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Oceanography 2
University of Delaware text: Invitation to Oceanography Paul Pinet
69
Biology
Undergraduate 1
04/13/2010

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Term
six major coastal settings
Definition
Littoral Zone
Estuary
Lagoon
Salt Marsh
Mangrove swamp
Coral Reef
Term
Zonation reflects the:
Definition
-amount of time the area is submerged
-ability of the organism to survive the stress of exposure
Term
3 parts of the littoral zone.
Definition
Supralittoral-always exposed
Eulittoral-sometimes exposed
Sublittoral-never exposed
Term
Estuaries
Definition
Semi-enclosed body of water where fresh
water mixes with salt water
Term
4 types of Estuaries
Definition
Drowned river valley Estuary
Fjords Estuary
Bar-built Estuary
Tectonic Estuary
Term
Lagoon
Definition
Found at any latitude
Calm shallow bodies of water
Salinity varies: brackish- hypersaline
Sediments usually sand or mud
Term
Salt Marshes
Definition
Intertidal flats covered by grassy vegetation

Commonly found in protected areas with moderate
tidal range, such as landward sides of barrier islands

Most productive environments on the planet!
Term
4 important facts about salt marshes
Definition
Trap sediments and reduce sedimentation in the main estuary
Absorb excess nutrients & contaminants
Prevent coastal erosion & flooding
Productivity supports estuarine food webs –provide plenty of habitat
Term
how do plants tolerate salt
Definition
salt glands
Term
benefits of mangrove trees
Definition
Alleviate predation pressure

Daytime refuge for nocturnal fish species

Lots of food for fish!

Shoreline protection

Trap sediments from shore that could smother coral reefs

Cleanse nearshore water by uptake of nutrients
Term
parts of a coral
Definition
The animal is the coral polyp.
The corallite is the exoskeleton formed by the polyp
Term
parts of a coral
Definition
The animal is the coral polyp.
The corallite is the exoskeleton formed by the polyp
Term
Corals share a mutualistic relationship (mutually beneficial) with zooxanthallae (unicellular algae); called mutuallsm
Definition
Term
health for corals
Definition
Corals can be either solitary or colonial.

Coral reefs flourish in water that is warmer than 20º C
They are found in tropical and subtropical latitudes.

Corals cannot survive in fresh, brackish water or highly turbid water.

Corals do best in nutrient poor water.
They are easily out-competed by benthic filter feeders in nutrient-rich water (where phytoplankton and seaweed are abundant).
Term
the morphology of coral reefs
Definition
Coral reefs consist of several distinct parts developed in response to their exposure to waves
Term
forms of coral reefs (examples)
Definition
Encrusting coral
Branching coral
Brain Coral
Term
fringing reefs
Definition
Term
barrier reef
Definition
When the lagoon begins to separate the fringing reef from the shoreline
Term
atoll
Definition
In the final stage, the land vanishes below the sea and the reef forms a ring of islands surrounding a shallow lagoon.
Term
importance of coral reefs
Definition
tourism
storm protection
biodiversity
stabilize social structure
Term
threats to coral reefs
Definition
coastal development and pollution
dynamite and cyanide fishing
overfishing
coral bleaching
Term
threats to coral reefs
Definition
coastal development and pollution
dynamite and cyanide fishing
overfishing
coral bleaching
Term
the 3 domains
Definition
bacteria
eukaryote
Archaea
Term
five major kingdoms
Definition
Monera
bacteria, including cyanobacteria (blue-green algae)
Protista
single-celled organisms with a nucleus
Fungi
abundant in the intertidal zone and are important in decomposition
Chromista
Plants, free-floating or attached to the sea floor
Metazoa
all multicellular animals in the ocean
Term
plankton
Definition
marine organisms that float in the water and have no ability to propel themselves against a current
Term
nekton
Definition
active swimmers and include:
fish,
Reptiles
mammals
birds
Term
benthic
Definition
organisms that live:
on the bottom (epifauna)
within the bottom sediments (infauna)
Term
examples of environmental factors in a marine environment
Definition
Temperature
Salinity
Pressure
Nutrients
Dissolved gases
Currents
Light
Suspended sediments
Substrate (bottom material)
River inflow
Tides
Waves
Term
ecosystem
Definition
the total environment including the:
biota (all living organisms)
non-living physical and chemical aspects
Term
temperature can control (3 things) in an organisms life
Definition
distribution
degree of activity (Generally, rate of biological activity of marine organisms tend to double for every 10 degree rise in water temperature.)
Reproduction
Term
salinity
Definition
Can control the distribution of organisms
–Many marine invertebrates have similar salt content to that of seawater
–Most marine fishes body fluids are lower in salt content than seawater
Term
Hydrostatic pressure
Definition
exerted by a column of water above an organism
On average, hydrostatic pressure increases with water depth at a rate of ~ 1 atm/10 m of water column
Fishes of the mesopelagic and shallower
have a gas bladder and can be killed by
a sudden change in hydrostatic pressure
Term
Plankton
Definition
Includes both phytoplankton (plants) & zooplankton (animals)
More than 90% of ocean plant species are algae—simple plants—no roots, stems, leaves, flowers or seeds—
Most algae are phytoplankton—free floating, virtually invisible plant life
Term
terrestrial vs. marine plants
Definition
Plants on land are relatively large.

