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Myn Lief Test 2
Vocab
127
Biology
Undergraduate 1
10/28/2007

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Term
Prokaryotes
Definition
Single celled organisms, have no nucleus or organelles, DNA located in nucleoid. 
Term
Nucleoid
Definition
Region in prokaryotes where DNA is stored 
Term
Eukaryotes
Definition

Highly complex cells.  Compartmentalized into organelles, DNA in nucleus. 

Term
Nucleus
Definition
Place where DNA is stored, ribosomes are created. 
Term
Nuclear envelope.
Definition

A double membrane structure that surrounds the nucleus. 

Term
Cytoplasm
Definition
Area in cell between the plasma membrane and the nucleus. 
Term
Organelles
Definition
Membrane bound comartments that carry out cell's activities. 
Term
Plasma membrane
Definition
Composed of phospholipids, seperates cell from outside environment. 
Term
Cell theory
Definition

1)  Cells are the smallest living oranisms.  2)  Cells can only come from other existing cells.  3)  All organisms are made out of one or more cells.

Term
Surface to volume ratio
Definition
Cell size limited b/c of this ratio, takes more time for materials to cross cell.  as surface increases, volume becomes huge. 
Term
resolution
Definition
The miniumum distance that two points can be apart and still be distinguished as two serate points.  Human eye = 100 nm
Term
Compound microscopes. 
Definition
Microscope that magnifies in stages using several lenses.  resolution = 200 nm. 
Term
Transmission electron microscope
Definition
Transmits electrons through material.  .2 nm resolution, width of h2 atom. 
Term
cell wall. 
Definition
Only found in plants, gives plants rigid shape, protects it, prevents water loss, composed of cellulose. 
Term
flagellum
Definition
Long, thin rods made of actin filaments that protrude from cell and give the cell locomotion. 
Term
Endomembrane system
Definition
Compartmelization of organelles in eukaryotic cells.
Term

Central vacuole

Definition
organelle in plant cells that stores water, food, and proteins. 
Term
Vesicles
Definition
transport sacs in both plant and animal cells. 
Term

Chromosomes

Definition

DNA units containing tightly wound DNA strands around proteins--histones.  found in nucleus. 

Term
Cytoskeleton
Definition

skeleton in cell which supports / transports organelles and maintains the shape of the cell. 

Term

Nucleolus

Definition
Center of nucleus where ribosomal subunits are created. 
Term

Chromosomes

Definition
where DNA is linearly stored
Term
Chromatin
Definition
CHromosomes are extended into threadlike strands, chromatin. Allows for proteins to monitor gene expression. 
Term
Histones
Definition
Protein spools which DNA is wrapped around
Term
Nucleosomes
Definition
Clusters of histones
Term
Endoplasmic reticulum
Definition
Two parts:   Rough Er: embedded with ribosomes, makes proteins
                  Smooth Er:  Synthesizes lipids
Term
Cisternal space
Definition
The inner region of the ER
Term
Ribosomes
Definition
Coimposed of two subunits, place of translation, where proteins are made. 
Term

Signal proteins

Definition

Proteins that are ready to be exported have signal sequences, tells that they're ready for transport. 

Term

Golgi bodies

Definition
Flattened sacks of membrane. 
Term
Golgi apparatus
Definition
Packaging and export center of the cell.  Recieves and modifies proteins.  Cis face, closest to nucleus, trans face, closest to plasma membrane. 
Term
Cisternae
Definition
Folds of the golgi apparatus
Term
lysosomes
Definition
Membrane bound organelles that contain enzymes which digest food and waste. 
Term
Microbodies
Definition
Plant cells:  enzyme bearing membrane enclosed by vesicles, grow by incorporating lipids and proteins.
Term
Glyoxysome
Definition
Animal cells:  Microbodies that convert fats into carbs. 
Term
Peroxisome
Definition
Catalyzes the removal of electrons from hydrogen atoms. 
Term
Nucleoli
Definition
Dark regions of the nucleus where ribosomes are produced. 
Term
mitochondria
Definition
Power house of the cell, located in both animal and plant cells, creates energy through oxidative metabolism, produces ATP, all mitochondria DNA come from mother.
Term
Cristae
Definition
Inner membrane of mitochondria, where ATP is produced
Term
Intermembrane space
Definition
Space betwen the matrix and the cristae
Term
Chloroplasts
Definition

Photosynthetic organells in plants, creates energy from photosynthesis--plant sunlight

