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Phylogeny, Ecology, Ecosystems, Chemical Context of Life
N/A
113
Biology
Undergraduate 1
10/06/2010

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Term
Phylogeny
Definition

evolutionary history of a species or group of related species

Term
Taxonomy 
Definition
naming and classifying the diverse forms of life
Term
Systematics
Definition
classifying organisms and determining their evolutionary relationships 
Term
Common Ancestor
Definition
most recent individual from which all organisms in the group are directly descended.
Term
Node
Definition
a point of intersection where branching occurs
Term
Polytomy
Definition
in a phylogenetic tree, a branch point from which more than two descendant taxa emerge. Indicates that the evolutionary relationships among the descendant taxa are not clear
Term
Homology
Definition
similarities in chracteristics resulting from shard ancestry
Term
Clade
Definition
group of species that includes an ancestral spcies and all its descendants
Term
Cladistics
Definition
an approach to systematics in which common descent is the primary criterion used to classify organisms and placing them into clades
Term
Outgroup
Definition
species or group of species from an evolutionary lineage that is known to have diverged before the lineage that contains the groups of species being studied
Term
Shared Ancestral Charcater
Definition
A character, shard by members of a particular clade, that originated in an ancestor that is not a member of that clade
Term
Shared Derive Character
Definition

An evolutionary novelty that is unique to a particular clade

 

Term
Maximum Parsimony
Definition
principle that states that when considering multiple explanations for an observation, one should first investigate the simplest explanation that is consistent with the facts
Term
Maximum Likelihood
Definition
applied to systematics, a principle that states that when considering multiple phylogenetic hypotheses, one should take into account the hypotheses that reflects the most likely sequence of evolutionary events. Gives certain rules of how DNA changes over time
Term
Tree of all life
Definition
a manybranched tree illustrating the idea that all life on earth is related 
Term
Domains
Definition

Taxonomic category above the kingdom level.

The 3 Domains are Archaea, Bacteria, and Eukarya

Term
Kingdoms
Definition
Taxonomic category, second largest after domain
Term
Archaea
Definition
One of two prokaryotic domains (bacteria is the other)
Term
Horizontal Gene Transfer
Definition
transfer of genes from one genome to another through transposable elements, plasmid exchange, viral activity,, and fusions of different organisms
Term
Ecology
Definition
study of how organisms interact with each other and their enviornment
Term
Enviornmentalism
Definition
advocating the protection of nature
Term
Biotic Factor
Definition
Living organisms in the enviornment
Term
Abiotic Factor
Definition
Nonliving; referring to physical and chemical properties of the enviornment
Term
Dispersal
Definition
Movement of individuals away from their parent location. Can expands the geographic range of population or species
Term
Potential Range
Definition
Where a species is capable of living, but currently does not
Term
Actual Range
Definition
where a species actually lives
Term
Interspecific Interactions
Definition
relationship between individuals of two or more species in a community
Term
Competition
Definition

the struggle among organisms, both of the same 

and of different species, for food, space, and other vital 

requirements.

Term
Competitive Exclusion
Definition
Populations of two similar species compete for the same limited resources, one population will use the resources more efficiently and will have a reproductive advantage that will lead to the elimination of the other species
Term
Fundamental Niche
Definition
niche potentially occupied by a species
Term
Realized Niche
Definition
portion of the fundamental nice that a species actually occupies a particular enviornment
Term
Resource Partitioning 
Definition
division of environmental resources by coexisting species such that the niche of each species differ by one of more significant factors from the niches of all coexisting species
Term
Character displacement 
Definition
tendency for characteristic to be more divergent in sympatric populations of two species than in allopatric populations of the same two species
Term
Predation
Definition
interaction between species in which one species, the predator eats the other, the prey
Term
Batesian mimcry
Definition
harmless species looks like a species that is poisonous or harmful to predators
Term
Mullerian mimicry
Definition
mutual mimicry by two unpalatable species
Term
Herbivory
Definition
interaction in which an organism eats parts of a plant or alga
Term
Symbiosis
Definition
ecological relationship between organisms of two different species that live together in direct intimate contact
Term
Parasitism
Definition
symbiotic relationship in which one organism, the parasite, benefits at the expense of another, the host, by living either within or on the host
Term
Mutualism
Definition
symbiotic relationship in which both participants benefit
Term
Commensalism
Definition
symbiotic relationship in which one organism benefits but the other is neither helped nor harmed
Term
Trophic structure
Definition
different feeding relationships in an ecosystem, which determine the route of energy flow and the pattern of chemical cycling
Term
Food Chains
Definition
pathway along which food energy is transferred from trophic level to trophic level, beginning with producers
Term
Food webs
Definition
interconnected feeing relationships in an ecosystem
Term
Energetic Hypothesis
Definition
concept that the length of a god chain is limited by the inefficiency of energy transfer along the chain
Term
Dominant species
Definition
species with substantially higher abundance or biomass than other species in a community, exert powerful control over the occurrence and distribution of other species
Term
Keystone species
Definition
species that is not necessarily abundant in a community yet exerts strong control on community structure by the nature of it ecological role or niche
Term
Foundation species
Definition