They transfer nutrients and water to their leaves through a vascular system.
Marine plants are typically microscopic and unicellular.

They absorb nutrients from seawater through their cell walls.
Term
photic zone
Definition
zone in which plants must reside to photosynthesize (make their own food from sunlight)
Term
diatoms
Definition
single-celled plants enclosed in a rigid frustule (shell) composed of silica that is shaped like a pillbox—when silica concentrations low, diatom growth is limited.
is an example of phytoplankton
Term
dinoflagellates
Definition
single-celled plants with two whip-like tails (flagella)

Their theca or cell wall is composed typically of cellulose, an inert carbohydrate that is a common cellular ocmpoent of plants and wood

Some dinoflagellates are naked—have no protective theca
Term
Foraminifera
Definition
single-celled animals which build shells of calcium carbonate.
Term
Copepods
Definition
small herbivores (plant-eating organisms) that filter diatoms from the water.
Term
what are the 3 types of drag a fish's body must overcome?
Definition
The fish’s body must overcome three types of drag (resistance):
surface drag- body and water
form drag- water that must be moved for fish to move
turbulent drag-turbulance around body as it moves
Term
Aspect Ratio
Definition
the ratio of the square of the caudal fin height to caudal(tail) fin area:
AR = (Caudal Fin Height)2/Caudal Fin Area
Term
3 basic fish body forms
Definition
1. Torpedo shape: (tuna) ideal for efficient high speed cruising
2. Elongated shape (pike) ideal for sudden lunging motion
3. Wide shape (butterfly fish) ideal for great maneuverability and delicate movements.
Term
speed of a fish is dependent upon
Definition
body length
beat frequency
the aspect ratio of the caudal fin
Term
Benthic Community Distribution
Definition
–recall the vertical zonation of the rocky intertidal
-Intertidal benthic communities generally are arranged in distinctive bands, termed vertical zonation
–Intertidal zonation of mud and sand bottoms reflects the amount of time the area is submerged & the ability of the organisms to survive the stress of exposure
Term
Infauna
Definition
animals that burrow into soft substrates, such as sand and mud
Term
Challenges faced by infauna include(3)
Definition
Displacing sediment (digging/burrowing)
Constructing structurally sound burrows
Protecting their tissues from abrasive sediment
Term
Benefits of being infaunal include: (3)
Definition
Protection from predators
Protection from wave energy
Protection from desiccation
Term
Trophic dynamics
Definition
nutritional connections among organisms
Term
An ecosystem is the totality of the environment encompassing all parts: (4)
Definition
Chemical
Physical
Geological
Biological
-Ecosystems function by the exchange of matter and energy
Term
Nitrogen Cycle
Definition
NH3 + 2 O2 → H+ + NO3- + H2O
Ammonia is oxidized to nitrate
Nitrate is a vital plant nutrient (animals can’t use it, but algae can)
Bacteria are vital for the primary production-to-consumer food chain
Think of bacterial decomposition as the starting point (regenerating nutrients for primary production) and the end point (decay of organic matter)
Term
2 basic types of bacteria
Definition
aerobic-require oxygen
anaerobic-don't require oxygen-Instead of O2, use SO4-2 (sulfate)
and release H2S (hydrogen sulfide
gas) as a by-product of decay
Term
2 types of autotroph bacteria
Definition
cyanobacteria (blue-green algae)
chemosynthetic bacteria
Term
The two major food chains in the ocean are:
Definition
the grazing food chain
the Detritus food chain (non-living wastes form the base of the food chain)
Term
General Marine Productivity
Definition
Primary production is the total amount of carbon (C) converted into organic material per square meter of sea surface per year

