Term
ATP-binding cassette (ABC) transporter proteins |
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Definition
Large superfamily of membrane transport proteins that use the energy of hydrolysis of ATP to transfer peptides and a variety of small molecules across membranes |
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Term
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Definition
Chemical group with R-C(=O)CH3. Important in metabolism and are added to some proteins as a posttranslational modification |
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Term
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Definition
Small water-soluble molecule that carries acetyl groups in cells. Consists of an acetyl linked to coenzyme A by an easily hydrolyzable thioester bond |
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Term
(nicotinic) acetylcholine receptor |
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Definition
Transmitter-gated ion channel that opens in response to binding of acetylcholine, converting a chemical signal to an electrical one. |
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Term
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Definition
Neurotransmitter that functions with a special class of chemical synapses; the neurotransmitter of vertebrate neuromuscular junctions. |
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Term
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Definition
Group of diverse lysosomal hydrolytic enzymes (e.g. proteases, nucleases) with optimal activity at acidic pH (~5.0) |
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Term
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Definition
Region at the head of a sperm that contains a sac of hydrolytic enzymes that digests the zona pellucida of an egg |
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Term
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Definition
Reaction that occurs when a sperm begins entry into an egg, releasing the contents of the acrosomal vesicle to help the sperm penetrate the zona pellucida |
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Term
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Definition
Rapid, transient, self propagating electrical excitation in the PM of a cell; makes long distance nervous system signaling possible. |
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Term
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Definition
General term for a small diffusible coenzyme that stores easily-exchangeable energy in the form of energy-rich covalent bonds, e.g. ATP, NADPH |
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Term
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Definition
Functional group derived from a carboxylic acid R-C(=O)OH group |
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Term
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Definition
Protein that binds clathrin to the plasma membrane cytoplasmic surface |
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Term
adenomatous polyposis coli (APC)
(protein) |
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Definition
Tumor suppressor that forms part of a complex (along with GSK3 and Axin) that recruits free cytoplasmic β-catenin and degrades it |
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Term
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Definition
Cell junction that attaches actin filaments to the plasma membrane, e.g. adhesion belts linking adjacent epithelial cells and focal contacts on the bottom of cultured fibroblasts |
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Term
adhesion belt (zonula adherens) |
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Definition
Beltlike adherens junction that encircles the apical end of an epithelia cell and attaches it to adjacent cells. |
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Term
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Definition
Catecholamine hormone released by chromaffin cells in the adrenal gland or by some neurons in response to stress. Elicits responses such as increased heart rate and blood sugar |
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Term
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Definition
The organizer for gastrulation in vertebrates |
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Term
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Definition
Purification of a protein mixture by passing it over a matrix with ligands for specific protein(s) attached so the matrix retains desired proteins |
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Term
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Definition
Measure of the strength of binding of the components in a complex
For the reaction A + B ↔ AB:
[AB]
Ka = -----------
[A][B] |
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Term
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Definition
Progressive increase in the affinity of antibodies for an antigen with the passage of time after immunization |
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Term
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Definition
Organic compound containing the group R-C(=O)H; Can be oxidized to an acid or reduced to an alcohol |
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Term
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Definition
Small but complex nitrogen-containing metabolite produced by plants as a defense against herbivores, e.g. caffeine, morphine, colchicine |
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Term
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Definition
General term for a group of covalently linked C and H atoms such as methyl and ethyl groups |
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Term
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Definition
One of a set of alternative forms of a gene, of which a diploid cell will have two occupying the same position on homologous chromosomes |
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Term
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Definition
The expression of only one Ig chain or TCR chain gene from either homologous loci present for that gene in a lymphocyte |
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Term
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Definition
Protein that changes conformation when it binds another molecule or is covalently modified
The change alters the activity of the protein and can form the basis of directed movement |
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Term
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Definition
Molecule containing a carbonyl group (-C=O) linked to a N |
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Term
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Definition
Chemical group containing nitrogen and hydrogen; becomes (+) charged in water |
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Term
aminoacyl-tRNA synthetase |
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Definition
Enzyme that attaches/"charges" a tRNA molecule to its correct amino acid via an ester bond |
