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Topic 11
Gene Expression
28
Biology
Undergraduate 1
11/14/2013

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Term
Transcribed
Definition

First a gene is transcribed to produce an mRNA then mRNA is then translated on a ribosome on order to produce a protein

Term
Gene expression in bacteria
Definition

DNA -- transcription -- RNA -- translation --protein

Term
RNA polymerase
Definition

Enzyme responsible for making the mRNA molecule during transcription 

Term
Promoter
Definition

Region on the DNA where the RNA polymerase binds

->region to which it is always "upstream" of the genes which is to be transcribed. RNA polymerase moves from the promoter down the DNA, copying the sequence of DNA nucleotides of the genes into RNA nucleotides of mRNA

Term

Lac Operon


Definition

Genes on the bacterial chromosome are often arranged in groups in which all genes of that group are transcribed onto the same mRNA molecule

Term
Group of genes are called
Definition
Operon or transcripotion unit
Term
What bacteria did we use in this experiment?
Definition
E. Coli (bacterium)
Term
Lac Operon contains two parts:
Definition

Structural genes and the regulatory regions

Term
Structural genes
Definition

lacZ, lacY, lacA

 

produce the enzymes involved in lactose and metabolism

Term
lacZ
Definition

Encodes an enzyme called beta-galactosidase which is responsible for cleaving the disaccharide lactose into its component monosaccharide--glucose and galactose

Term
lacY
Definition

Encodes a transport protein called lactose permease, which is responsible for bringing lactose into the cell

Term
lacA
Definition

Encodes an enzyme called transacetylase whose function in lactose metabolism is unclear

Term
Regulatory Regions
Definition

lacI, CAP, P, O

involved in regulation of transcription of the structural genes

Term
P
Definition

Region is the lac promoter where RNA polymerase binds to the DNA

Term
O
Definition

Region called operator. The operator region overlaps the lac promoter. A protein called lac repressor binds to the operator and inhibits transcription of the operon by blocking RNA polymerase

Term
lacI
Definition

Gene is responsible for producing the lac repressor. It is adjacent to, but not actually a part of the lac operon

Term
CAP
Definition

Binding site for a protein called the catabolite activator protein. CAP protein is a positive regulator of transcription, so that when it is bound to the CAP site, transcription of the operon is increased

Term
Effects of lactose and glucose on binding of the lac repressor or CAP proteins to the lac operon
Definition

Lactose Effects.                     Glucose Effects

lactose     lac repressor     Glucose   CAP protein

present       Not bound      Present   Not bound

absent          Bound          Absent    Bound

Term
The beta-galactosidase reaction
Definition

Lactose --B-galactosidase-> glucose + galactose

Term

Non-natural substrate, ONPG

 

color: yellow product produced

Definition

Used instead of lactose to detect the activity of B-galactosidase 

ONPG--B-galactosidase-> o-nitrophenol + galactose

Term
What determines whether or not the lac repressor will be bound to the lac operator?
Definition
Lactose (if present, repressor not bound)
Term
What determines whether or not the CAP protein will be bound to the CAP site?
Definition
Glucose (present, not CAP bound, not present CAP bound)
Term
Carbon Source
Definition

Lactose

glucose + lactose

glycerol

glucose

Term
Which has a greater influence on gene expression, CAP or the lac repressor when both proteins are present on the lac operon?
Definition
lac repressor
Term
what was the purpose of applying CHCl3 (Chloroform) to the E. coli cultures in your test tubes?
Definition
the main purpose of buffer Z is to maintain the proper pH for the optimal functioning of beta-galactosidase
Term
RNA Polymerase binds to what part of the lac operon?
Definition
promoter
Term
the lac Z gene codes for what enzyme?
Definition
RNA polymerase
Term
which of the following is a regulatory gene for the lac operon?
Definition
lac repressor
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