(gm C/m2/yr)
Term
Redfield ratio
Definition
Phytoplankton generally require carbon, nitrogen and phosphorus in the ration of 116:16:1
N and P are typically limiting factors
Term
Annual primary production
Definition
Annual primary production (APP) is equal to primary production rate (PPR) times the area for which the rate is applicable.
APP = PPR x Area

Transfer efficiency (TE) is a measure of the amount of carbon that is passed between trophic levels and is used for growth.
Transfer efficiency varies from 10 to 20% in most food chain.
Term
Potential production
Definition
Potential production (PP) at any trophic level is equal to the annual primary production (APP) times the transfer efficiency (TE) for each step in the food chain
PP = APP x TE (for each step)
Term
Extreme Environments–Deep Sea Vents
Definition
Black smoker hydrothermal vents
Cold methane seeps
Carbonate hydrothermal vents
Term
Black Smoker Hydrothermal Vents
Definition
Oasis of life in a highly toxic environment!
Found in the central rift of deep sea spreading zones
Existed for millions of years, but each independent community is highly ephemeral due to the volcanic activity of the vent itself
Term
Depending on the fluid temperature and minerals it contains,
the smoky precipitate can look black or white:
Definition
Black smokers emit hot water containing sulfides of iron and other metals

White smoker fluid is cooler and contains dissolved compounds of barium, calcium and silicon.
Term
How black smoker vents form:
Definition
Water mixes with magma to 200 to 400°C, leaches metals from basalts as it leaks out of cracks
As mineral-laden hydrothermal fluid cools, minerals precipitate out of solution, thus a dense cloud that looks like smoke
Term
Chemosynthesis
Definition
performed by chemoautotrophic bacteria:
CO2 + H2S + O2 + H20 → CH20 + H2SO4
The oxidation of hydrogen sulfide to sulfate provides vent bacteria the energy needed to produce organic matter
Analogous to photosynthesis in that carbon is “fixed” From CO2
Origins for biogenesis and perhaps initial life on the planet
Term
Basis of the vent food chain:
Definition
Thiotrophic: sulfur oxidizing
Methanotrophic: methane oxidizing
Term
Riftia vent worm
Definition
no digestive system or mouth uses 2 kinds of gill structures to 1) extract O2 out of the water & 2) holds chemosynthetic bacteria for making sugars
Term
Cold Methane Seeps
Definition
May not be true “seeps” exposed to
ground water, but areas of sediment
Erosion after landslides or strong currents
-longer lived than hydrothermal vents
-release methane gas and H2S
Term
Carbonate Hydrothermal Vents
Definition
-Spreading and faulting occurred ~1 million years ago
-Water permeates deep into the earth and reacts with the mantle rock to form serpentinite and other compounds, resulting in a basic fluid (high pH), about 200°C, rich in calcium carbonate which forms the towers.
-abiotic hydrocarbon production
-microbes live off of methane
and hydrogen
Term
Invasive Species
Definition
Collectively referred to as introduced species
Once the organism begins to displace native species, it is often referred to as an invasive species
Term
Not all non-natives are nuisances:
Definition
Fisheries biologists have introduced striped bass to many inland lakes across the U.S.
In most cases this has provided a benefit to humans and not disrupted the balance of native species.
However, introducing species is a job for professional biologists and not the general public.
Term
Ballast
Definition
any material used to weight and/or balance an object.

Ballast water is carried by ships to ensure stability, trim and structural integrity–been used since the 1880s
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