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Term
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Definition
Weakly basic functional group derived from ammonia (NH3) in which at least one H is replaced by another atom. Can accept a proton and carry (+) charge in aqueous solution |
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Term
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Definition
Activated form of amino acid used in protein synthesis. Consists of a ester linkage of an amino acid's carboxyl to a tRNA's hydroxyl |
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Term
anaphase-promoting complex (APC) |
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Definition
Ubiquitin ligase that promotes the destruction of inhibitors of proteins that inhibits the degradation of cohesins that hold sister chromatids together |
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Term
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Definition
In yolky eggs, the yolk-free side that cleaves more rapidly than the other pole. |
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Term
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Definition
Protein mainly responsible for attaching the spectrin cytoskeleton to the erythrocyte plasma membrane via integral proteins. |
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Term
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Definition
Photosystem protein complexes bound to chlorophyll and other pigments and capture light energy and channel it to the photochemical reaction center. |
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Term
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Definition
Pathogenic microorganism ability to change antigens displayed on the cell surface, enabling them to evade immune system attack |
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Term
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Definition
Cell that displays foreign antigens complexed with MHC molecules on its surface |
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Term
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Definition
Carrier protein that transports two different ions or small molecules across a membrane in opposite directions, either simultaneously or in sequence |
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Term
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Definition
RNA complementary to a specific mRNA that can hybridize to the targeted mRNA and inhibit its function |
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Term
ADP-ribosylation factor (ARF) |
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Definition
Monomeric GTPase responsible for regulating both COPI and clathrin coat assembly at Golgi membranes |
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Term
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Definition
Star-shaped system of microtubules emanating from a centrosome or from a mitotic spindle pole |
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Term
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Definition
Reaction catalyzed by one of its products, creating a positive feedback on its reaction rate |
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Term
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Definition
Total binding strength of a polyvalent antibody with a polyvalent antigen |
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Term
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Definition
Bundle of microtubles and associated proteins that forms the core of a cilium or flagellum responsible for movement of an eukaryotic cell |
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Term
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Definition
Pigmented plasma membrane protein of a halophile bacterium that pumps protons out in response to light |
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Term
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Definition
Short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium or flagellum which serves as a nucleation site for the axoneme's growth. Similar in structure to a centriole |
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Term
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Definition
Multifunctional cytoplasmic protein involved in cell-cell adhesion by linking cadherins to the actin cytoskeleton. Can also act independently as a gene regulatory protein in the Wnt signaling pathway |
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Term
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Definition
Low-mol. weight compound used as a coenzyme for transferring carbon dioxide groups. Useful technically as a covalent label for proteins, allowing them to be detected by strong binding to avidin |
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Term
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Definition
A duplicated chromosome paired with its homologous duplicated chromosome at the beginning of meiosis |
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Term
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Definition
Artificial planar lipid bilayer membrane |
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Term
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Definition
A cell formed by the cleavage of a fertilized egg |
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Term
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Definition
Early stage of an animal embryo consisting of a hollow ball of cells before gastrulation |
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Term
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Definition
Normal light microscope that obtains images by simple transmission of light through the viewed object |
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Term
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Definition
Dense covering of microvilli on the apical surface of epithelia in the intestine and kidney that aids absorption by increasing cell surface area |
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Term
Ca2+-dependent protein kinase (CaM kinase) |
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Definition
Protein kinase regulated by the binding of activated calmodulin; indirectly mediates the effects of Ca2+ by phosphorylating other proteins |
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Term
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Definition
Family of proteins that mediates Ca2+-dependent cell-cell adhesion in animal tissues |
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Term
Ca2+ ATPase (calcium pump) |
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Definition
Transport protein of the sarcoplasmic reticulum that pumps Ca2+ out of the cytoplasm into the sarcoplasm using ATP |
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Term
Calvin/carbon-fixation cycle |
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Definition
Major metabolic pathway that incorporates CO2 into carbohydrates during the second stage of photosynthesis in plants |
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Term
