Shared Flashcard Set

Details

P3 - Genomics - Exam 3
P3 - Genomics - Exam 3
53
Pharmacology
Professional
11/10/2012

Additional Pharmacology Flashcards

 


 

Cards

Term
Lab-on-a-chip
Definition
a device that integrates one or several laboratory functions on a single chip of only millimeters to a few square centimeters in size
Term
Microfluidics
Definition
a broader term that describes also mechanical flow control devices like pumps and valves or sensors like flowmeters and viscometers
Term
Single-Gene disease
Definition
disease type expressed in a Mendelian fashion and associated with only one gene as its cause; not the most common
Term
Complex disease
Definition
disease that is not expressed in a Mendelian fashion and one involving multiple genes and multiple gene products interacting with each other, other gene products, and the environment to produce the observed phenotype
Term
Continuous trait
Definition
trait that exhibits a range of phenotypes (quantitative trait)
Term
Quantitative Trait Loci (QTL)
Definition
the location of the genes that are used to define continuous traits
Term
Genome/Genotyping
Definition
scanning technique used to identify variant alleles and examine association with phenotypic expression of the genotypes
Term
Transcriptome
Definition
scanning technique used to identify changes in the mRNAs expressed in specific tissues and examine association with phenotypic expression
Term
Proteome
Definition
scanning technique used to identify changes in protein expression and activity in specific tissues and examine their associations with phenotypic expression
Term
Metabolome
Definition
scanning technique used to identify changes in total small-molecular-weight solutes and metabolites in a given tissue for phenotype associations and changes in metabolites of drugs, either quantitative or molecular, and examine their associations with drug response
Term
Linkage disequilibrium (LD)
Definition
nonrandom association of specific alleles at specific loci with other alleles at nearby loci shared due to ancestry and not found in other families
Term
Intergenic
Definition
polymorphism in this part of the genome usually has no biological effect but it can in some instances
Term
Intron-exon
Definition
polymorphism in this part of the genome may produce splice variants
Term
Promoter region
Definition
polymorphism in this part of the genome may effect transcription by turning the gene on or off abnormally
Term
3' or 5'
Definition
polymorphism in this part of the genome may affect mRNA stability, structure, and/or regulatory functions
Term
Synonymous polymorphism
Definition
type of polymorphism where, even though there is a single nucleotide difference, the end result is the same amino acid; usually occupies the wobble position (3rd BP)
Term
Missense mutation
Definition
a type of nonsynonymous polymorphism where there is a difference of one nucleotide that results in the formation of a completely different amino acid than was intended, altering the amount or function of the protein or having no biological effect at all
Term
Nonsense mutation
Definition
a type of nonsynonymous polymorphism where there is a difference of one nucleotide that results in a stop codon causing the formation of a truncated protein
Term
Tandem repeats
Definition
nucleotide sequences that are repeated in tandem to each other (continuous chain)
Term
Variable number tandem repeats (VNTRs)
Definition
large repeats, as in several hundred base pairs; minisatellites
Term
Simple tandem repeats (STRs)
Definition
small repeats, as in 1-5 bp; microsatellites
Term
Microsatellite variant
Definition
variations between individuals that occur in less than 1% of the population
Term
Microsatellite instability (MSI)
Definition
a variation in the number of repeats in diseased cells of an individual compared to the number of repeats in the same individual’s normal cells
Term
Oncogene
Definition
mutant cancer-promoting gene
Term
Loss of Heterozygosity (LOH)
Definition
loss of the entire chromosome or the segment carrying the wild-type gene
Term
Tumor suppressor gene
Definition
gene that actively regulates cell cycle pathways, preventing cancer that results from uncontrolled mitosis
Term
p53
Definition
mutation of this gene is implicated in nearly 50% of all tumors
Term
Epigenetic effect
Definition
changes in gene activity that are unrelated to changes in the primary DNA sequence
Term
CpG island
Definition
epigenetic effect caused by sequences with several non-tandem CG repeats (NOT a microsatellite) that are methylated at the P molecule between the C and G resulting in gene silencing
Term
Gene silencing
Definition
he "switching off" of a gene by a mechanism other than genetic modification
Term
Hardy=Weinberg equilibrium
Definition
calculation of the expected frequencies of alleles in a population, assuming random inheritance of the alleles (Mendelian)
Term
Positional cloning
Definition
gene detection strategy where the pattern of co-segregation of markers and disease phenotype through generations within families are examined allowing clinicians/researchers to estimate the chromosomal location of the candidate disease susceptibility gene and determine the gene that is responsible
Term
Additive effect
Definition
In complex disease, the total effect of two genes is the addition of the two effects together – 2 + 2 = 4
Term
Synergistic effect
Definition
In complex disease, the total effect of two genes is more than the sum of the two effects – 2 + 2 = 6
Term
Partially antagonistic
Definition
In complex disease, the total effect of two genes is limited by competition of the two effects – 3 + 1 = 2
Term
Nullifying
Definition
In complex disease, the total effect of two genes cancel each other out - +2 + -2 = 0
Term
Protective
Definition
In complex disease, the negative effect of one gene has beneficial effects overall – +2 + -4 = -2
Term
Eugenics
Definition
the “science” of improving human stock by humanity taking control over its own evolution
Term
Positive eugenics
Definition
ensuring that “desirable” races and “strains of blood” prevailed and multiplied
Term
Negative eugenics
Definition
a way of reducing or eliminating “bad genes” from the gene pool
Term
Charles Davenport
Definition
Harvard professor and American leader of eugenics movement who thought races and nationalities reflect biological differences manifesting distinct racial traits, believed that immigration from Southern Europe would hurt American population, and presented information like it was scientific evidence when there was nothing to back it up
Term
Henry Goddard
Definition
eugenecist that believed the mentally deficient were “a vigorous animal organism of low intellect but strong physique – the wild man of today” and whose notions resulted in public policies
Term
Buck vs Bell
Definition
1927 case upheld by the Supreme Court as constitutional allowing the involuntary sterilization of a woman deemed an imbecile due to inherited feeblemindedness
Term
Lewis Terman
Definition
American eugenecist who believed the over 200 years 1000 Harvard grads would have 56 descendents and 1000 South Italians would have 100,000 thus overpowering the "gifted" children with "inferior genes"
Term
Nonmaleficence
Definition
principle of healthcare meaning to do no harm, to remove harm and to prevent harm
Term
Beneficence
Definition
principle of healthcare meaning to do good
Term
Pate v. Threlkel
Definition
1995 Florida Supreme Court case finding a physician negligent for not informing patient her thyroid cancer was inherited but found he had no right to tell the patient's daughter about her mother's inherited condition
Term
Safer v. Pack
Definition
New Jersey Superior Court case that found that a physician was obligated to inform a patient's daughter of her risk for inheriting her father's condition of multiple polyposis of the colon thereby endangering her life
Term
Genetic Information Non-discrimination Act of 2008 (GINA)
Definition
law that protects Americans from being treated unfairly because of differences in their DNA that may affect their health
Term
George-Louis Leclerc
Definition
18th century French naturalist who wrote a 1749 article using “race” in scientific discussion of human groups
Term
Carolus Linneaus
Definition
Swedish naturalist who developed organismal classification system and in a 1758 article described 4 human races
Term
Nonconcordance
Definition
describes when genes for a measured trait are not linked
Term
Endogamy
Definition
marriage within a specific group as defined by custom or law
Supporting users have an ad free experience!