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Nucleotide Biosynthesis
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Biochemistry
Professional
01/09/2012

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Term
nucleotide
Definition
consists of a nitrogenous base
a pentose monosaccharide
and a number of phosphate groups

nitrogenous base is linked by a beta-glycosidic bond from the 1'-position
Term
nucleoside
Definition
consits of the nitrogenous base and pentose sugar

NO PHOSPHATE GROUP
Term
[image]
Definition
Adenine
Term
[image]
Definition
Cytosine
Term
[image]
Definition
Guanine
Term
[image]
Definition
Thymine
Term
[image]
Definition
Uracil
Term
Purine bases
Definition
numbered from 1 to 9

beta glycosidic bond at N9

os- added to indicate sugar (adenosine)
Term
Pyrimidine bases
Definition
numbered from 1 to 6

linked to pentose sugars via N1

d added to indicate sugar (cytidine)
Term
5 roles of nucleoties
Definition
activated precursors of DNA and RNA

derivatieces are activated intermediates in biosynthesises

ATP is currency of energy, GTP hydrolysis is essential for macromolecualr translocation events

Adenosine nucleotides are components of major coenzymes

participate in regulatory signaling systems
Term
Purine/ pyrimidine deficiency states
Definition
rare in humans

occasionally occurs during pregnancy, owing to increased folate requirements

condition is manifested as megaloblastic anemia

can also arise from vitamin B12 deficiency due to poor utilization of N5-methyl tetrahydrofolate
Term
1st step in Purine Biosynthesis
Definition
Ribose 5- phosphate derived from ppp is converted to PRPP by PRPP synthetase

inhibitor of this step are purine ribonucleotides, activator free phosphate
Term
2nd step in Purine Biosynthesis
Definition

Rate-limiting and committed step of purine biosynthesis

synthesis of 5' phosphoribosylamine

 

glutamine donates an amide group which replaes pyrophosphate on the 1 carbon configuration of C-1 is alpha

 inhibitors are amp, gmp, imp activator : prpp

Term
3rd step in Purine Biosynthesis
Definition
several steps convert 5'-phosphoribosylamine into inosine 5'-monophosphate, the progenitor of all purine nucleotides
Term
Purine Atoms from where
Definition
Aspartate - N1
N10-formyl-tetrahydrofolate - C2, C8
Glutamine N9, N3
Glycine N7, C5, C4
CO2 C6
Term
Sulfonamides
Definition
PABA analogs

inhibit bacteial production of folic acid

humans do not produce foic acid de novo, thus unaffected

antibacterial, need folic acid to make purines
Term
Methotrexate
Definition
Folate analog

inhibits mammalian dihydrofolate reductase this depletes the N10-formyl-tetrahydrofolate required for purine synthesis

inhibits DNA replication and cell prolif in cancer cells

significant toxicity to cells rapidly growing ie hair, WBC, epithelium

depletion of tetrahydrofolate inhibits dTMP production by limiting the supply of N, N10 methylene-tetrahydrofolae
Term
Trimethoprim
Definition
Folate analog

inhibits purine biosynthesis in prokaryotes by selectively inhibiting bacterial dihydrofolate reductase

used frequently for urinary tract infection
Term
IMP to AMP
Definition
IMP is transformed to adenylosuccinate then to AMP

first step inhibited by AMP

GTP is utilized as an energy source
Term
IMP to GMP
Definition
IMP is converted to xanthosine nonophosphate (XMP) then to GMP

first step inhibited by GMP

ATP utilized as an energy source

can inhibit their own specific synthesis but leave the other alone
balance kept by cross talk
Term
Mycophenolic Acid
Definition
drug is a reversible uncompetitive inhibitor of inosine monophosphate dehydrogenase

the drug deprives rapidly proliferating T and B cells of key components of nucleic acids

prevent graft rejection by inhibiting GMP synthesis

t and b cells do not use recycling of nucleotdies and only use de nove and are more suseptible than other cells
Term
base-specific kinases
Definition
convert nucleoside monophosphates to diphosphate forms

donor ATP, no distinguish from ribos v deoxy
Term
general kinases
Definition
converts nucleoside diphosphate to triphosphate

donor ATP, no distinguish from ribos v deoxy
Term
Ribonucleotide reductase
Definition
conversion of ribonucleotides to deoxyribonucelotides

