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Virology
RNA viruses
111
Microbiology
Undergraduate 2
05/11/2011

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Term
RNA viruses
Definition
Poliovirus.
Coxsackie virus.
Enterovirus.
Rhinovirus.
Hepatitis A virus.
Norovirus.
Rubella virus.
Eastern equine encephalitis (EEE)
Venezuelan equine encephalitis (VEE)
Western equine encephalitis (WEE)
Flavivirus.
Dengue virus.
St. Louis encephalitis virus (SLE)
West Nile Fever virus.
Yellow Fever virus.
Hepatitis C virus.
Lassa virus.
Lymphocytic choriomeningitis (LCM) virus
Coronavirus.
SARS Coronavirus.
Ebola virus.
Influenza A.
Parainfluenza virus.
Mumps.
Measles.
RSV.
Rotavirus.
Colorado Tick Fever virus.
HTLV 1.
HIV.
Term
Symptoms of Poliovirus
Definition
Mild disease:
Fever, malaise, headache, nausea, vomiting, constipation, sore throat.

Aseptic meningitis:
Above symptoms, plus stiff neck and back pain.

Paralytic polio (Infantile paralysis):
Flaccid paralysis.
Term
Pathogenesis of Polio
Definition
Orally introduced.
Multiplication may initiate in lymphoidal tissue (tonsils, Peyer's patches).
Viremia ensues even in presence of circulating Ab.
Virus continues to be shed for weeks.
Neuronal cells infected via blood stream.
Both spinal cord and brain may be affected.
Myocarditis may be seen on occasion.
Term
Diagnosis of Polio
Definition
Virus isolation in human or monkey cell lines.
CPE develops within 3-5 days.
Identification through neutralization assays.
Serology may be used to show 4-fold rise in Ab to poliovirus.
Term
Specimens used for diagnosis of Polio
Definition
Throat swabs and/or fecal specimens.
Term
Treatment for Polio
Definition
Supportive
Term
Incubation period for Polio
Definition
1-2 weeks.
Term
Epidemiology of Polio
Definition
Vaccines developed in the 1950's (Salk and Sabin)
Eliminated from Western Hemisphere in 1994.
Currently a target for eradication.
Occurs in all age groups.
Children affected more seriously.
Humans are only known reservoir.
Often seen in summer.
Term
Symptoms of Coxsackie virus
Definition
Aseptic meningitis (A,B)
- Fever, malaise, headache, nausea, paresis.

Herpangina (A)
- Febrile pharyngitis with vesicular lesions.

Hand, foot and mouth disease (A)
- Pharyngeal ulcerations coupled with vesicular rash on soles and palms.

Pleurodynia (B)
- Fever and "stabbing" chest pain.

Myocarditis (B)
- Acute inflammation of the heart.
- Presents in adults and children but more severe in children.

Cold-like disease (A, B)
- Rhinitis, congestion.
Term
Pathogenesis of Coxsackie virus
Definition
Orally introduced.
Multiplication initiates in throat and gut.
Spread via circulatory system.
Virus continues to be shed for weeks.
Term
Diagnosis of Coxsackie virus
Definition
Virus isolation in cell culture or newborn mice.
CPE develops within 6-12 days (slower than Polio)
Term
Specimens used for diagnosis of Coxsackie virus
Definition
Throat swabs.
Nasal secretions.
Fecal specimens.
CSF.
(Depends on the disease)
Term
Epidemiology of Coxsackie virus
Definition
Worldwide. No vaccines. More common in summer and fall.
Term
Incubation period of Coxsackie virus
Definition
3-9 days.
Term
How many types of Enterovirus are know to cause human disease?
Definition
Three.
Term
Symptoms of Enterovirus
Definition
Bronchiolitis or pneumonia in children.
Acute hemorrhagic conjunctivitis.
Aseptic meningitis or encephalitis.
Term
Pathogeneis of Enterovirus
Definition
Similar to Coxsackie virus.
Term
Diagnosis of Enterovirus
Definition
Virus isolation in cell culture.
Term
Epidemiology of Enterovirus
Definition
Worldwide. No vaccines. Humans as reservoir. Waterborne transmission most likely cause.
Term
Incubation period for hemorrhagic conjunctivitis (Enterovirus)
Definition
1 day.
Term
Symptoms of Rhinovirus
Definition
Common cold:
-Sneezing, lacrimation, pharyngitis, malaise, chills, bronchitis.
-Clinically may be indistinguishable from similar conditions caused by coronaviruses, adenoviruses, Coxsackie viruses, parainfluenza, and influenza.
Term
Pathogenesis of Rhinovirus
Definition
Enters via respiratory tract.
Replicates in cells of nasal mucosa.
Symptoms are related to host response.
Term
Diagnosis of Rhinovirus
Definition
Based on clinical symptoms.
Term
Treatment of Rhinovirus
Definition
Symptomatic.
Term
Epidemiology of Rhinovirus
Definition
Worldwide. Adults average 1-2 colds per year. Over 100 serotypes. Transmission is likely to be via contact as through respiratory droplets. Being "chilled" is not a predisposing factor.
Term
Incubation period of Rhinovirus
Definition
2-4 days.
Term
Viruses considered Picornaviridae
Definition
Enteroviruses:
- Poliovirus
- Coxsackie virus
- Enterovirus

