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Prefix for a heterocycle with Oxygen |
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Prefix for a heterocycle with a Sulfur |
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Prefix for a heterocycle with a Nitrogen |
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When numbering heterocycles, you usually begin with which atom being #1? |
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When more than one heteroatom is present in a heterocycle, how do you know which takes precedent over the other? |
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Left: 1,3,4-Thiadiazole
Right: 1,2,5-Thiadiazole |
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Name these molecules
[image] |
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Left: s-Triazole
Right: 1-H-1,2,4-Triazole |
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Name these molecules
[image] |
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Left: Oxazolidin-2-one
Right: Oxazolidin-2,4-dione |
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Name these molecules
[image]
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Left: 3H-1,4-benzodiazepine
Right: 1H-1,4-benzodiazepine |
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The total amount of energy in the universe is constant. Energy can neither be created nor destroyed, but it can be transformed from one form into another.
DH = DE
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What is the First Law of Thermodynamics? |
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If DG is negative, then we have a spontaneous reaction.
DG = DH - TDS |
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Explain Gibbs Free Energy |
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Enantiomers are stereoisomers that are mirror images of each other.
Diastereoisomers are stereoisomers, however they are not mirror images. |
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What is the difference between enantiomers and diastereoisomers? |
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Device to measure polarity |
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Spatial Orientation of Functional Groups becomes important with the 3D alignment and interaction of macromolecules in vivo |
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What is the Significance of Chirality |
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Huckel Rule of Aromaticity |
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The more resonance patterns a conjugate has, the more acidic the molecule is.
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The more resonance patterns a conjugate has, the ____ acidic the molecule is. |
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When you have a proton (H) on N, you need at least 3 resonance forms.
Amide is not acidic because it only has 2 resonance forms. |
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Coop's "2-Carbonyl" Rule of N acidity |
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The lone pair on the nitrogen has a double bond next to it to form a conjugated system. |
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How do you find the pKa for a molecule? |
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p > 0.5 is lipophilic
p < 0.5 is hydrophilic
p = Sp |
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How do you calculate Log P for a molecule and what does it mean? |
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Add the two heterocycles and count up the number of missing bonds. Take a percentage of benzene off of the total for your estimated Log P value. |
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If you are calculating the Log P for a molecule that is composed of more than one aromatic heterocycle, how do you proceed. |
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- Determine functional groups
- Look on chart to determine solubility
- Add up number of carbons it will dissolve
- Compare to number of carbons in molecule
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Describe the process for determining whether a molecule is soluble in water or not. |
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What does a low pKa mean for an acid? For a base? |
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Weak acid or strong base. |
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What does a high pKa mean for an acid? For a base? |
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An acid is soluble in _____ buffer solutions. |
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A base is soluble in _____ buffer solutions. |
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- Determine functional groups
- Determine if each functional group is acidic, basic or neutral
- Determine the pKa of each functional group (look at the chart)
- Use the 2-unit rule to determine the pH that will form a salt at that particular location.
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What is the process for determining if a molecule is soluble at a certain pH |
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Acids are soluble in buffers 2 units above their pKa
Bases are soluble in buffers 2 units below their pKa |
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Quats are quaternary ammonium ions
ALWAYS soluble in water and at ALL pH buffers |
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What is special about Quats |
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Primarily in the liver.
However, enzymes for xenobiotic-metabolism are found in nervous tissue, kidney, lung, plasma, GI tract |
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Where does metabolism occur? |
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That we have an oxidation reaction occurring. |
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If a question mentions a change in color, what is one thing that you can infer? |
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Loss of Electrons is Oxidation (LEO)
Gain of Electrons is Reduction (GER)
LEO goes GER |
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How are electrons affected in either oxidation or reduction? |
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Count the number of bonds to Oxygen |
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How can you determine the organic oxidation state? |
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σ < 0
More prone to oxidation
Examples are amino and hydroxy functional groups on a conjugated system |
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Describe σ in a pi-excessive state. |
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σ > 0
less prone to oxidation
Examples are a nitro or sulfonamide on a conjugated system |
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Describe σ in a pi-dificient state.
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- Determine functional groups
- Determine if functional groups are acidic, basic or neutral
- Determine form of that functional group at specified pH
- Determine if system is pi-excessive or pi-deficient
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Describe the process to determine if molecules are prone to oxidation at a certain pH |
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What are the three main groups that are susceptible to hydrolysis |
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Ester hydrolysis will always give you a carboxylic acid and alcohol as products.