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Definition
Multifunctional calmodulin-dependent protein kinase found in all animals that autophosphorylates upon activation. Especially abundant in the brain and thought to have roles in learning and memory in vertebrates. |
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Term
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Definition
Effect of the female reproductive tract that elicits a change in membrane composition of the acrosomal sperm head that results in an influx of Ca2+ and increased cAMP to hyperactivate sperm motility |
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Term
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Definition
Carbon atom with the configuration -(C=O)-OH. Molecules containing this group are weak acids |
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Term
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Definition
Cancer of epithelial cells; most common form of human cancer |
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Term
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Definition
Membrane transport protein that binds to a solute and transports it across the membrane by undergoing a series of conformational changes |
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Term
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Definition
Connective tissue composed of chondrocytes embedded in a matrix rich with type II collagen and chondroitin sulfate |
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Term
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Definition
Invaginations at the cell surface that bud off internally to form pinocytotic vesicles. Thought to form from lipid rafts. |
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Term
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Definition
Protein on T cells that binds to the costimulatory B7 protein on "pro" antigen-presenting cells, providing secondary signals required for naïve T cell activation |
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Term
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Definition
Coreceptor found on T cells that bind to the outside of class II MHCs |
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Term
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Definition
Coreceptor found on cytotoxic T cells that bind to the outside of class I MHCs |
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Term
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Definition
Protein that binds to and inhibits cyclin-Cdk complexes; primarily involved in G1 and S phases |
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Term
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Definition
Specialized layer of cytoplasm on the inner face of the plasma membrane. In animal cells it is an actin-rich layer responsible for cell surface movements. |
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Term
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Definition
Flattened membrane-enclosed structure that forms by fusion of cytoplasmic vesicles of a dividing plant cell to form the precursor of a new cell wall |
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Term
cell-mediated immune response |
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Definition
Adaptive immune response in which antigen-specific T cells are activated to do tasks such as killing infected cells and activating macrophages |
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Term
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Definition
The formation of cells around each nucleus in a multinucleate cytoplasm, transforming it into a multicellular structure |
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Term
central (primary) lymphoid organ |
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Definition
Organ in which lymphocytes develop; in adult mammals: the thymus and bone marrow |
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Term
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Definition
Short cylindrical array of microtubules usually found at the center of a centrosome in animal cells |
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Term
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Definition
Duplication of the centrosome (during interphase) and separation of the two new centrosomes at prophase to form the poles of the mitotic spindle |
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Term
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Definition
Region of DNA with greater than average density of CG sequences; usually remain unmethylated |
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Term
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Definition
Membrane transport protein that forms an aqueous pore through which specific solutes (e.g. ions) can pass |
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Term
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Definition
Mechanism of using a gradient of protons across a membrane to drive an energy-requiring process such as ATP synthesis and bacterial flagella rotation |
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Term
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Definition
X-shaped connection visible between paired homologous chromosomes in meiosis I and represents a site of crossing over |
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Term
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Definition
Cell that stores adrenaline in vesicles and secretes it in response to stress signals from the nervous system |
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Term
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Definition
Hairlike extension of a eukaryotic cell containing a core bundle of microtubules and capable of performing repeated beating movements. Found in large numbers on the surface of may cells, and are responsible for the swimming of many single-celled organisms. |
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Term
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Definition
Face where material enters a Golgi stack. |
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Term
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Definition
Network of interconnected cisternae and tubules which receives vesicles from the ER and transfers material to the cis face of the Golgi apparatus |
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Term
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Definition
Flattened membrane-bounded compartment as found in the ER or Golgi |
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Term
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Definition
Aerobic metabolic pathway that oxidizes acetyl groups from food into CO2 and H2O; occurs in the mitochondria |
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Term
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Definition
Molecule present on almost all cell types and presents viral peptides on the surface of infected cells, where they are recognized by cytotoxic T cells |
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Term
