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Molecular Methods for Detection of Specific Organisms
Exam 4
18
Microbiology
Undergraduate 4
10/11/2011

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Term
What are the advantages of molecular methods for detection of specific microorganisms?
Definition
  1. Detect fastidious organisms 
  2. Detect organisms that don't survive transport
  3. Much faster
  4. More sensitive and specific
  5. Can detect minute strain differences
  6. Less tech time
Term
What types of organisms can molcular methods be used to identify?
Definition
  1. Bacteria
  2. Viruses
  3. Parasites
  4. Fungi
  5. Yeasts
Term
What types of nucleic acids does molecular methods identify?
Definition
DNA or RNA
Term
What are the 3 methods of molecular detection?
Definition
  1. Hybridization of nucleic acid segments
  2. Nucleic acid amplification
  3. Signal amplification
Term
What is the principle of hybridization of nucleic acid segments?
Definition

based on ability of 2 complementary strands of nucleic acids to form hydrogen bonds to form a double helix

known strand = probe

unknown strand = target

Term
What are 3 ways that hybridization of nucleic acid segments is detected?
Definition
  1. Radioactively labeled isotope
  2. Enzymatic
  3. Chemiluminescent (most sensitive)
Term
What are the 3 types of amplification as relating to molecular testing?
Definition
  1. The target
  2. The probe
  3. The probe signal
Term
What are the 3 specific types of molecular tests?
Definition
  1. PCR
  2. Nucleic acid probe
  3. Signal amplification
Term
What type of molecular test is PCR?
Definition
Amplification (target NA is amplified)
Term
What is another name for the nucleic acid probe molecular test?
Definition
Ligase Chain Reaction
Term
What is amplified in the nucleic acid probe molecular test?
Definition
Probe, not target
Term
What is the principle of signal amplification as related to molecular testing?
Definition
Increases the number of reporter molecules (can increase signal strength thousands of times)
Term
How is strain typing and identification done?
Definition
  • Different strain's DNA are digested with a restriction enzyme and the fragments are compared.
  • Fragments called restriction fragment legnth polymorphisms (RFLP) patterns
Term
What does the GenProbe Aptima Combo 2 Assay test for?
Definition
  1. Neisseria gonorrhoeae
  2. Chlamydia trachomatis
Term
What kind of molecular test is the GenProbe Aptima Combo 2 Assay and what is the target?
Definition
  1. PCR test, amplification
  2. target is rRNA
Term
What is the principle of Clostridium difficile toxin B Cepheid Xpert?
Definition
Detects presence of specific gene sequences which code for toxin B.
Term
What is the principle behind the Shiga Toxin ST-1 and ST-2 by Immunocard Stat!EHEC test?
Definition
Immunochromatographic test utilizing monoclonal antibodies labeled with red-colored gold particles
Term
True or False.  The Siga Toxin ST-1 and ST-2 by Immunocard Stat!EHEC test is a molecular test.
Definition
False.  Uses antibodies.
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