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Physiology
Ex 1: Slide Set 1 and 2
63
Biology
Undergraduate 3
01/31/2010

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Cards

Term
Where does most of your energy go towards in regards to your whole life history?
Definition
Growth
Term
proteome
Definition
total of all of a bodies proteins. result/derivative of its genome.
Term
laws of thermodynamics
Definition

1: you cannot create matter/energy or destroy it. everything is a conversion

 

2. order towards disorder (entropy) and without putting energy into a system it falls apart

Term
relate the following: equilibrium, energy input, energy output and life of an organism.
Definition
An organism who is at equilibrium cannot sustain life. the energy input of an organism must be greater than the output in order to maintain existance.
Term
What are the 4 main life-history events that take up an organisms energy?
Definition
growth, reproduction, tissue maintenance and energy storage
Term

what is homeostasis and how is it attained?

Definition

relatively constant internal environment that is attained by integrated organ/organelle system functions.

Term
How much energy goes into maintaining NaK pump?
Definition
30 percent
Term

What molecules/ions are involved in the following processes?

1. pH maintenance

2. Salinity maintenance

Definition

1. CO2 and H+

2. H2O, Na+, K+, Cl-

Term
Why don't single-celled organisms get that big?
Definition
Because increasing in size would result in a decrease in surface area to volume ration. This sucks because all the cellular materials are shipped in and out through the surface area (membrane). So having less surface area and more volume creates a higher demand for materials but a lower area from which to get them.
Term
define physiology
Definition
study of internal, dynamic mechanisms through which an organism attains homeostasis
Term
Outline the Organ Systems of homeostasis and their basic roles.
Definition

Organ Systems

1. Digestive:  energy extraction

2. Respiratory System: exchange of O2/CO2 and pH reg

3. Cardiovascular: circulation of O2/CO2/ions/biomolecules

4. Renal: kidneys flush blood through. All body fluid composition and pH regulation

Control Systems

1. Nervous: electrochemical signals

2. Endocrine: hormone signals

 

 

 

Term
Two purposes of organ system function and an example of each
Definition

1. Cope w/ variations in the external environment

-oxygen levels in mountains, salinity in the ocean, temperature

 

2. Function at variable activity levels

being able to change your metabolic rate is more efficient.

-cheetahs don't need to use all their energy when they're just dicking around, but they're going to need when they're hungry.

Term
describe the prefixes "steno" and "eury" and their physiological implications
Definition

steno refers to narrow

eury refers to broad

 

ex. something that is stenohaline means that it can handle only a narrow range of salinities.

 

something that is euryhaline can hangle a broader range of water salinities

Term
conformance vs regluation
Definition

conformance: physiological variable state conforms to environmental values

 

regulation: the physiological state remains approximately constant over a range of enviro variable values

Term
acclimate
Definition
changing physiological capacity over time as a result of a changing external factor like temperature or altitude.
Term
RPV?
Definition

Regulated Physiological Variable

 

variables that remain roughly constant aroung a physiological set-point

Term
What's the physiological setpoint for mean arterial blood pressure?
Definition
100 mmHg
Term

What is systolic blood pressure?

 

diastolic blood pressure?

Definition

systolic: max BP at heart contraction

 

diastolic: min BP right before contraction

Term
acute vs. chronic response
Definition

acute: initial, short term changes in the physiology of organisms soon after they are exposed to a new environment. this is a reversible response.

 

chronic: long term changes in the physiology of an organism after they've been in an evironment for awhile.

Term
Explain the two types of Feedback responses. Which is the most predominate?
Definition

Negative Feedback: difference in the RPV state and set point is decreased.

(RPV-PSP=O)

 

Positive Feedback: the difference between the RPV-PSP=+ or -#

 

 

Negative Feedback

 

Term
define specialist
Definition
species narrowly adapted to an environment and often extreme conditions
Term
define fitness from a physiological perspective
Definition
the number of an individuals offspring who can live to reproduce
Term
fecundity
Definition
number of offspring
Term
why does a fishes body fluid salinity have to match that of it's surrounding?
Definition
if a fishes fluids have a lower concentration of salt than the surroundings, the h2o in its body will try to leave through osmosis. makes it difficult to retain h20
Term
natural selection v. adaption
Definition
natural selection is differential, non-random, reproductive success amoung individuals in a population and adaptation is any trait that arises through natural selection
Term
3 requirements for natural selection
Definition

1. trait variation: there has to be more than one trait in a population

2. fitness variation associated with the trait variation: one trait should be more beneficial than the other(s)

3. heretibility of trait: must be genetic phenotypes with an associated genotype that can be passed down to offspring

Term
list the protein types
Definition
structural, enzymes and hormones
Term
biosynthesis
Definition
taking certian biomolecules and constructing new ones from it
Term
metabolism and its two constituent processes
Definition

sum total of all biochemical reactions

 

