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Molecular Cell Biology 420 - Final exam study cards
WSU final.
73
Biology
Undergraduate 3
05/06/2010

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Term
DNA tumor virus
Definition
ex: hpv, hepatitis b and c viruses. SV40 and polyomavirus. Papillomavirus, adenoviruses, herpesvirus, retrovirus (HIV)
Term
Hormone Receptors
Definition
2 types (intercellular- nuclear or membrane). receptor protein that binds to a specific hormone, 2 types (intercellular- nuclear or membrane), membrane types are like cAMP, inositol triphosphate (IP3) and calcium camodulin system, while nuclear types are like zinc finger proteins, glucocorticoids, estrogens, androgens
Term
Intercellular/nuclear hormone receptor
Definition
Binds to nucleus. Examples zinc finger proteins, glucocorticoids, estrogens, androgens
Term
Membrane Hormone receptors
Definition
Bind to membrane of cell, don't act directly on nucleus, but send signal. Ex.cAMP, inositol triphosphate (IP3) and calcium camodulin system
Term
Aspirin
Definition
drug that acts on the cox, inhibits conversion of arachadonic acid into protoglandin “cyclo oxygenase’ 2 types.
drug that acts on the cyclooxygenase pathway, inhibits conversion of arachidonic acid into prostaglandins. COX-1 carries out normal, physiological production of prostaglandins, and COX-2, which is induced by cytokines, mitogens and endotoxins in inflammatory cells, and which is responsible for the production of prostaglandins in inflammation.
Term
Prostaglandin
Definition
is any member of a group of lipid compounds that are derived enzymatically from fatty acids and have important functions in the animal body. Every prostaglandin contains 20 carbon atoms, including a 5-carbon ring. They are mediators and have a variety of strong physiological effects, such as regulating the contraction and relaxation of smooth muscle tissue.[1] Although they are technically hormones, they are rarely classified as such.
Term
COX-1
Definition
carries out normal, physiological production of prostaglandins
Term
COX-2
Definition
is induced by cytokines, mitogens and endotoxins in inflammatory cells, and which is responsible for the production of prostaglandins in inflammation
Term
COX
Definition
cyclo oxygenase’
Term
Trimeric G protein
Definition
3 subunits: alpha, beta, gamma / during activation (by 2 things: receptor bind to it to cause a conformational change and then the affinity changes and attracts GTP) they separate / alpha activates the cyclase (2 forms: alpha I and alpha S).
Term
IP3
Definition
is a second messenger which mobilized Ca++ and regulate cell proliferation ‘inositol trisphosphate’ comes from the PI ‘phosphinosital’ pathway: you get pip, and pip2; you hyprolize pip2 to get Diasal glycerol and IP3; IP3 signals a calcium release from the endoplasmic reticulum (3rd messenger)
Term
Skeletal muscle contraction
Definition
Actin and Myosin (myosin heads move over the actin) slide over one another to shorten the sarcomeres. Nerve impulses signals the release of calcium to bind to troponinC which then modulates tropomyosin to move uncovering a site which myosin will then bind to actin. This then pulls Z bands towards each other shortening the sarcomere. ATP binds myosin releasing actin and the myosin is then cocked back. Energy dependent, energy comes from ATP hydrolysis.
Term
Smooth muscle contraction
Definition
calcium from intra or extracellular source. Major difference is that smooth muscle is not well organized into sarcomeres; the myosin light chain phosphorylates enabling contraction causes a conformational change
Term
Dynamic Instability
Definition
Applies to microtubules; implies that they are shortening and lengthening unlike filaments. GTP binding and monomers are tubulin (protein, at least 2: alpha and beta) Applies to microtubules; implies that they are shortening and lengthening unlike filaments. GTP binding and monomers are tubule (protein, at least 2: alpha and beta)
Term
Filament Structure
Definition
in terms of structure all filaments are formed of subunits bound by monomer, dimer, etc. requires energy not random association. Proteins that facilitate are…
Term
Adenyl Cyclase Actvity
Definition
An enzyme located in the membrane; connected with Cyclic AMP pathway. Activated by subunit alpha of the G protein. Activation of this pathway is done by the binding of the ligen hormone to receptor and conformational change that triggers G protein to be activated and then cAMP that activates adenylyl cyclase which turns ATP --> cAMP
Term
3H-Thymidine Incorporation
Definition
Incorporates into DNA during the S phase
Term
Cell Division
Definition
also called cytokinesis;
Term
Mitotic Index
Definition
When a cell is big enough to divide during the M phase; you looked for the condensed chromosomes. A fraction of the total cells exhibiting this feature is the mitotic index. Example: a brain will have like 0 and sm. Intestine will be high number. Is a ratio of cells in mitosis to total number of cells.