- Rhinovirus

- Hepatovirus (Hepatitis A Virus)
Term
Virus considered Calciviridae
Definition
Norovirus
Term
Symptoms of Hepatitis A virus
Definition
(Infectious Hepatitis)
Rapid onset; jaundice occurs in prodromal stage - jaundice not always present.

Fever, malaise, anorexia, nausea, abdominal discomfort.

Hepatitis may be caused by: Hep. A, B, C; EBV; Yellow Fever; CMV; HSV; Rubella; some enteroviruses.
Term
Pathogenesis of Hep. A
Definition
Orally introduced.
Multiplication in cells lining alimentary tract.
Transcytosis brings virus to blood stream.
Spreads to hepatocytes.
Symptoms related to cell mediated immune response.
Virus passed in bile and feces.
Term
Diagnosis of Hep. A
Definition
Serology:
-Detection of anti HAV IgM.
-Not recommended to screen asymptomatic cases (False positives)
-Anti HAV IgG useful only as pre vaccine screen.
Term
Treatment of Hep. A
Definition
Supportive.
Term
Incubation period of Hep. A
Definition
About 1 month.
Term
Epidemiology of Hep. A
Definition
Widespread.
Outbreaks associated with families, institutions, camps, daycares and military settings.
Fecal-oral spread (Food workers pose threat)
Raw oysters or clams are a potential source
Anicteric cases more common in children
About 1/3 of US adults have HAV Ab.
Term
Prevention of Hep. A
Definition
Human immunoglobulin.
Vaccination.
Term
Symptoms of Norovirus
Definition
Gastroenteritis:
- Rapid onset; diarrhea, nausea, vomiting, fever, abdominal cramps, headache, malaise.
Term
Properties of Norovirus
Definition
Icosahedral. RNA, single stranded. Non-enveloped. Replicates in cytoplasm.
Term
Pathogenesis of Norovirus
Definition
Orally introduced. Low ID (~10 viral particles). Multiplication in cells of small intestine. Little else understood about pathogenesis of Norovirus infections.
Term
Diagnosis of Norovirus
Definition
Electron microscopy:
- Used in stool specimens.
- Requires relatively high numbers of virus.

Direct detection:
- EIA for Norovirus Ag
- PCR
Term
Incubation period for Norovirus
Definition
24-48 hours.
Term
Epidemiology of Norovirus
Definition
Widespread. Most common cause of adult viral gastroenteritis. More associated with outbreaks than sporadic cases. Estimated 23 million cases per year in US. Outbreaks associated with restraunts, long term care facilities, schools, cruises.
Term
Arenaviridae viruses
Definition
Lassa virus.
Lymphocytic choriomeningitis (LCM) virus.
Term
Coronaviridae viruses
Definition
Coronavirus.
SARS Coronavirus.
Term
Filoviridae virus
Definition
Ebola virus.
Term
Symptoms of Lassa virus
Definition
Malaise, fever, headache, sore throat, nausea, vomiting, diarrhea, myaglia.

