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proteins
chem 101 unit 4
104
Chemistry
Undergraduate 1
11/30/2011

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Term
Nucleoside
Definition
purine or pyrimidine covalently bonded to a sugar
Term
Nucleotide
Definition
nucleoside to which 1-3 phosphate groups are covalently bonded
Term
Nucleic Acids
Definition
Polymer of nucleotides covalently liked by phosphodiester bonds
Term
Deoxyribonucleic Acid
Definition
(DNA) double stranded nucleic acid composed of repeating nucleotides
Term
Ribonucleic Acid
Definition
(RNA) Single stranded nuclein acid found in every living cell.
Term
Gene
Definition
single stranded section of DNA that codes for proteins
Term
Chromosome
Definition
liner, double stranded, carry all of an organisms genetic information.
Term
Metabolism
Definition
the sum of all biochemical reactions that occur within a cell.
Term
Chemical Components of Nucleotides
Definition
* Pentose Sugar
* 1-3 Phosphate Groups
* Nitrogenoous base
Term
Components of DNA
Definition
Nitrogenous Bases: Adenine, Guanine Thymine & Cytosine
Pentose Sugar - Deoxyribose
Phosphate Groups
Term
Mutation
Definition
a change in the DNA base sequence in a gene. can result from substitutions, insertions or deletions.
Term
How can mutations affect a protein?
Definition
1) No effect
2) Diminished or complete loss of protein function.
3) Creation of a new function
Term
Components of RNA
Definition
Nitrogenous bases: Adenine, Guanine, Uracil, Cytosine
Pentose sugar - Ribose
Phosphate Groups
Term
Structure of RNA
Definition
single stranded
complementary paired bases:
Adenine - Uracil
Guanine - Cytosine
Term
Messenger RNA (mRNA)
Definition
carries genetic information for a protein from DNA to the ribosomes
Term
Ribsomal RNA (rRNA)
Definition
the "platforms" where protein synthesis occurs.
Term
Transfer RNA (tRNA)
Definition
delivers the correct amino acid to the ribosome to be incorporated into a new protein
Term
Transcription
Definition
DNA->RNA The process in which a gene is a template for the creating of RNA.
Occurs in the cell nucleus
Term
Translation
Definition
mRNA->Protein
the process where mRNA is used to create a protein.
Occurs in cytolplasm on ribosomes.
Term
Codon
Definition
The three base sequences that encode a single amino acid
Term
Replication
Definition
process by which DNA is copied, basis for biological inheritance.
Occurs in the nucleus.
Term
Protein
Definition
polymer of amino acids covalently joined by peptide bonds.
Term
Peptide Bond
Definition
Covalent bond between the carboxyl group of one amino acid and the amino group on another.
Term
Zwitterion
Definition
ion that has both a positive and a negative charge. formed as the amino group is protonated and the carboxyl group is dissociated.
Term
Denaturation
Definition
the organized structure of a protein is disrupted. Results in loss of function.
Term
Acute Phase Reactants (APR)
Definition
proteins whose concentrations change after trauma, burns, etc.
Term
Cryoglobulin
Definition
precipitate or gel whens erum is cooled, but re dissove when it is warmed.
Term
Immunoglobulins
Definition
antibodies
Term
Elements contained in all proteins
Definition
Carbon, Hydrogen, Oxygen, Nitrogen
Term
R-Group
Definition
hydrophobic or hydrophillic, a variable group of atoms attatched to every amino acid.
Term
Primary Structure of Proteins
Definition
linear sequence of amino acids, held together by polypeptide bonds.
Term
Secondary Structure
Definition
folding of the primary structure. cause principally by hydrogen bonds.
Term
Tertiary Structure
Definition
additonal folding of the secondary structure, places hydrophobic AA on the inside and hydrophillic on the outside.
Term
Quaternary Structure
Definition
overall 3-D folding of 2 or more polypeptides.
Term
Globular Protein
Definition
compact, spherical structures, generably soluble in salt, most proteins in body.
I.E. albumin, antibodies, enzymes, hormones, and hemoglobin.
Term
Fibrous Proteins
Definition
relatively long, generably insoluable in salt, represent structural protiens, I.E. Collagen, Elastin, Keratin, Actin, Myosin
Term
Functions of Proteins
Definition
1) Antibodies
2) Catalyze biochemical reactions
3) Transport molecules
4) regulatory roles
5) structure
6) movement
7) nutrients
Term
Hemoglobin
Definition
oxygen carrying protein found in RBCs, contains 4 heme groups and 4 polypeptides.
Term
Functions of Hb
Definition
Gas Transport
Acid Base Balance
Term
Components of Hb
Definition
Heme
Globin
Term
Heme
Definition
Protoporphyrin IX ring, and Ferrous Ion
Term
Site of Heme Synthesis
Definition
Bone Marrow.
Term
Aminoeleluniv acid (ALA) Synthase
Definition
catalyzes the initial step, heme inhibits this enzyme.
Term
Lead Inhibition
Definition
inhibits all steps in porphyrin synthesis by denaturation
Term
Myoglobin
Definition
found in muscle tissue, reserve supply of O2. contains one polypeptide and one protoporphyrin ring.
Term
What are the factors affecting Oxygen Transport?
Definition
Partial PRessure of Oxygen, PH, Temperature, 2,3-DPG
Term
How does decreased P50 affect O transport?
Definition
shift to the left, and an impaired oxygen release to tissues
Term
How does an increased P50 affect O transport?
Definition
shift to the right, eases the delivery of oxygen to tissues.
Term
How does Increasded blood acidity affect O transport?
Definition
decrease PH, shift to the right, lowering of affinity for O2
Term
How does decreased blood acidity afftect O transport?
Definition
increased PH, shift to the left, increase affinity for O2
Term
How does temp increase affect O transport?
Definition
hemoglobin more readily releases O2, shift to the right.
Term
How does temp decrease affect O transport?
Definition
hemoglobin less readily releases O2, shift to the left.
Term
2,3-DPG is significant because?
Definition
essential in enabling the unload of O2 and it is the most important factor that affects O2 transport.
Term
What are the 4 forms of normal Hemoglobin?
Definition

