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Virology
Molecular biology
33
Biology
Undergraduate 4
01/30/2011

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Term
Adenovirus
Definition
naked capsid-cubic
large DNA virus
protein inhibits signal trandsuction pathway for interferon
+-DNA
use of protein primer for end problem→add terminal protein + viral DNA pol→ dCTP? →dNTP’s displacement synthesis
blocks activation of PKR
Term
arenavirus
Definition
LCM
+-ambisense
Term
bacteriophage T4
Definition
code for own DNA polymerase
concatemers by recombination by two concatemer dimers
early-RNA pol + alt protein + mod protein
middle-RNA w/adp ribose + mot A protein
late-RNA + T4 sigma factor
large DNA virus
+-DNA virus
Term
bacteriophage T7
Definition
code for own DNA pol
terminal redundancy to form concatemers
+-DNA virus
Term
bacteriophage phi6
Definition
dsRNA virus
semiconservative
Term
bacteriophage phi29
Definition
+-DNA
Term
bacteriophage lambda
Definition
uses host DNA synthesis machinery
Term
bunyaviruses
Definition
hanta virus
+-ambisense, resemble -strand translate - strand to +mRNA to make transcriptase/replicase
Term
coronavirus
Definition
mouse hepatitus and SARS
+ strand RNA virus: antigenome to make more + strands
Term
filamentous phage
Definition
M13 and fd
use host DNA machinery, ss circular DNA
-DNA
Term
flavivirus
Definition
hep C-binds PKR to inhibit, west nile
+RNA
Term
filovirus
Definition
Ebola
-strand RNA
Term
hep b
Definition
protein inhibits signal transduction pathway
Term
herpesvirus
Definition
herpes simplex-enveloped cubic and direct fusion
is an analog that blocks activation of RNase L and removes phosphate to not prevent the initiation of translation
epstein barr-proteins inhibit signal transduction for interferon and blocks activation of PKR
HSV-binds dsRNA to antagonize interferon
code for own DNA pol
Term
orthomyxovirus
Definition
influenza A
receptor mediated by enveloped, segmented
genome
-RNA virus by cap snatching and splicing mRNA
protein blocks binding of RIG-1
inhibits PKR
Term
papilloma Virus
Definition
code for own DNA pol
ds circular DNA
Term
papovavirus
Definition
SV40, polyoma
uses host DNA, ds circular DNA
Term
paramyxovirus
Definition
measles, sendai
direct fusion
-RNA virus
- strand RNA
Term
parvovirus
Definition
adeno-associated AAV
hairpin ends(self priming palindromes), sequence specific endonuclease cleavage, displacement synthesis
protein primers for end problem
eukaryotic DNA virus-monocistronic
Term
poxvirus
Definition
vaccinia
code for own DNA pol
binds dsRNA to antagonize interferon
continuous ends for solution to end problem
Term
reovirus
Definition
segmented genome
dsRNA virus
protein binds dsRNA to antagonize interferon
Term
retrovirus
Definition
HIV
direct fusion by enveloped, some receptor mediated
inhibits PKR
code for own replicase/transcriptase
-RNA to -DNA via reverse transcriptase
Term
rhabdovirus
Definition
vesicular stomatitis VSV, rabies
VSV enveloped virus helical
-RNA
receptor mediated by enveloped
- strand RNA
VSV: DI particles from deletions panhandles or hairpins
Term
A bacteriophage
Definition
MS2
Term
Tobacco mosaic virus
Definition
TMV
naked capsid helical
Term
togavirus
Definition
sindbis, semiliki, forest virus, SFV
+ strand virus, make - strand by translating polyprotein
Term
picarnovirus
Definition
rhinovirus
polio-naked capsid cubic
protease cleaves PKR
narrow host range isn't infectious to mice in capsid but is without it Mab against polio
+RNA
and can inhibit PKR
Term
Interferon sources
Definition
annealing of + and - strands
reovirus dsRNA
overlapping genes in dsDNA
uncapped 5' ends
Term
Interferon sensors
Definition
endosome: TLR3 binds dsRNA
cytoplasm: RNA helicase RIG-1 binds dsRNA and ssRNA 5'PPP while MDA-% recognizes long dsRNA
Term
antiviral state
Definition
Mx protein induced
2'5'oligo A synthetase induced
RNA-activated PKR induced
Term
2'5' oligo A
Definition
activates RNase L degrades RNA, protein synthesis inhibited --> cell dies
Term
PKR
Definition
prevents initiation of translation-->cell death
Term
DI Particles
Definition
retain 5' and 3' BP
smaller take less time to replicate
interfere for proteins
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