80% of cases are asymptomatic. Disease is more severe during pregnancy. Fetal loss is 80%.

In severe cases: Shock, pleural effusion, hemorrhage, seizures.

Deafness is a complication.
Term
How is Lassa virus acquired?
Definition
Via aerosol of rodent excreta.
Transmissible human to human.
Term
Treatment of Lassa virus
Definition
Ribavirin.
Term
Incubation period of Lassa virus
Definition
About 1-3 weeks.
Term
Symptoms of Lymphocytic choriomeningitis (LCM) virus
Definition
Many subclinical cases.
Acute disease manifested as meningitis.
May appear as mild "flu-like" illness with fever, chills, malaise, weakness, headache, sore throat.
Rarely will develop into encephalitis.
Term
Pathogenesis of Lymphocytic choriomeningitis (LCM) virus
Definition
Transmitted via urine, saliva or excreta of infected mice.
Spread throughout body similar to adenoviruses.
Often will spread to meninges.
Cell mediated response of host may actually exacerbate disease.
Term
Diagnosis of Lymphocytic choriomeningitis (LCM) virus
Definition
Serology.
Virus isolation or detection.
Term
Incubation period of Lymphocytic choriomeningitis (LCM) virus
Definition
1-2 weeks.
Term
Epidemiology of Lymphocytic choriomeningitis (LCM) virus
Definition
Widely seen in Europe and the Americas.
Reservoir is house mice.
No evidence of human to human spread.
Term
General characteristics of Lymphocytic choriomeningitis (LCM) virus
Definition
Pleomorphic (spherical) viral particles.
RNA genome.
Enveloped.
Replication occurs in cytoplasm.
Term
Symptoms of Coronavirus
Definition
Afebrile "common colds"; considered relatively harmless viruses for humans.
Unique strain causes Severe Acute Respiratory Syndrome (SARS-CoV)
-Fever, malaise, chills, headache, dizziness, cough, followed by shortness of breath.
-May require ventilation.
Fatality rate is ~10%.
Term
Pathogenesis of Coronavirus
Definition
Highly species specific.
Tropism for epithelial cells of respiratory tract.
SARS agent may represent jumping the "species barrier".
Term
Diagnosis of Coronavirus
Definition
Serology - Ab or Ag detection with EIA or HI

Isolation - Challenging, rarely used.
Term
Incubation period for Coronavirus
Definition
About 5 days.
Term
Epidemiology of Coronavirus
Definition
Worldwide. Cause of perhaps 20% of all colds. Ab found in >90% of adults. Concept of "Super spreaders".
Term
General characteristics of Coronavirus
Definition
Pleomorphic (long filamentous) viral particles.
RNA genome.
Enveloped.
Replication occurs in cytoplasm.
Term
Symptoms of Ebola
Definition
Severe, acute illness with fever, malaise, myalgia, headache, followed by vomiting, diarrhea, rash.

In most serious form, progresses to hemorrhagic disease with hepatic and renal involvement leading to organ failure and death.
Term
Pathogenesis of Ebola
Definition
Highly virulent.
Propism for endothelial cells, macrophages and hepatocytes.
High virus titers in all major organs.
Mortality rate up to 90%.
Term
Diagnosis of Ebola
Definition
Serology.
Isolation: BSL-4 required.
Term
Epidemiology of Ebola
Definition
Central and West Africa.
First recognized in 1976 (Hot Zone - Preston)
Reservoir likely non-human primates, possibly bats.
Term
Incubation period of Ebola
Definition
1-2 weeks.
Term
Orthomyxoviridae virus
Definition
Influenza A
Term
Paramyxovirdae viruses
Definition
Parainfluenza virus.
Mumps.
Measles.
RSV.
Term
Symptoms of Influenza A (also B and C)
Definition
Chills, headache, cough, fever, myalgia, malaise, anorexia.
Complications of influenza are associated with age, debilitating disease, pregnancy.
Secondary pneumonia may develop: Frequently related to bacterial disease.
Term
Pathogenesis of Influenza A
Definition
Spread through airborne droplets.
Tropism for resp. epithelial cells.
Virus spreads to adjacent cells.
Cell death and desquamation ensue.
Edema and monomuclear infiltration leads to many of influenza's symptoms.
Systemic effects related to cytokine action.
Term
Diagnosis of Influenza A
Definition
Virus isolation or detection.
- Embryonated eggs, cell culture.
- Requires hemadsorption or hemagglutination to detect.
FA techniques may be used with shell vial culture.
Direct detection lacks sensitivity and specificity.