4 enzyme subunits (2 b1, 2 b2)

specific nucleotides bind to b1 subunit, diphosphate substrates enter between the b1 and b2 subunits

involves formation of a disulfide bond
Term
Thioredoxin
Definition
regenerates the ribonucleotide reductase by reduction of the formed disulfide bond
Term
Purine Salvage
Definition
purines recovered from cellular nucleic acid turnover or dietary intake

couples free purines to PRPP using one of two enzymes with loss of pyrophosphate
Term
Hypoxanthine-guanine phosphoribosyltransferase (HPRT)
Definition
purine salvage

converts Hypoxanthine + PRPP to IMP

Guanine + PRPP to GMP
Term
Adenine phosphoribosyltransferase (APRT)
Definition
Adenine + PRPP to AMP
Term
Lesch-Nyan syndrome
Definition
X-linked

deficiency in HPRT

decreased IMP and GMP concentrations activate endogenous purine synthesis at the committed step

increased purine synthesis results in overproduction of uric acid

leads to gout, urate kidney stones, neurological disorders (involountary self-mutatalation)

die by 20 of massive kidney failure
Term
Degradation of dietary nucleic acids
Definition
occurs in the small intestine

very little is actually used for tissue nucleic acids

generally degraded to uric acid in the intestinal mucosa
Term
Steps for degradation of cellular purine nucleotides
Definition
1. adenine is deaminated (AMP or adenosine)

2. IMP and GMP are converted into nucleoside forms by 5'nucleotidase

3. The sugar moieties are removed yielding guanine adn hypoxnthine

4. deamination of guanine gives xanthine

5. xanthine oxidase converts hypoxanthine to xanthine

6. subsequent oxidation of xanthine genreates uric acid, which is excreted in the urine
Term
Gout
Definition
caused by overproduction or underexcretion of uric acid

leads to deposition of sodium urate in tissues especially in kidney and joints

induces an inflammatory response involving granulocyte recruitment
Term
allopurinol
Definition
treatment of gout resulting from overproduction of uric acid

metabolized to form an inhibitor of xanthine oxidase which results in accumulation of hyoxanthine and xanthine which is more soluble than uric acid
Term
Adenosine Deaminase deficiency (ADA)
Definition
autosomal recessive loss of adenosine deaminase

this prevents deamination of adenosine to inosine resulting in accumulation of adenosine and releate nucleotides

increased dATP inhibits ribonucleotide reductase, thus depleting cellular pools of dNTPs for DNA synthesis

inhibition of DNA synthesis prevents proliferation of B and T cells and is manifested as severe combined immunodeficiency disease
Term
Pyrimidine synthesis
Definition
not assembled on a PRPP scaffold

construted from basic components to form the 6-mem orotate ring which is then transferred to PRPP
Term
Mammalian pyrimidine synthesis
Definition
regulateed at the first step, catalyzed by carbamoyl phosphate synthetase II

inhibited by UTP
activated by ATP and PRPP
Term
Prokaryotes pyrimidine synthesis
Definition
sythesis of pyrimidines is regulated at the second step by aspartate transcarbamoylase

inhibited by CTP

all pyrimideine nucleotides are derived from a UMP precursor
Term
Contributors to pyrimidine ringe
Definition
Aspartic Acid C4, C5, C6, N1
Glutamine N3
CO2 C2
Term
Orotic aciduria
Definition
2 reactions required for synthesis of UMP are catalyzed by a common protein, involving different protein domains

genetic UMP synthase deficiency prevents UMP formation results in growth abnormalities, megaloblastic anemia, urinary excretion of orotate

diet rich in uridine improves the anemia and decreases orotate excretion
Term
CTP synthesis
Definition
ctp is generated by amination of UTP at C4 by CTP synthetase

glutamine serves as the amino donor
Term
dTMP synthesis
Definition
generated by methylation of dUMP at C by thymidylate snythase

N5, N10- methylene-tetrahydrofolate is the methyl donor
Term
5-fluorouracil
Definition
an antitumor agent that is converted to 5-fluro dUMP which inhibits thymidylate synthetase via irreversible binding

prevents formation of dTMP, thus limiting DNA synthesis in rapidly dividing cells
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