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Definition
Molecule present on professional antigen presenting cells and presents foreign peptides to helper T cells |
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Term
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Definition
Region of the plasma membrane coated with protein that continually form and bud off by endocytosis to form intracellular vesicles |
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Term
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Definition
Small molecule tightly associated with an enzyme that participates in catalysis, often by binding covalently to the substrate, e.g. biotin, NAD+, CoA |
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Term
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Definition
Small molecule used in the enzymatic transfer of acyl groups in the cell |
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Term
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Definition
Inorganic ion or coenzyme required for enzymatic activity |
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Term
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Definition
Complex of proteins that hold sister chromatids together along their length before separation triggered by separin |
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Term
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Definition
Fibrous protein rich in Gly and Pro; major component of the ECM and connective tissues. Exists in many forms: type I, the most common, in skin/tendon/bone, type II in cartilage, type IV in basal laminae |
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Term
colony-stimulating factor (CSF) |
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Definition
General name for molecules that control hematopoietic differentiation |
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Term
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Definition
Describes the control of a cellular process step (e.g. initiation of transcription) by a combination of proteins rather than an individual one |
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Term
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Definition
Embryo regions formed exclusively from the descendants of a few founder cells; no movement between these regions can occur once they are delimited |
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Term
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Definition
System of serum proteins activated by antibody-antigen complexes or by microorganisms; eliminates pathogens by directly lysing them or promoting their phagocytosis |
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Term
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Definition
Chain of sugars attached to a glycoprotein; generated by trimming the original oligosaccharide from the ER and adding sugars |
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Term
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Definition
Protein complex involved in chromosome condensation prior to mitosis; target of the M-Cdk |
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Term
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Definition
Mutation that changes a protein or RNA so its function is altered only in some conditions, e.g. extreme temperatures |
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Term
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Definition
Light microscope that produces a clear image of a plane within a solid object using a laser as a pinpoint light source and scans across the plane to produce a 2D "optical section" |
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Term
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Definition
Water-filled pore in a cell's PM formed by a protein hexamer; part of a gap junction that forms a continuous channel between two cells |
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Term
constitutive secretory pathway (default pathway) |
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Definition
Pathway present in all cells by which molecules are continually delivered to the PM from the Golgi in vesicles that fuse with the PM |
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Term
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Definition
Cellular tissue rearrangement that causes it to extend in one dimension and shrink in another (e.g. skinnier but longer) |
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Term
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Definition
Phenomenon of when binding of one ligand to a target promotes the binding of successive ligands; seen in the assembly of large complexes and enzymes or receptors composed of multiple allosteric subunits |
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Term
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Definition
Describes import of a protein into the ER before the polypeptide is completely synthesized |
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Term
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Definition
One of the folds of the inner mitochondrial membrane |
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Term
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Definition
Concentration at which a monomer is in equilibrium with the assembled form of a protein (e.g. G-actin<=>F-actin) |
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Term
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Definition
Riboflavin-containing protein responsive to blue light and found in both animals and plants; involved in animal circadian rhythms |
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Term
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Definition
Main inhibitors of cyclic nucleotide monophosphates by hydrolyzing cyclic bonds |
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Term
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Definition
Soluble intracellular signaling molecule formed by guanylyl cyclase in response to retinal photoreceptor stimulation |
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Term
coenzyme Q:cytochrome c-oxidoreductase
(cytochrome bc1 complex) |
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Definition
Second of three electron-driven proton pumps in the oxidative phosphorylation chain; accepts electrons from ubiquinone (CoQ10) |
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Term
cytochrome oxidase complex |
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Definition
Third of three electron-driven proton pumps in oxidative phosphorylation; accepts electrons from cytochrome c uses oxygen as an electron acceptor to generate water |
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Term
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Definition
Colored, heme-containing protein that transfers electrons during cellular respiration and photosynthesis |
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Term
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Definition
Automatic delivery of material from the Golgi to the plasma membrane if no sorting signals are present |