The bond is broken between the two oxygens in the ester. |
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What are the products of ester hydrolysis? |
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Carboxylic acid and primary amine (NH3 if terminal)
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What are the products of amide hydrolysis? |
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Hydrolysis of an amide is slower, due to the leaving group being not so good. |
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Which is a faster reaction, hydrolysis of an amide or of an ester? |
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The one that has the most steric hinderance will hydrolyze slower. |
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How do you predict the relative speed of a hydrolysis reaction between two esters? |
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What are the ultimate hydrolysis products of a carbamate? |
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Hydrolysis products of a nitrile (CN) |
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Nitrile hydrolysis occurs more readily under acidic conditions |
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Nitrile hydrolysis occurs more readily under what conditions? |
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Esters
Amides
Carbamates
Nitriles |
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When given a molecule and asked to determine hydrolysis products, which functional groups should you look for? |
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To increase water solubility |
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What is the function of Phase I Metabolism |
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Hydrolysis
O-dealkylation
N-dealkylation
Azo Reduction
Nitro Reduction |
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What are the most prominent reactions in Phase I Metabolism? |
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What class of enzymes responsible for Phase I Metabolism |
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Products are generally phenolic and the position of hydroyl group can be influenced by the type of substituents on the ring
Electron-donating substituents enhances para- and ortho-hydroxylation
Electron-withdrawing substituents reduce or prevent meta-hydroxylation
Example: for monosubstituted benze compounds, para-hydroxylation usually predominates with some o-products |
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What would be a product of a monosubstituted benzene compound? |
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Dealkylation of secondary and tertiary amines to yield primary and secondary amines, respectively
Typical N-substituents removes include methyl, ethyl, n-proply, n-butyl, and benzyl |
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The breaking of an ether into alcohols
Increased chain length or branching reduces the rate of dealkylation
Example: codeine metabolized into morphine |
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Part of Phase I Metabolism
Reducing an azo group (-NN-) into two primary amines |
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Part of Phase I Metabolism
Reducing nitro group (-NO2) to primary amine |
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To attach constituents that allow it to be removed from the body (more polar and water-soluble products) |
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What is the function of Phase II Metabolism |
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A glucose is attached to xenobiotic substrates, catalyzed by UDP-glucoronyltransferases.
Phenols and alcoholic hydroxyls are the most common functional groups to undergo this reaction. |
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Describe glucuronic acid conjugation |
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Refers to a pharmacologically inactive compound that is transformed by the mammalian system into an active substance by either chemical or metabolic means |
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Hard drugs are compounds designed to contain the structural characteristics necessary for pharmacological activity, but in a form that is not susceptible to metabolic or chemical transformation. Toxic metabolites are avoided, efficiency of action is increased, and less readily elimination is reduced.
Soft drugs are active compounds that after exerting their desired pharmacological effect are designed to undergo metabolic inactivation to give a nontoxic product. These are considered to be the opposite of prodrugs. |
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Discuss the difference between hard drugs and soft drugs |
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Carrier-linked prodrugs are drugs which have been attached through a metabolically labile linkage to another molecule.
Bioprecursor prodrugs are drugs that contain no promoiety, but rather rely on metabolism to introduce the function necessary to create an active species. |
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Describe the two different classifications of prodrugs. |
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Polymer-drug (conjugates)
Dendrimers
Micelles |
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Types of Polymeric Drug Delivery Systems |
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A drug molecule attached to a PEG backbone, possibly with a targeting moiety |
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Describe Polymer-Drug Conjugates |
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Advantages
- Slow degredation time
- water soluble
- avoid liver and spleen
- control where and when drug is released
Disadvantages
- Low drug-carrying capacity (PEG carries only 2 drug molecules)
- Formation of structures due to folding
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Advantages and Disadvantages of Polymer-Drug Conjugates |
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Drug Release by enzymatic cleavage or hydrolysis |
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Drug Release of Polymer-Drug Conjugates |
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Highly branched molecule with carrying capacity that deals with side-chain chemistry. Therefore molecule may be able to carry 1 drug molecule per 2 chains, 2 drug molecules per 1 chain, or something completely different. |
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Advantages
- Higher carrying capacity (up to 25% of wt.)
- small size
- snythesis is much easier and consistent
Disadvantge
Move in and out of tumor tissue very rapidly |
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Advantages and Disadvantages of Dendrimers |
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Drug release by light (EM pulse) and or acid |
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Drug Release by Dendrimers |
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micelles with PEG or another hydrophilic head and AA as the hydrophobic tail. The drug is inside the hydrophobic region of the micelle. Targeting promoieties may be put on the hydrophilic head. |
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Describe micelle drug-delivery system |
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Advantage
May be viewed as "natural biomolecule
Disadvantage
Low carrying capacity |
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Advantages and Disadvantages of Micelle Drug Delivery |
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