1. anabolism

2. catabolism

Term
what type of reactions drive anabolism and catabolism?
Definition

anabolism: condensation reaction

catabolism: hydrolysis reaction

Term
what type of bond holds amino acids together?
Definition
peptide bonds
Term
uses for polypeptides
Definition

1. bodily bulk growth

2. enzyme formation

3. Energy storage

Term
describe the energy changes associated with anabolism and catabolism
Definition

anabolism: ↓E compound to ↑E compound

 

catabolism: ↑E compound to ↓E compound

Term
most required molecule for catabolism
Definition
water
Term
proteolysis
Definition
catabolic process that breaks peptide bonds via hydrolysis and reverts them to amino acids
Term
What are the terms for the forwards and backwards interconversion of glycogen, glucose and pyruvate?
Definition

glycogenesis              gluconeogenesis

glycogen←←←←←glucose←←←←←←pyruvate

glycogen→→→→→glucose→→→→→pyruvate

glycogenolysis               glycolysis

 

 

Term
What molecules makes up the most of the human body?
Definition
proteins
Term
enzyme
Definition
protein catalyst  of biochemical rxns
Term
After chemical energy is extracted properly from a food source, what are it's three majoy roles/uses in the body?
Definition

1. Biosynthesis: chemical energy stored in body tissues

2. Maintenance:the major organ systems for example Breathing.

3. Generating external work (movement)

Term
What are the three ways in which energy is lost from the body?
Definition

1. Chemically (the chemical bonds in waste: CO2 and urea)

2. Heat

3. External work (movement)

Term
basic protein structure
Definition

H2N

      \

                            CH---COOH

    /

R

Term
5 categories of amino acids
Definition

nonpolar

aromatics

+charge

-charge

polar uncharged

Term
What parts of amino acids bond?
Definition
amine group and carboxyl group
Term
what does a kinase do?
Definition
phosphorylate things
Term
what are the four types of weak non-covalent bonds that contribute to a proteins structure?
Definition

1. ionic bonds

2. hydrogen bonds

3. regions of hydrophobia

4. van der Waals interactions

Term
What is the role of lactate dehydrogenase? What does this reaction do?
Definition
It catalyzes the conversion of pyruvic acid to lactic acid. In the process NAD is regenerated for glycolysis.
Term
difference between exergonic and endergonic reactions?
Definition

exergonic reactions ultimately release energy

 

endergonic reactions build energy

 

Gibbs free energy decreases in exergonic reactions

Gibbs free energy increases in exergonic reactions

Term
Why do mammals even need catalysts/enzymes for reactions?
Definition
Energy for any reactions is derived from kinetic energy inside the body. This is ultimately body temperature and the thermodynamics of heated/moving molecules. However, most mammals body temperature is not high enough to give adaquate energy for these reactions to happen without the help of an enzyme.
Term
Two models for enzymatic reactions
Definition

Lock and Key

 

Induced fit

Term
What is Vmax?
Definition
maximum reaction rate when the [substrate] is NOT limiting. All enzymes are saturated. Substrates cannot enter active site at a faster rate.
Term

What is Km?

 

What does a low value for Km imply?

Definition

Michaelis Constant

 

[Substrate] at which 1/2 the active sites are occupied.

 

a lower Km means a higher attraction between the active site and substrate

Term

enzyme specificity

 

enzyme affinity

Definition

an enzyme that works for only one reaction is considered highly specific

 

enzyme affinity is the strength of electrostatic attraction between and enzyme and it's substrate

Term

How do the following enzymes prefer their pH?

 

blood enzyme

intracellular enzyme

pepsin

trypsin

Definition

7.4

7.3

pepsin is a gastric enzyme: 2.0

trypsin is a pancreatic enzyme: 8.0

Term
Explain the relationship between the duodonem, pancreas, stomach and their respective pHs.
Definition

The stomach is highly acidic and has a representively low pH.

 

As the acidic material moves out of the stomach and into the duodonem, it needs have a higher pH so as to not damage the tissue of intestines.

 

The pancreas, which is attached to the outside of the duodonem, is highly basic so it can send buffers into the duodonem in an attempt to higher the pH of the duodonem.

Term
Draw an energy coordinate of an exothermic reaction.
Definition
[image]
Term
Draw a reaction coordinate for an endergonic reaction
Definition
[image]
Term
At what temperature is metabolic failure for the human body?
Definition

43-45C or 112F

 

 

Term
effector
Definition

a protein, 2nd messenger or excess product that either activates or deactivates a enzyme allosterically

 

 

Term
Describe the allosteric effects on phosphofructokinase
Definition

On its way to becoming pyruvic acid glucose becomes the intermediate Fructose-6-phosphate. F6p must be converted to Fructose-1,6-diphosphate as a precursor to becoming pyruvate.

 

The enzyme phosphofructokinase catalyzes the reaction from F6p to          F1-6dp. Citrate allosterically inhibits PFK. AMP allosterically activates PFK.

Term
cofactor
Definition
 non-protein molecule that binds to an enzyme either tightly or loosely to a protein and is required for proper funtioning.
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