species that dramatically alter their physical environment on a large scale

ex. beavers and dam building

Term
Climate
Definition
prevailing weather conditions at a locality
Term
Ecosystem
Definition
All organisms in a given area as well as the abiotic factors with which they interact
Term
Conservation of energy
Definition
energy can not be created or destroyed but only transferred or transformed
Term
Conservation of mass
Definition
matter can change form but cannot be created or destroyed
Term
Primary producers
Definition
autotroph, usually a photosynthetic organism
Term
Secondary consumers
Definition
carnivore that eats herbivores
Term
Tertiary consumers
Definition
carnivore that eats other carnivores
Term
Detrivores
Definition
consumer that derives its energy and nutrients from nonliving organic material such as corpses, fallen plant material, and the wastes of living organisms, a decomposer
Term
Detritus
Definition
dead organic  matter
Term
Energy flow
Definition
flow of energy through a biological food chain
Term
Gross primary production
Definition
total primary production of an ecosystem
Term
Net primary production
Definition
gross primary production of an ecosystem minus the energy used by the producers for respiration
Term
Bottom-up model
Definition
model of community organization in which mineral  nutrient influence community organization by controlling plant or phytoplankton numbers, which in turn control herbivore numbers, which in turn control predator number
Term
Top-down model
Definition
model of community organization in which predation influences community organization by controlling herbivore numbers, which in turn control plant or phytoplankton numbers, which in turn control nutrient levels
Term
Dynamic stability hypothesis
Definition
idea that long food chains are less stable than short chains
Term
Limiting nutrient
Definition
element that must be added for production to increase in a a particular area
Term
Eutrophication
Definition
process by which nutrients ( phosphorous and nitrogen) become highly concentrated in a a body of water leading to increased growth in organisms like algae or cyanobactria
Term
Evapotranspiration
Definition
total evaporation of water from an ecosystem
Term
Production efficency
Definition
percentage of energy stored in food that is not used for respiration or eliminated as waste
Term
Trophic efficency
Definition
percentage of production transferred from one trophic level to the next
Term
Pyramid of net production
Definition
represents the loss of energy with each transfer in a food chain 
Term
Biogeochemical cycles
Definition
any chemical cycle that involves both biotic and abiotic components of an ecosystem
Term
Water cycle
Definition

Evaporation, condensation, precipitation 

(transpiration by plants also puts water into  the atmosphere)

Term
Carbon cycle
Definition
Decomposition, cellular respiration, C02 in atmosphere, photosynthesis
Term
Nitrogen cycle
Definition
fixation, mineralization, nitrification, denitrification
Term
Phosphorus cycle
Definition
Term
Decomposition
Definition
tissues of a dead organism break down into simpler forms of matter
Term
Critical load
Definition
amount of added nutrient ( nitrogen or phosphorus) that can be absorbed by plans without damaging ecosystem integrity
Term
Acid precipitation
Definition
rain, snow, or fog that is more acidic than pH 5.2
Term
Biological magnification
Definition
process in which retained substances become more concentrated at each higher trophic level in a food chain
Term
Species diversity
Definition
number and relative abundance of species in a biological community
Term
Introduced species
Definition
species moved by humans, either intentionally or accidentally, from its native location to a new geographic region
Term
Atom
Definition
smallest unit of matter that retains the properties of an element
Term
Molecule
Definition
two ore more atoms held together by covalent bond
Term
Compound
Definition
substance consisting of two or more different element combined in fixed ratios
Term
Electrons
Definition
subatomic particle with a a single negative electrical charge
Term
Protons
Definition
subatomic particle with a single positive electric charge
Term
Neutrons
Definition
subatomic particle having no electrical charge
Term
Atomic number
Definition
number of protons in the nucleus of an atom
Term
Atomic mass
Definition
total mass of an atom, mass in grams of 1 mol of the atom
Term
Element
Definition
any substance that cannot be broken down to any other substance
Term
Isotopes
Definition
has the same number of protons but a different number of neutrons
Term
Covalent bond
Definition
strong chemical bond in which two atoms share one or more pairs of valence electrons
Term
Single bond
Definition
single covalent bond, sharing of a pair of valence electrons by two atoms
Term
Double bond
Definition
double covalent bond, sharing of two pairs of valence electrons by two atoms
Term
Electronegative
Definition
attraction of a given atom for the electrons of a covalent bond
Term
Ionic bond
Definition
chemical bond resulting from the attraction between oppositely charged ions
Term
Hydrogen bond
Definition
weak chemical bond that is formed when the slightly positive hydrogen atom of a polar covalent bond in one molecule is attracted to the slightly negaative atom of a polar covalent bond in another molecule
Term
Chemical reaction
Definition
making and breaking of chemical bonds, leading to changes in the composition of matter
Term
Reactant
Definition
starting material in a chemical reaction
Term
Product
Definition
material resulting from a chemical reaction
Term
Chemical equilibrium
Definition
the state in which the rate of forward reaction equals the rate of the reverse reaction
Term
ions
Definition
atom that has gained or lost one or more electrons, acquiring a charge
Term
Cation
Definition
positively charged ion
Term
Anion
Definition
negatively charged ion
Term
Valence electron
Definition
electron in the outermost electron shell
Term
Cohesion
Definition
binding together of like molecules
Term
Adhesion
Definition
attraction between two different kinds of molecules
Term
Surface tension
Definition
measure of how difficult it is to stretch or break the surface of a liquid
Term
Specific heat
Definition
amount of heat that must be absorbed or lost for 1g of a substance to change its temperature by 1 degree Celsius 
Term
Heat of vaporization
Definition
quantity of heat a liquid must absorb for 1 g of it to be converted from liquid to the gaseous state
Term
Hydrophobic
Definition
having an aversion to water
Term
Hydrophillic
Definition
having an affinity towards water
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