1) Normal Hb A

2) Normal Variant Hb A2

3) Normal Variant Hb A1c

4) Fetal Hb F

Term
Why is Hb A1c Significant?
Definition
the concentrations serve as an indicator for prolonged high glucose concentrations, used to monitor diabetics
Term
Bilirubin
Definition
the breakdown product of the normal heme catabolism.
Term
What happens to Iron during heme catabolism?
Definition
iron is recycled, by being released from the heme and then returned to the plasma, then it is carried to the bone marrow.
Term
What are the factors that denature proteins?
Definition
Heat, organic solvents (Alcohol), Detergents, salting out, pH changes, HEavy metals, mechanical stress
Term
How does heat denature proteins?
Definition
as temp increases, molecular motion inceases, bonds are disrupted.
Term
Simple Proteins
Definition
yield only amino acids when hydrolyzed. I.E. albumin, insulin, fibrinogen.
Term
Conjugated Proteins
Definition
yield amino acids, and a non protein substance upon hydrolysis
Term
Glycoproteins
Definition
covalently linked carbohydrate
Term
Phosphoproteins
Definition
covalently linked phosphate groups
Term
Lipoproteins
Definition
covalently linked lipids, like cholesterol, triglyceride, and phospholipids.
Term
Metalloproteins
Definition
contain ions and are often colored. I.E. chlorophyll and hemoglobin
Term
Essential Amino Acids
Definition
isoleucin, leucin, lysine, methionine, phenylalanine, threonine, tryptophan, and valine
Term
Liver uses amino acids, for:
Definition
Growth, maitenence, repair, enzyme production, albumin, lipoproteins.
Term
Where are immunoglobulins produced?
Definition
B lymphocytes that originate in bone marrow
Term
Where are plasma proteins synthesized?
Definition
in the liver, circulate the blood stream.
Term
Prealbumin
Definition
Tryptophan rich tetrameric glycoprotein, mainly synthesized in the liver.
Term
Prealbumin Function
Definition
Carrier for thyroid hormones, and Vitamin A.  Used to assess the patients nutritional state.
Term
Clinical Significance of Prealbumin
Definition
decreases in liver disease, increases with steroid use, pregnancy and chronic renal disease.
Term
Antibody
Definition
immunoglobulins. produced in response to an antigen.
Term
Antigen
Definition
substance that stimulates antibody formation
Term
Phenylketonuria (PKU)
Definition
genetic deficiency of the enzyme phenylalanine hydroxylase
Term
Maple Syrup Urine Disease (MSUD)
Definition
genetic deficiency in the enzyme that degrades the branched chain amino acids; branched chain alpha ketoacid dehydrogenase
Term
Causes of Hypoproteinemia
Definition
  • starvation
  • excess loss in urine
  • chronic liver disease
  • inflammatory conditions
Term
Causes of Hyperproteinemia
Definition
  • dehydration
  • increased synthesis of gamma globulins
  • measurement of unexpected protein (caused primarily by lab error)
Term
Porphyrin Conditions
Definition

