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Regulating Gene Expression in Bacteria
Tryptophan Metabolism and Lactose Metabolism
34
Biology
Undergraduate 1
12/14/2010

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Term
Tryptophan
Definition
Amino acid used for protein synthesis
Term
Bacteria live in fluctuating environments
Definition
Bacteria can produce tryptophan by running a metabolic pathway via enzymes
Term
Tryptophan present
Definition
bacteria cease running metabolic pathway and making tryptophan
Term
tryptophan absent
Definition
run metabolic pathway and produce tryptophan
Term
Regulation acheived by
Definition

regulating enzyme activity via feedback inhibition

or

Regulating enzyme production by regulating gene expression (Tryptophan Operon)

Term
Coding genes
Definition
code for a polypeptide subunit of enzymes needed to make tryptophan
Term
Promoter
Definition

DNA base sequence preceding the coding genes

binding cite for RNA polymerase

Term
Operator
Definition

DNA base sequence located within promoter

attachment site for repressor protein

controls access of RNA polymerase to coding genes

Term

Regulatory Gene

(trpR)

Definition

located elsewhere in genome

codes for repressor protein

usually constitutive (always "on")

Term
Repressor
Definition

allosteric protein that exhibits specificity for an operator

binds reversibly to operator

Blocks RNA polymerase binding to the promoter (blocks transcription)

trp repressor produced in an inactive form

i.e. has low affinity for operator

Term
corepressor
Definition

substance that converts repressor protein from inactive to active form

trp operon: corepressor is tryptophan

Term
If tryptophan is absent from environment
Definition

The repressor remains inactive

RNA polymerase can bind to promoter

DNA is transcribed

 

Operon remains on

Bacterial cell produces enzymes for tryptophan production

Term
Tryptophan present in environment
Definition

binds to and activates the repressor

binds to the operator

RNA polymerase cannot bind

DNA can not be transcribed

Operon turned off

Stops producing enzymes

Term
Lactose is a disacharide made of
Definition

glucose

galactose

Term
Lactose present in environment
Definition

bateria need to make enzymes to catabolize the lactose

 

LACTOSE OPERON

Term
lactose absent in environment
Definition

no need to make enzymes

 

Term
lac Z
Definition

beta galactosidase

hydrolyzes lactose into glucose and galactose

Term
lac Y
Definition

permease

protein that transports lactose into cell

Term
lac A
Definition
transacetylase
Term
Promoter
Definition
binding site for RMA polymerase
Term
Operator
Definition
binding site for repressor
Term

Regulatory gene

(lacl)

Definition
produces active repressor
Term
Repressor
Definition
allosteric protein that binds to the operator and prevents transcription
Term
Inducer
Definition

inactivate the repressor

e.g. allolactose=lactose

Term
lactose is ABSENT
Definition

active repressor binds to operator

RNA polymerase can not bind to promoter

DNA cannot be transcribed

Operon is OFF

lactose catabolizing enzymes not produced

Term
lactose PRESENT
Definition

inactivates the repressor

repressor can not bind to operator

RNA polymerase can bind to promoter

DNA Can be transcribed

Production of enzymes for lactose catabolism

Operon is ON

Term
Positive Gene Regulation works by
Definition
enhancing transcription
Term
Positive Gene Regulation utilizes:
Definition

activators

f: switch transctiption on

Term

CAP

Catabolite Activator Protein

Definition

activator for lac operon

inactive form

activated by cAMP

Term
premise
Definition
glucose is the preferred energy source of bacteria
Term
[Glucose] low
Definition
[cAMP] high
Term

glucose absent

lactose present

Definition

[cAMP] high-> CAP is active

CAP binds to promoter->enzymes are produced

Term
glucose and lactose present
Definition

[cAMP] low-> CAP is inactive

CAP cannot bind to promoter

RNA polymerase does not readily bind

very few lactose digesting enzymes are produced

Term
Lactose operon under dual control
Definition

negative control via repressor/ OFF switch

positive control via CAP/VOLUME switch

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