Term
Actin Sequestering Protein
Definition
A few ex: tropomyosin, the troponins: G actinin, alpha actinin, gelosins 2/3 complex, prevents the formation of actin filaments filamin, fimbrin, thyosin, spectrin, dystrophin. ADF/cofilin/gelsolin/thymosin prevents the formation of actin filaments
Term
Tumor Suppressor Gene
Definition
these genes act as brakes that slow down cell cycle progression. ex: P53 and RB (retinablastoma) / term means that these proteins act during a normal cell cycle; in cancer these are knocked out or mutated or not express thus the cell divides from G1 to S even when there is DNA damage.
Term
cAMP dependant enzyme
Definition
Cyclic AMP activates 2nd messengers (protein A kinases) / study this path!!! Kinases phosphorylate various things downstream / A kinases have 4 subunits: (2 types: regulatory and catalytic) Cyclic AMP has to dissociate the regulatory subunits from catalytic subunits. The free catalytic subunits are then enzymatically active and able to phosphorylate serine residues on their target protein
Term
Protein controlling cilia beat
Definition
Composed of microtubules; organized in a 9+2 way. The outer microtubles are doublets(A + B fused together; another unit (dianin protein) gets energy and moves one over the other). Contractile elements, microtubules, outer are doublets, protein dynine moves it. gets energy and moves one over the other)
Term
Aa (amino acid) targets for kinase
Definition
3 types: tyrosine, serine, and therinine
Term
Ca++ binding muscle protein
Definition
What binds Ca for muscle movement? calmodulin
Term
Tyrosine Kinase domains
Definition
Receptors: insulin, growth hormone, / what’s different in this pathway is (of the three pathways I need to study) G protein coupling is missing because receptor is part of the enzyme. You are going to find a ligand binding site, a domain outside of the membrane and one on the inside. Going to get a conformational change that results in a phosphoralated tyrosine on the receptor which links it to downstream receptors. (signal transduction pathway)
Receptors that are tyrosine kinase – insulin, etc. What’s missing? Answer: It does not have G-proteins because it is the enzyme.
Term
Precursor of PG
Definition
arachidonic acid
Term
Protein Kinase A
Definition
think similar to cAMP dependent enzyme
Term
Cell Cycle Stages
Definition
G1 --> S --> G2--> M
Term
G1 or Gap 1
Definition
diploid, interval gap between mitosis and initiation of DNA replication. Cell is metabolically active and grows, but does not replicate DNA
Term
S phase or synthesis phase
Definition
DNA replication takes place
Term
G2 phase
Definition
Cell growth continues and proteins are synthesized in preparation for mitosis.
Term
M phase or mitosis
Definition
separation of daughter chromosomes and ending in cytokinesis
Term
cytokinesis
Definition
cell division
Term
Checkpoints in cell cycle
Definition
@ end of G1 - Start
@ end of G2 - mitotic checkpoint
Term
Go phase
Definition
cell remains metabolically active but no longer proliferate unless called on to do so by appropriate extracellular signals.
Term
Types of Signaling
Definition
3 types: endocrine, paracrine, autocrine
Term
endocrine
Definition
hormone secreted into bloodstream that regulates other cell far away
Term
paracrine
Definition
activates neighbor target cell nearby
Term
autocrine
Definition
hormone or chemical messenger that’s acts on self, or the same cell which released the messenger
Term
Phopolipase C products
Definition
1st enzyme that cleaves phospholipids before phosphate group in the PI (phosphoinositide) pathway; products are IP3 and DAG (diacyl glycerol)
Term
Drug blocks microtubule assembly
Definition
Vinblastine, Colchicine, podophyllotoxin, etc. taxol (anti-cancer drug, stabilizes microtubules), colchicines (binds tubulin and blocks polymerization), vinblastine (depolymerization and formation of vinblastine-tubulin paracrystal), nocodazole (depolymerization of microtubules)
Term
Cause of Cancer
Definition
DNA damage (through radiation) or uncontrolled cell proliferation
Term
Hormone Dependent Breast Cancer
Definition
tests is estrogen and progesterone receptors are both present; treat by blocking hormone from binding by using drugs like anti-estrogen such as amoxiphin. Competes for receptor; most effective are a combination of anti-estrogen and chromotase? or aromatase? inhibitors
Term
Tumor Markers
Definition
Ex: CA 125 (ovarian), CA 72-4- (ovarian), PSA (Prostate Specific Antigen), AFP alpha-feta protein. Estrogen(breast and endometrial), Progesterone receptor (breast), hCG [human chorionice gonadotropin ( testes: trophoblastic)], Her-2/neu (breast)
Term
Nuclear Receptor Type
Definition
Ex: zinc fingers, estrogen and progesterone, thyroid hormone, androgen, glucocorticode, (all hormones that act on the nucleus bind here)(all nuclear receptors are gene regulatory proteins which are transcription factors)
Term
Protein Kinase C
Definition
Diacylglycerol regulates this which phosphorilates proteins and does things like regulate cell growth and division. Signal transduction pathway.
