells immediately after mitosis.
Term
cell cycle
Definition
An ordered sequence of events in the life of a eukaryotic cell, from its origin in the division of a parent cell until its own division into two; composed of the M, G1, S, and G2 phases.
Term
interphase
Definition
The period in the cell cycle when the cell is not dividing. During interphase, cellular metabolic activity is high, chromosomes and organelles are duplicated, and cell size may increase. Interphase accounts for 90% of the cell cycle.
Term
S phase
Definition
The synthesis phase of the cell cycle; the portion of interphase during which DNA is replicated.
Term
G1 phase
Definition
The first growth phase of the cell cycle, consisting of the portion of interphase before DNA synthesis begins.
Term
G2 phase
Definition
The second growth phase of the cell cycle, consisting of the portion of interphase after DNA synthesis occurs.
Term
prophase
Definition
The first stage of mitosis, in which the chromatin is condensing and the mitotic spindle begins to form, but the nucleolus and nucleus are still intact.
Term
prometaphase
Definition
The second stage of mitosis, in which discrete chromosomes consisting of identical sister chromatids appear, the nuclear envelope fragments, and the spindle microtubules attach to the kinetochores of the chromosomes.
Term
metaphase
Definition
The third stage of mitosis, in which the spindle is complete and the chromosomes, attached to microtubules at their kinetochores, are all aligned at the metaphase plate.
Term
anaphase
Definition
The fourth stage of mitosis, in which the chromatids of each chromosome have separated and the daughter chromosomes are moving to the poles of the cell.
Term
telophase
Definition
The fifth and final stage of mitosis, in which daughter nuclei are forming and cytokinesis has typically begun.
Term
centromere
Definition
The centralized region joining two sister chromatids.
Term
kinetochore
Definition
A specialized region on the centromere that links each sister chromatid to the mitotic spindle.
Term
metaphase plate
Definition
An imaginary plane during metaphase in which the centromeres of all the duplicated chromosomes are located midway between the two poles.
Term
cleavage furrow
Definition
The first sign of cleavage in an animal cell; a shallow groove in the cell surface near the old metaphase plate.
Term
cell plate
Definition
A double membrane across the midline of a dividing plant cell, between which the new cell wall forms during cytokinesis.
Term
cyclin
Definition
A regulatory protein whose concentration fluctuates cyclically
Term
growth factor
Definition
A protein that must be present in the extracellular environment (culture medium or animal body) for the growth and normal development of certain types of cells; a local regulator that acts on nearby cells to stimulate cell proliferation and differentiation.
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