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Organic Chemistry terms
Definitions of basic terms used in the basis of biological chemistry
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Biology
Undergraduate 1
09/12/2010

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Term
Organic Molecules
Definition
Carbon-containing molecules including lipids and macromolecules
Term
Macromolecules
Definition
Large complex compounds including carbohydrates, proteins, and nucleic acids
Term
Hydrocarbons
Definition
Molecules with predominantly hydrogen-carbon bonds.  They are poorly soluble in water and have nonpolar bonds due to the similar electronegativity between hydrogen and carbon
Term
Functional groups
Definition
Amino, Carbonyl, Carboxyl, Hydroxyl, Methyl, Phosphate, Sulfate, Sulfhydrl
Term
Isomers
Definition
Two structures with identical molecular formulas but different structures and characteristics. Two types: Structural isomers and Stereoisomers
Term
Structural isomers
Definition
Two molecules that contain the same atoms but in different bonding relationships
Term
Stereoisomers
Definition
Two molecules that have identical bonding relationships but different spatial positioning of the atoms. Two types: Geometric isomers and Enantiomers
Term
Geometric isomers
Definition
Differing positions of two atoms relating to the side of the carbon they are attached to. If the atoms are on the same side they are called "cis" and if they are on opposite sides they are "trans"
Term
Enantiomers
Definition
A pair of molecules that are mirror images of each other
Term
Polymers
Definition
Large molecules that are formed by linking together many smaller monomers
Term
Carbohydrates
Definition
Macromolecules composed of carbon, hydrogen, and oxygen atoms.
Term
Monosaccharides
Definition
Simple sugars. The most common types are pentose (ribose and deoxyribose) and hexose (glucose, fructose, and galactose)
Term
Disaccharides
Definition
Carbohydrates composed of two sugars. Example: Sucrose, which is made of a glucose molecule and a fructose molecule
Term
Polysaccharides
Definition
Long polymers of many carbohydrates, including starch and glycogen
Term
Starch
Definition
A polysaccharide made up of thousands of alpha-D-glucose molecules and found in plant cells that are used to store energy
Term
Glycogen
Definition
A polysaccharide made up of thousands of alpha-D-glucose molecules and found in animal cells that are used to store energy. They are highly branched to allow for solubility
Term
Cellulose
Definition
A polysaccharide made of beta-glucose molecules that provide a structural role in plant cells
Term
Chitin
Definition
A structural polysaccharide that forms the external skeleton of many insects and the cell walls of fungi
Term
Glycosaminoglycans
Definition
Large polysaccharides that play a structural role in animals, namely in cartilage
Term
Lipids
Definition
Molecules composed predominantly of hydrogen and carbon atoms. They are nonpolar and therefore insoluble in water
Term
Triglycerides
Definition
A type of lipid (fat) that is made by bonding glycerol to three chains of fatty acids (a chin of carbon and hydrogen atoms with a carboxyl group at the end)
Term
Saturated fatty acid
Definition
A fatty acid in which the carbons are linked by single covalent bonds
Term
Unsaturated fatty acid
Definition
A fatty acid in which one or more of the carbons are linked by a double bond (C=C)
Term
Phospholipids
Definition
A triglyceride in which the third hydroxyl group of glycerol is linked to a phosphate group instead of a fatty acid. Usually, a small polar nitrogen-containing molecule is attached to the phosphate
Term
Steroids
Definition
A type of lipid made up of four fused rings of carbon atoms as well as a small amount of various other molecules attached
Term
Proteins
Definition
Macromolecules composed of carbon, hydrogen, oxygen, nitrogen, and small amounts of other elements, notably sulfur. They are polymers of amino acids.
Term
Amino acids
Definition
Protein monomers where an alpha-carbon is linked to an amino group (NH2) and a carboxyl group (COOH), as well as a hydrogen atom and a side chain R
Term
Peptide bond
Definition
The covalent bond formed between a carboxyl group and an amino group. a polypeptide is formed when many amino acids are joined together by peptide bonds
Term
Nucleic acids
Definition
Polymers of nucleotides that include DNA and RNA
Term
Nucleotides
Definition
Nucleic acid monomers composed of a phosphate group, a pentose, and a single or double ring of carbon and nitrogen atoms known as a base
Term
Adenine and Guanine
Definition
Purine bases of nucleotides that have double fused rings of nitrogen and carbon atoms
Term
Cytosine and Thymine
Definition
Pyrimidine bases of nucleotides that have a single ring of nitrogen and carbon atoms
Term
Uracil
Definition
A pyrimidine base found exclusively in ribonucleotides that replaces thymine
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