Serology: HI, EIA, Neutralization assays.
Term
Treatment for Influenza A
Definition
Amantadine

Prevention - Vaccines.
Term
Incubation period of Influenza A
Definition
2-5 days.
Term
Epidemiology of Influenza A
Definition
Annual outbreaks with predictable pattern.
Up to 5 million cases annually with ~500,000 deaths.
Antigenic drift and shift.
Species variation, genetic recombination.
Pandemic risk.
Term
Paramyxo vs. Orthomyxo: Which is larger?
Definition
Paramyxo.
Term
Replication in the nucleus? (Orthomyxo or Paramyxo)

Other is in the cytoplasm.
Definition
Orthomyxo.
Term
Symptoms of Parainfluenza
Definition
Varies by age and type.
Infants and children: Croup like illness, bronchitis, bronchiolitis, pneumonia. Fever, rhinitis, pharyngitis, otitis media.

Adults: Laryngitis, rhinitis.
Term
Incubation period of Parainfluenza
Definition
About one week.
Term
Epidemiology of Parainfluenza
Definition
Widespread, common cause of serious respiratory illness in infants and children (2nd to RSV), frequently spread on close settings (daycare, etc.)
Term
Symptoms of Mumps
Definition
Infants and children: Acute, febrile disease with enlargement of salivary glands (parotitis)

Adults: Fever, malaise, anorexia.

Complications - Meningitis, orchitis.
Term
Pathogenesis of Mumps
Definition
Spread via resp. route.
Localized in nasal passages and upper resp. tract.
Viremia followed by involvement of parotid glands.
Virus shed in saliva.
Virus may spread to certain visceral organs, particularly kidneys.
Term
Diagnosis of Mumps
Definition
Virus isolation:
-Cell culture with FA detection.
-CPE shows syncytia.
-Detection using Hemadsorption inhibition.

Serology:
-HI or EIA
Term
Incubation period of Mumps
Definition
About 2 weeks.
Term
Epidemiology of Mumps
Definition
Worldwide. Mortality rate is low (~3/10,000 - Often related with mumps encephalitis). Live, attenuated vaccine available.
Term
Symptoms of Measles
Definition
Acute, highly communicable disease with fever, conjunctivitis, coryza, cough, Koplik spots, rash.
Rash begins on face.
More severe in infants and adults than children.
Infectious during prodromal phase.
Term
Pathogenesis of Measles
Definition
Spread via resp. route.
Localized in upper resp. tract.
Spreads to regional lymph nodes.
Viremic spread through RES cells.
Virus secreted in tears, nasal secretions, urine, blood.
Encephalitis is a potenial complication.
Sub-acute sclerosing panencephalitis is a fatal sequela seen rarely.
Term
Diagnosis of Measles
Definition
Often made clincally.

-Antigen detection.
-Virus isolation.
-Serology.
Term
Incubation period of Measles
Definition
About ten days.
Term
Epidemiology of Measles
Definition
Worldwide. Very low infectious dose.
Mortality rate may be up to 5%.
Measles deaths are still a major issue in developing countries.