Term
Grana
Definition
Stacked membranes in chloroplasts. 
Term
Thykaloids
Definition
Disks in chloroplasts where photosynthesis takes place. 
Term
Endosymbiosis
Definition
Theory of how chloroplasts and mitochondria were formed, prokaryotes ate other prokaryotes, made the double membrane, and it was found that these prokaryotes had advantages for the cell so they were kept. 
Term
Polymerization
Definition
How individual fibers form.  Identical proteins attract each other and bond. 
Term
Actin
Definition
Long thin fibers responsible for cellular movements. 
Term

Centrosome

Definition
Region that surrrounds the centrioles, which are animal organelles that help assemble the cells microtubules. 
Term
Kinesin
Definition
A motor protein that pulls transport vesicles along microtubule tracks to the cell's outside. 
Term
Dynein
Definition

Motor protein that pulls animal organelles to the centre of the nucleus. 

Term

9+2 structure

Definition
Eukaryotic flagella structure, 9 microtubule pairs surround 2 inside microtubules. 
Term
Basal body
Definition

Area below where the flagella protrdes from the cell, it's where the microtubules of the flagella originate. 

Term
Cilia
Definition
Hairlike structures that are used in cellular movement
Term

Primary walls

Definition

Walls in plant cell which are placed down where cell is still growing. 

Term
Middle lamella
Definition

Glue that holds cells together in animal cells. 

Term
Secondary walls
Definition
Walls inside the primary wall wall of plant cells. 
Term
Glycoproteins
Definition
Animal cells, proteins that form the ECM, give cell support + strength
Term
Extracellular matrix
Definition
Proteins outside the cell, collagen main component. 
Term
Fibronectin
Definition
ECM is attached to plasma membrane through fibronectin which are connected to glycoproteins. 
Term
Integrins
Definition
Fibronectins connect to integrins, allow ECM to alter gene expression and the behavior of the cell. 
Term

Three primary componetns of cell's cytoskeleton and how they affect cell shape, function, and movement. 

Definition
Actin Filaments:  Cellular movements such as contraction and pinching.
Intermediate Filaments:  For the cytoskeleton,durable. 
Micrrotubules:  Moves material within the cell itself. 
Term
Hydrocarbons
Definition
Molecules consisting only of carbon and hydrogen, they are fossil fuels, energy righ:  gasoline, and nonpolar. 
Term
Functional Groups
Definition
Groups that are polar, attached to hydrocarbons
Term

Macromolecules

Definition
Very large molecules made of polymers.  4 types 1) Nucleic acids, 2) Proteins 3) Lipids 4) carbs
Term
Polymers
Definition
Very long repeating units of monomers - trains
Term
Dehydration synthesis
Definition
How polymers are form, water is taken out
Term
Hydrolysis
Definition
How polymers are broken up into monomers - water is forced in
Term
Amino acid
Definition
Building block of proteins, 20 different amino acids make up a protein
Term
Peptide bond
Definition
A covalent bond that links two amino acids
Term
Polypeptides
Definition
A long chain of amino acids, more than one polypeptides form a protein. 
Term
Domain
Definition
A section of the protein made up of 100- 200 exon amino acids that have seperate functions
Term
Chaperon proteins
Definition
Helps a protein fold into the correct shape
Term
denaturation
Definition
The unfolding of a protein, caused by three things:  1)  High ph 2) high temp 3) high ionic concentration
Term
dissociation
Definition
Where the subunits of a protein come apart
Term
DNA:  Deoxyribnucleic acid
Definition
Encodes for RNA, stores the info in the cell.  Composed of a phosphate group connected to a 5 purine sugar connected to a base pair.   A-T, G-C
Term
RNa:  Ribonucleic acid
Definition
Encodes for proteins, transcription, single helix not double, A-U, G-C
Term
Nucleotides
Definition

single unit Phosphate group-5 carbon sugar- Nitrogenous base.  DNA basically. 

Term
Nucleic acid
Definition
Long polymers of nucleotides, the double helix chain,
Term
Double helix
Definition

structure of nucleic acid chain, linked base pairs. 