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Term
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Definition
Describes multiple states with the same result: e.g. multiple codons for the same amino acid |
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Term
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Definition
Cell derived from bone marrow and specialized for uptake of particulate material by phagocytosis and acts as a professional antigen-presenting cell |
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Term
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Definition
Type of anchoring cell-cell junction formed between two epithelial cells; characterized by dense protein plaques with inserted intermediate filaments |
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Term
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Definition
Fourth stage of meiosis I in which chiasmata are seen |
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Term
DNA affinity chromatography |
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Definition
Technique for purifying sequence-specific DNA-binding proteins by trapping them in a matrix covalently linked to DNA fragments |
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Term
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Definition
Technique for determining the sequence to which a DNA-binding protein binds, as well as the binding affinity |
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Term
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Definition
Enzyme involved in opening the DNA double helix into single strands for DNA replication |
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Term
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Definition
Enzyme which synthesizes a short strand of RNA on a DNA template, producing a primer for DNA synthesis |
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Term
dominant negative mutation |
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Definition
Mutation with a dominant phenotype elicited by interference of the function of normal gene products by the mutant products |
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Term
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Definition
Property of sudden conversion from growth↔shrinkage in a protein filament, e.g. microtubules or F-actin |
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Term
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Definition
Cytosolic GTPase that binds to the neck of clathrin-coated vesicles in the budding process and completes vesicle formation |
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Term
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Definition
A family of large motor proteins that use ATP to move along microtubules. In cilia, this protein forms the side arms in the axoneme that cause microtubule doublet sliding |
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Term
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Definition
Disordered cell growth and behavior in a tissue |
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Term
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Definition
Cell that carries out the final response/function of a process. e.g. activated lymphocytes in the immune system |
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Term
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Definition
Amorphous hydrophobic protein that forms extracellular extensible fibers that makes tissue resilient |
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Term
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Definition
Membrane-bounded organelle in animal cells that carries newly endocytosed materials and usually fuses with lysosomes for degradation |
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Term
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Definition
Flattened cell type that forms a sheet lining blood vessels |
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Term
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Definition
Regulatory DNA sequence to which proteins bind and influence the rate of transcription of a gene that can be thousands of base pairs away |
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Term
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Definition
Virus with a capsid surrounded by a lipid membrane derived from the host cell when the virus buds from the host |
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Term
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Definition
Protein that remains in the ER lumen or its membranes and functions there, as opposed to proteins that are in transit in the ER |
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Term
ER retention signal (KDEL) |
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Definition
Short amino acid sequence (Lys-Asp-Glu-Leu) that prevents a protein from moving out of the ER; found on ER resident proteins |
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Term
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Definition
Growth factor that stimulates the production of RBCs; produced by the kidney and acts on precursors in the bone marrow |
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Term
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Definition
Molecule formed by the condensation of a hydroxyl (-OH) with an acyl (-COOH), resulting in an R-(C=O)-O-R |
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Term
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Definition
Activated carrier molecule produced by the citric acid cycle that yields 1.5 or 2 ATP per molecule in oxidative phosphorylation |
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Term
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Definition
Membrane receptor that initiates apoptosis in the receptive cell after binding to its ligand |
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Term
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Definition
Family of receptors specific for the invariant constant region of immunoglobulins with the exception of IgM and IgD |
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Term
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Definition
Type of collagen molecule that assembles into rope-like structures, which include type I, II, III, V, and XI. |
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Term
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Definition
ECM protein involved in adhesion of cells to the matrix and guidance of migrating cells during embryogenesis. Integrins are receptors for this protein |
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Term
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Definition
Thin, spike-like protrusion with an actin filament core generated on the leading edge of a crawling animal cell |
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Term
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Definition
Dye that fluoresces green when illuminated with blue or UV light |
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Term
focal adhesion kinase (FAK) |