Live, attenuated vaccine available.
Term
Symptoms of Respiratory Syncytial Virus (RSV)
Definition
Primarily affects children.
Ranges from subclinical to cold to pneumonia.
Otitis media is common complication.
Hospitalization of infant may be required (2:100)
Death of admitted infants occurs 1:100
Term
Pathogenesis of RSV
Definition
Spread via resp. route.
Localized in nasopharynx.
Spreads to lower resp. tract.
Viremia is rare.
Risk to infants is related to small air passages.
Term
Diagnosis of RSV
Definition
Antigen detection.
Virus isolation.
Serology.
Term
Incubation period of RSV
Definition
About 3-5 days.
Term
Epidemiology of RSV
Definition
Worldwide. No vaccine. Reinfection may occur, but with less serious symptoms.
Term
Reoviridae viruses
Definition
Rotavirus.
Colorado Tick Fever virus.
Term
Retroviridae viruses
Definition
HTLV 1
HIV
Term
Symptoms of Rotavirus
Definition
Diarrhea, fever, abdominal pain, vomiting, dehydration.
Loss of electrolytes can be fatal in infants and young children.
Symptoms in adults are mild or not evident.
Term
Pathogenesis of Rotavirus
Definition
Virus attaches to cells in villi of small intestine.
Multiply in these cells and disrupt transport mechanisms.
Sodium and glucose absorption are disrupted.
Infected cells and viruses are sloughed off in the intestine and shed in stool.
Shedding may occur for up to two weeks.
Term
Diagnosis of Rotavirus
Definition
Virus isolation: Cell culture not used.
Virus detection: EM, EIA, LA.
Serology: Uncommon.
Term
Treatment of Rotavirus
Definition
Supportive.
Restore electrolytes.
Term
Incubation period of Rotavirus
Definition
1-3 days.
Term
Epidemiology of Rotavirus
Definition
Worldwide. Single most important cause of gastroenteritis in children worldwide. Fecal-oral spread. Reservoir likely humans. ~5 billion cases per year; ~5 million deaths per year. Outbreaks more common in winter.
Term
Symptoms of Colorado Tick Fever
Definition
Fever, myalgia, headache, nausea, vomiting.
Fever is normally dyphasic.
Term
Pathogenesis of Colorado Tick Fever
Definition
Spread via Tick bite.
Viremia occurs.
Blood cells are infected.
Disease in self limited.
Term
Incubation period of Colorado Tick Fever
Definition
3-4 days.
Term
Human T-lymphotropic virus (HTLV)
Definition
Cause of Adult T-cell Leukemia.
Most commonly seen in Japan.
Likely acquired via breast milk.
Latency up to 50 years.
Term
Symptoms of Human Immunodeficiency Virus (HIV)
Definition
Fatigue, rash, headache, nausea, night sweats (may occur 3-6 weeks after infection)

Immunosuppression: Opportunistic infections - PCP, Candidiasis, Kaposi's sarcoma.
Term
Pathogenesis of HIV
Definition
Very slow progressing.
Blood borne acquisition.
Viremia with seeding of lymphoid organs.
T helper lymphocytes (CD4) are the target cell.
Ultimately, CD4 count drops.
Viral load increases.
Individuals succumb to opportunistic infections and other effects of immunosuppression.
Term
Diagnosis of HIV
Definition
Serology:
-Antibody detection: Screening test (EIA) followed by confirmatory test (WB)
-Western Blot.
-Problem with "window"
-Testing used is influenced by prevalence of disease.
-PCR now being used more routinely.

Cell counts:
-CD4 counts.
-<200 cells per microliter (AIDS)

Viral load:
Used to monitor treatment and disease progression.
Term
Treatment of HIV
Definition
Antiretroviral drugs.
-Nucleoside analog reverse transcriptase inhibitor (NRTI)
-Non-nucleoside reverse transcriptase inhibitor (NNRTI)
-Protease inhibitor (PI)
-Fusion inhibitor
-Chemokine co-receptor antagonists
-Nucleoside inhibitors

Highly active antiretroviral therapy (HAART)

Suppress viral replication.

Does not cure HIV infection/AIDS
Term
Incubation period of HIV
Definition
About 2-3 months to display antibody.
1-15 years to progress to HIV stage 3.
Term
Epidemiology of HIV
Definition
Worldwide; disproportionate distrobution.
Recognized in 1981; Virus isolation in 1983; Test release in 1985.
Routes of transmission vary by population.
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