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Nucleic Acids
exam #3
67
Biology
Undergraduate 2
12/02/2008

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Term
Codons
Definition
3 nucleotides that codes genetic information
Term
Replication
Definition
process by which a replica or an identical copy of DNA is made when a cell divides. semi-conservative
Term
Transcription
Definition
process by which genetic messages in the DNA are read and copied; products are RNA molecules
Term
Translation
Definition
process by which the info in RNA builds proteins
Term
Replication of DNA steps
Definition
unwinding of helix by helicase
strands separate exposing branch points; replication forks (bubbles)
DNA polymerases move into bubbles and catalyzes single-stranded DNA
4 dNTPs H bond to 5' P and 3' OH
Term
DNA can only read and grow in what direction?
Definition
read 3' to 5'
grow 5' to 3'
Term
Lagging Strand
Definition
the strand that doesn't continuously grow. Replication in short 3' to 5' segments (Okazaki fragments) joined by DNA ligase
Term
Ribosome
Definition
structure in the cell when protein synthesis occurs; proteins and RNA
Term
Ribosomal RNA (rRNA)
Definition
RNA that is complexed with proteins in ribosomes
Term
Messenger RNA (mRNA)
Definition
RNA that carries the code transcribed from DNA and directs protein synthesis
Term
Transfer RNA (tRNA)
Definition
RNA that transports amino acids into position for protein synthesis
Term
Transcription Process
Definition
RNA synthesized in cell nucleus; before they are modified to enable them to perform their different functions. Same process as replication except only one DNA strand is transcribed (template strand)
Begins at start site, RNA polymerase moves down DNA template strand until stop codon.
At the end, hnRNA contains matching base for each in template that codes (except for introns)
Term
Exon
Definition
nucleotide sequence in a gene that codes for part of a protein
Term
Intron
Definition
nucleotide sequence in mRNA that doesn't code for a protein; removed before mRNA proceeds to synthesis
Term
Spliceosome
Definition
cuts out introns from nhRNAs
Term
Genetic Code
Definition
the sequence of nucleotides, coded in triplets in mRNA that determines the sequence of amino acids in proteins
Term
Reverse Transcription
Definition
converting RNA to DNA; a retrovirus (HIV)
Term
Chromatin
Definition
compact tangle of DNA
Term
Chromosome
Definition
complex of proteins and DNA; visible during cell division
Term
Nucleotide
Definition
3 parts; 5-membered monosaccharide ring, N-containing cyclic base, and phosphate group
Term
RNA sugar
Definition
D-ribose
Term
DNA sugar
Definition
2-deoxyribose
Term
Bases present
Definition
AGC- both
U- RNA
T- DNA
Term
Nucleoside
Definition
Sugar and base
Term
Nucleotides are connected by what linkage?
Definition
phosphate diester between -OH group on C3 and phosphate group on C5
Term
# of H bonds between bases
Definition
G-C has 3
A-T has 2
Term
Shape of tRNA
Definition
cloverleaf; contains stems and loops. Top is anticodon, bottom is amino acid. H bonds between bases
Term
3 steps in translation
Definition
initiation, elongation and termination
Term
Initiation
Definition
in nucleus: small ribosomal subunit is attached to mRNA,charged tRNA goes to site P, large sunubity joins complex, anticodon pairs with codon of mRNA, 2nd charged tRNA goes to site A
Term
Elongation
Definition
bond forms between 2 amino acids, uncharged tRNA leaves P site, tRNA hat carries chain moves from A to P site, 3rd tRNA comes to A site, ribosome moves one codon along mRNA in 3' direction
Term
Termination
Definition
ribosome hits stop codon
Term
Human Genome
Definition
25,000 genes, 1.5% codes for proteins, rest is regulatory sequences, introns and junk DNA
Term
Telomeres
Definition
ends of chromosones; repeating nucleotides that protect ends from breakage
Term
Centromeres
Definition
center of chromosomes; form constrictions that appear in duplicated chromosomes during cell division and are important in alignment
Term
Chromosomal Crossover
Definition
exchange of genes during alignment; genetic recombination
Term
Regulators
Definition
regulatory sequences that determine when a gene is turned on or off; promoters
Term
Telomerase
Definition
enzyme responsible for adding telomeres to DNA. Declines activity with aging.
Term
Errors more costly in DNA or RNA?
Definition
DNA because it is passed on after replication; lots of RNA molecules
Term
Mutation
Definition
eroor in base sequence that is carried along during DNA repkication
Term
Mutagen
Definition
causes errors in nucleotides during replication
Term
Point Mutation
Definition
single base change (nucleotide)
Term
Silent mutation
Definition
point; change that specifies same amino acid
Term
Missense mutation
Definition
point; change that specifies a different amino acid
Term
Nonsense mutation
Definition
point; change that produces a stop codon
Term
Frameshift
Definition
number of inserted or deleted bases is not a multiple of 3, so all triplets following mutation are read differently
Term
Insertion
Definition
Frame; addition of one more more bases
Term
Deletion
Definition
loss of one or more bases
Term
Polymorphism
Definition
variation in DNA within a population
Term
Single-nucleotide polymorphism (SNP)
Definition
replacement of a nucleotide. Hair color to disease or death
Term
Restriction fragment length polymorphism
Definition
RFLP; replacement is at restriction site
Term
Recombinant DNA
Definition
combines 2 or more DNA fragments to produce a DNA. insert DNA of interest into carrier (vector, plasmid)
Term
Restriction endonucleases
Definition
cut DNA (digestion) at specific sequences leaving blunt or overhanging (sticky) ends
Term
Primers
Definition
prime or start reactions
Term
Probes
Definition
probe or detect a sequence of interest
Term
Primers and probes work because...
Definition
1. complementary strands align and bond 2. H bonds stabilize strands or sequences
Term
Hybridization
Definition
DNA strands align and bond
Term
Inducible promotor
Definition
allows production of DNA to be controlled
Term
Why is a heat stable polymerase needed in PCR?
Definition
DNA would denature (unwind) if it was heat sensitive
Term
Basics of cloning
Definition
vector and the DNA of interest are cut to generate compatible ends and a DNA ligase seals them together (recombiant DNA). Then put in cells to make DNA of interest.
Term
Oglionucleotide
Definition
probe (detects DNA of interest)
Term
Basics of fingerprinting
Definition
restrictive endonuclease recognizes and cuts VNTRs, separate by size by electrophoresis, and transfer fragments onto a membrane and prove to identify VNTRs
Term
Bioinformatics
Definition
application of technology to manage and analyze biological data
Term
Genomics
Definition
study of whole sets of genes and their functions
Term
Genetic engineering
Definition
uses recombiant DNA to alter a genome. Plants enhance ability of crops.
Term
Gene therapy
Definition
alteration of an individual's genetic makeup with a goal of preventing a disease
Term
Pharmacognetics
Definition
study of genetic variation that gives rise to differing response to drugs
Term
Microarrays
Definition
collections of thousands of microscopic spots of DNA fragments placed onto a surface. Detect changes in expression of genes, identify polymorphisms
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