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Definition
Cytoplasmic tyrosine kinase present at cell-matrix focal adhesions in association with the cytoplasmic tails of integrins |
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Term
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Definition
Energy that can be extracted from a system to drive reactions; takes into account changes in both energy and entropy |
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Term
γ-tubulin ring complex (TuRC) |
|
Definition
Protein complex that mimics the (+) end of a microtubule and is an efficient nucleator of microtubules |
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Term
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Definition
Cluster of neurons and associated glia located outside the CNS |
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Term
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Definition
Glycolipid having one or more sialic acid residues in its structure. Found in the PM of eukaryotic cells and abundant in nerve cells. |
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Term
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Definition
Stage in animal embryogenesis during which an embryo is transformed from a blastula to a structure with a gut (gastrula) |
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Term
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Definition
Process by which the sequence of one DNA helix can be transferred and alter the sequence of another DNA helix. It occasionally occurs during recombination |
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Term
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Definition
Map of a chromosome in which relative distance between genes is determined by the amount of recombination that occurs between them |
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Term
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Definition
Parental influence on whether a gene is expressed in the embryo depending |
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Term
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Definition
Supporting cell of the nervous system, e.g. oligodendrocytes and astrocytes in the CNS and Schwann cells in the PNS. |
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Term
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Definition
Small reactive molecule (O=CHCH2CH2CH2CH=O) with two aldehyde groups often used as a cross-linking fixative |
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Term
|
Definition
Small three-carbon molecule with one hydroxyl per carbon and is the parent compound of many small molecules including phospholipids |
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Term
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Definition
Carbohydrate-rich layer that forms the outer coat of eukaryotic cells. Composed of oligosaccharides linked to intrinsic PM glycoproteins and glycolipids, as well as secreted glycoproteins/proteoglycans reabsorbed on the cell surface |
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Term
|
Definition
Long, linear, highly charged polysaccharide (e.g. chodroiton sulfate, hyaluronic acid, heparin) composed of a repeating pair of sugar, one of which is always an amino sugar. Mainly found covalently linked to a protein core in ECM proteoglycans. |
|
|
Term
glycosylphosphatidylinositol anchor (GPI anchor) |
|
Definition
Lipid linkage by which some membrane proteins are bound. Formed as the proteins travel through the ER |
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Term
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Definition
G protein class that activates phospholipase C-β and begins the inositol phospholipid signaling cascade |
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Term
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Definition
Stacked chlorophyll-containing thylakoid discs in chloroplasts that are the site of light-trapping reactions of photosynthesis |
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Term
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Definition
White blood cell distinguished by conspicuous cytoplasmic granules; includes neutrophils, basophils, and eosinophils |
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Term
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Definition
Band of pale pigmentation that appears in some amphibian species opposite the site of sperm entry; caused by rotation of the egg cortex and associated pigment granules; marks the future dorsal side |
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Term
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Definition
Nucleotide triphosphate with a special role in microtubule assembly, protein synthesis, and cell signaling. |
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Term
|
Definition
DNA-binding structural motif present in many gene regulatory proteins; should not be confused with helix-turn-helix |
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Term
|
Definition
Type of T cell that helps stimulate B cells to produce antibodies and activates macrophages to kill ingested microorganisms |
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Term
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Definition
Iron-containing cyclic organic molecule that carries O2 in hemoglobin and carries an electron in cytochromes |
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Term
|
Definition
Generation of blood cells mainly in the bone marrow |
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Term
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Definition
Cell with multiple genetically different nuclei; produced by the fusion of two or more different cells |
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Term
high-mannose oligosaccharide |
|
Definition
Chain of sugars generated by a trimming of original mannose-rich oligosaccharide that leaves most of the mannose residues with no subsequent addition of sugars |
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Term
histidine-kinase-associated receptor |
|
Definition
Transmembrane receptor found in bacteria, yeast, and plant cells; involved in sensing stimuli such as bacterial chemotaxis; associated with histidine protein kinase on its cytoplasmic side |
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Term
|
Definition
Type of small abundant Arg and Lys-rich proteins which form nucleosomes in eucaryotic chromosomes |
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|
Term
heterogenous nuclear ribonuclear protein (hnRNP) |
|
Definition
Proteins that assemble on newly synthesized RNA, compacting it and signals that the pre-mRNA is not fully processed and ready for export |
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Term
|
Definition
X-shaped structure observed In DNA recombination in which two molecules are held together at the site of crossing over; also called a cross-strand exchange |
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Term
|
Definition
Short 180bp conserved DNA sequence that encodes a DNA-binding protein motif found in genes that orchestrate development in a wide range of organisms |