Term
Complementary
Definition

Base pairs are complementary
DNa:  A-T, G-C
RNA:  A-U, G-c

Term
Phospholipds
Definition
Main component of cell membrane, composed of Choline - Phosphate group - Glycerol - 2 fatty acid tails.  Head is philic, tails are phobic. 
Term
Fats
Definition

Long term energy storage.  A glycerol
                                           l  l  l

                                         3 Fattay acids

Term
Triglyceride / triacylglycerol
Definition

A fat molecule, a glycerol linked to three fatty acids

Term
Saturated fats
Definition
All bonds are taken up by hydrogen.  Solid at room temp. 
Term
Unsaturated fats
Definition
Double bonds between carbon-hydrogen.  Liquid at room temp, more energy, oils
Term
Polyunsaturated
Definition
Fatty acids with more than one double bond, liquid at room temp. 
Term
Carbohydrates
Definition

IE Sugars, energy storage in animal cells.  formula goes Carbon: hydrogen: oxygen  1:2:1

Term
Monosaccarides
Definition

most basic sugar, 3 carbon sugars. 

Term
Disaccarides
Definition
Two monosaccarides linked together. 
Term
Polysaccarides
Definition

multiple monosaccarides linked together: starch ceullulose

Term
Isomers
Definition
Same empirical formula, different structure.  Glucose for example --> fructose, galactose. 
Term
Starches
Definition

Plant polysaccarides formed of glucose, energy storage, unbranched

Term

Glycogen

Definition
Animal form of starch.  polysaccaride of glucose.  branched. 
Term
Alpha form
Definition
Starch / glycogen:  alpha subunits, repeating. 
Term
Beta form
Definition
Plant cellulose:  alpha-beta-alpha, forms the cell walls, indigestible. 
Term
Chitin
Definition
Alpha beta alpha glucose sequence with N2 added.  protects arthropods, indigestible. 
Term
Importance of amino acid R Group
Definition
Non aromatic AA:  Non polar, non reactive
Polar Uncharged AA:  Reactive
Aromatic:  Hydrophobic
Ionizable:  Can have charge, more reactive
Term
Receptor proteins
Definition
Proteins with a specific shape that fits the shape of a specific signal molecule, triggering a response in the cell.
Term
Neurotransmitters
Definition
Rapid communication through nerve cells. 
Term
Intracellular receptors
Definition
Small, lipid, non polar molecules that can go through the plasma membrane and bind with intracellular receptors, triggering a reaction in the cell. 
Term
Cell surface receptors
Definition
Proteins bound on the plasma membrane that recieve extracellular signals and make an intracellular response. 
Term
cell surface receptors
Definition

Polar signals bind to proteins on surface and cause an intracellular response. 

Term
Ion channel
Definition

A chain of amino acids that threads back and forth through the membrane and forms a pore through which ions can flow through. 

Term
Protein kinases
Definition
Enzymes that add phosphate groups to proteins. 
Term
G protein
Definition
A recptor bound protein bound to another protein that activates another ion channel or enzyme. 
Term
Second messangers
Definition
Alter the behavior of the proteins by binding to them and changing their shape
Term
Cyclic amp cAMP
Definition
One of the most used 2nd messasngers. 
Term
Adenylyl clyclase
Definition
Once activated this enzyme produces a lot of cAMP through ATP
Term
Tissues cell junctions
Definition
Long lasting or permanent connections between cells. 
Term
Desmosenes
Definition
Anchoring junctions that connect the cytoskeletons of adjacent cells.
Term
Cadherins
Definition
proteins that create the link in desmosenes
Term
Adherens junctions
Definition

Anchoring junctions that connect the filaments of cell with those of neighboring cells.

Term
communicating junctions
Definition
How cells communicate with adjacent cells, they link cytoplasms together allowing ions / molecules to pass through plasma membrane
Term
gap junctions
Definition
CJs in animal cells, formed by connexons
Term
Plasmedesmata
Definition
CJs in plants, links ERs of 2 cells together.
Term
Diffusion
Definition
Molecules moving from a high to low concentration to seek equilibrium.
Term
Ion channels
Definition
Proteins that allow ions across the membrane. 
Term

Facilitated diffusion

Definition
Where substances move with concentration gradient with help of the carriers. 
Term
Aquaporins
Definition
specialized channels for water.
Term
Osmosis
Definition
the movement of water towards a higher solute concentration. 
Term
hydrostatic pressure
Definition
the pressure of the cytoplasm pushing against the plasma membrane. 
Term
active transport
Definition
Tranport of molecule across membranes against their concentration gradient using ATP. 
Term
sodium potassium pump
Definition
Pumps Na+ out and K+ In using Atp
Term
countertransport
Definition
where both Na+ and another molecule bind to the same transport proteine and move in opposite directions. 
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