Porphyrinuria - excessive excretion in urine

Porphyrinemia - presence of porphyrin in the plasma or serum

Term
Porphyrin Disorders
Definition

Hereditary - genetic disorders from impaired activeity of enzymes

Acquired - more common; lead poisoning, renal failure, iron deficiency, liver disease

Term
Photoporphyrias
Definition
cutaneous porphyria that presents itself with exposure to light.
Term
Thalassemias
Definition
disease state from globin genetic mutations that result in little globin protein being produced.  It affects Hbs O transport.
Term
Sickle Cell Anemia
Definition

Hb S sickled RBC, most common type of abnormal Hemoglobin, results from single mutation of the B globin.

can be life threatening.

Term
Carbaminohemoglobin (CO2Hb)
Definition
compound of CO2 and Hb.
about 10-20% of co2 binds to globin, forming this.
Term
Methemoglobin (M-Hb)
Definition
hemoglobin where the iron molecule is oxidized to Fe+3 which cannot bind oxygen. 
Term

Sulfhemoglobin (S-Hb)

 

Definition

green pigmented compund of hydrogen sulfide and Hb.

irreversible oxidation, sometimes after exposer to TNT, or sulfur.

Term
Carboxyhemoglobin (COHb)
Definition

formed by the binding of CO to heme.

normally .2-.8% smokers up to 10%. Co poisoning exhibits cherry red color.

Term
Cryoglobulin Clinical Significance
Definition
seem in myeloma, macroglobulinemia, autoimmune diseases like, rheumatoid arthritis, & SLE
Term
Functions of Immunoglobulins
Definition
  • neutralize toxic substances
  • aid phagocytosis
  • kill pathogens
  • combine with antigens and destroy cells
Term
5 classes of Immunoglobulins
Definition
IgG, IgM, IgA, IgD, IgE
Term
Multiple Myeloma
Definition
malignant diseases caused by the presence of neoplastic plasma in bone and bone marrow
Term
How are Bence-Jones Proteins analyzed?
Definition

Heating urine to 40-60C, they will precipitate while others remain in solution. at 100C proteins will redissolve.

Cooling reverses this.

Term
C-reactive Protein (CRP)
Definition
APR, most sensitve indicator of inflammation, rises about 8 hours after onset, increases in all bacterial infections, rarely with viral 
Term
Haptoglobin
Definition
APR concentrations increase in hypoalbuminemia states like nephrotic syndrome.
Term
Ceruloplasmin
Definition
APR carries 90% of the copper in plasma
Term
Alpha1-antitrypsin
Definition
may protect the body from proteolysis by proteases released from leukocytes and macrophages.
Term
Alpha2-macroglobulin
Definition
Protease inhibitor
Term
Fribinogen
Definition
Essential blood clotting protein
Term
C3/C4
Definition
Early components of the complement system
Term
Transferrin
Definition
transport protein for iron. decrease seen in inflammatory response
Term
Albumin
Definition
Levels may decrease to divert protein production away from the liver and towards the components increasing for inflammatory response
Term
Prealbumin
Definition
Decrease related to protein malnutrition
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