Term
2nd Messengers
Definition
Ex; cyclic AMP, IP3, calcium, Diacyl glycerol.
Term
Microtuble functions
Definition
used for cell division in spindles, used for the movement of organelles, movement of cilia and flagella, structure, intracellular transport, trafficking of nutrients in cell, etc.
Term
Actin Binding Proteins –
Definition
are proteins that bind to actin. This may mean ability to bind actin monomers, or polymers, or both. α-actinin, β-spectrin, dystrophin, utrophin and fimbrin
Term
Genus Homo
Definition
humans, characteristics, increased autoimmune system, increased language skills, intellectual ability, larger brain, opposable thumb for fine motor skills. How we are distinguished?
Term
Oat Cell carcinoma
Definition
A lung cancer, unique because it’s got ACTH like peptides which acts on the adrenal gland; over stimulation give you hyperactive adrenal secretions like Cushing’s disease; treatment would require removal of tumor from lungs.
Term
Receptor controls transcription –
Definition
Term
Growth Factors
Definition
Stimulate growth of the cell; act during G1 phase of cell cycle; difference between GF and mitogen is that GF does not stiumate cell division while mitogen does both (some GF are mitogenic and some are not)
Term
Human Evolution
Definition
Came from a primitive form of Homo that no longer exists. We branched off around 2 million years ago. Homo sapiens have been around 200,000 years max/DNA evidence suggests. The definitive proof is maternal DNA and paternal DNA: they converged in Africa. Closest relative is 95-98% chimps but lifestyle not very close in terms of evolutionary connection
Term
Stem Cells
Definition
adult, embryonic: all organs have stems cells in them; main difference between types is differentiation capabilities. Ex; bone can make blood pretty easy but not nerve. Totipotent: cells from 1-3 days embryo, each cell can develop into new individual.
Pluripotent: from embryonic cells at 16 days (blastocyst/intercell mass) are most differentiationable, form any type of cell.
Multi potent: Cells are differentiated, but can form a number of other tissues. Fetal tissue, cord blood, adult stem cells.
Term
Mitogen
Definition
will cause cell growth and division
Term
Tumor Progression
Definition
Why? Main concept is that changes in DNA show an accumulation of mutations in genes that regulate cell cycles such as onco genes and suppressor genes. Growth factors and angiogenesis.
Term
Proto-oncogenes
Definition
Ex: RAF, RAS, ABLE, Cmyc, Gli, june, phos/ when these are changed or over- expressed, they become onco genes (viruses carry many onco genes)
Term
Ames Test
Definition
test carcinogens for the ability to mutate
Term
Initiator/Promoter
Definition
The initiator causes a mutation and then the promoter makes is grow. Damage to growth Initiator must be before promoter, and promoter must be in the right concentration
Term
Myosin Thick Filament
Definition
composed of myosin
Term
Cytoskeletal Fiber Length
Definition
if an actin or microtubule maintains the same length it’s called tread milling. The dissociation = to association
Term
G-actin pathway
Definition
G-actin --> Dimer --> Trimer --> F actin has pointed end (-) and barbed end (+). (+) end elongates faster than (-) end.
Term
Pointed end
Definition
(-) negative, slower
Term
Barbed end
Definition
(+), elongates faster than pointed end.
Term
DMBA
Definition
The initiator/ carcinogen. Dimethylbenz anthracene. Can be painted on mice and gives them skin cancer, found in tar. Dose dependent: the more exposure, time length, to DMBA gives you more cancer so is also a promoter. Cyclic hydrocarbons.
Term
MPF
Definition
(mitosis or maturation) promoting factor in OOcytes. Sends cell from G2 to M
Term
Receptor Properties
Definition
3 physical properties: have binding sites that have properties such as limited capacity and high affinity 10^9 kd ka (most are in the 10^4 – 10^6)/ also a lock and key ‘specificity’. The bind capacity is limited. Saturable
Term
Limited capacity
Definition
allows a certain number of bindning to receptor
Term
high Affinity
Definition
a liking for the receptor 10^9
Term
Specificity
Definition
lock and key.
Term
Kinase
Definition
enzyme that transfers phosphates from high energy donor molecules such as ATP in a process known as phosphorylation
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