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Term
|
Definition
DNA-binding domain that defines a class of gene regulatory proteins important in animal development |
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Term
|
Definition
Gene that determines which body part a region of a body develops |
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Term
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Definition
Tightly linked cluster of genes in animals that have a linear correspondence to the anterior-posterior segmentation of the body |
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Term
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Definition
H3O+, a water molecule associated with a proton |
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Term
inhibitor of apoptosis (IAP) family |
|
Definition
Family of proteins that are intracellular inhibitors of apoptosis |
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Term
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Definition
Group of cells set aside in Drosophila embryos that are determined to develop into an adult structure (e.g. eye, leg, wing) |
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Term
induction [developmental bio.] |
|
Definition
Change in the developmental fate of one tissue caused by interaction with another tissue |
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|
Term
inhibitory G protein (Gi) |
|
Definition
G protein that can regulate ion channels and inhibit adenylyl cyclase |
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|
Term
inhibitory neurotransmitter |
|
Definition
Type of neurotransmitter that opens transmitter-gated Cl- or K+ channels in the postsynaptic membrane of a nerve or muscle cell, inhibiting the generation of an action potential |
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Term
|
Definition
Protein that prmotes the proper association of ribosomes with mRNA and required for initiation of translation |
|
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Term
|
Definition
Special tRNA that initates translation. Always carries Met in eukaryotes, and fMet in some prokaryotes |
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Term
|
Definition
Immune response that involves pre-existing defenses of the body e.g. skin, mucosa, antimicrobial molecules, phagocytes. Non-specific toward pathogens |
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Term
|
Definition
Nuclear envelope membrane that contains binding sites for chromatin and the nuclear lamina |
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Term
inositol phospholipids (phosphoinositides) |
|
Definition
Family of lipids containing phosphorylated inositol derivatives. Although minor components of the PM, they are important in signal transduction in eucaryotes |
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Term
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Definition
DNA sequence that prevents a DNA-bound gene regulatory protein in the control region of a gene from influencing transcription of surrounding genes |
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Term
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Definition
Large family of transmembrane heterodimers involved in adhesion of cells to the ECM and other cells |
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Term
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Definition
Regeneration that fills in missing tissue when two mismatched parts of a structure are grafted together (e.g. an upper leg and foot regenerating the middle segment) |
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Term
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Definition
Cytokine secreted by TH1 cells to enhance cell-mediated immunity via anti-viral response and macrophage activation |
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Term
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Definition
Secreted protein that mainly mediates local interactions between leucocytes during inflammation/immune response |
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Term
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Definition
Small hydrophobic molecule that dissolves in lipid bilayers and increases their permeability to specific inorganic ions; can carry normally inpermeable molecules; can also disrupt ion concentration gradients |
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Term
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Definition
Electron-transporting groups consisting of 2 or 4 Fe atoms bound to an equal number of S atoms; found in a class of electron-transport proteins |
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Term
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Definition
Member of a large family of lipid molecules with a carbon skeleton based on multiple five carbon isoprene CH2=C(-CH3)-CH=CH2 units, e.g. retinal and dolichol |
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Term
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Definition
Rapid signaling pathway in which signals (e.g. interferon) activate gene expression, involves Janus kinases and signal transducers and activators of transcription |
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Term
|
Definition
Standard unit of energy equal to approximately .24 calories |
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Term
potassium (K+) leak channel |
|
Definition
K+ transporting ion channel that remains open even in a resting state |
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Term
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Definition
Organic molecule containing a carbonyl (C=O) bound to two carbon groups (R3C-CO-CR3) |
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Term
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Definition
Type of motor protein that uses ATP hydrolysis to move along a microtubule; transports intracellular cargo along microtubule tracks |
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Term
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Definition
Complex structure on mitotic chromosome centromeres which attaches to microtubules; plays an active part in movement of chromosomes to centrioles |
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Term
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Definition
Heterotrimeric ECM protein found in basal laminae, where it forms sheetlike networks |
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Term
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Definition
Paired chromosome in meiosis in immature amphibian eggs, in which chromatin forms large stiff loops extending out from the chromosome's central axis |
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Term
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Definition
Protein that binds tightly to specific sugars; frequently isolated from plant seeds and used to purify glycoproteins or detect them on cell coats |
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Term
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Definition
First phase of meiosis I in which paired duplicated homologous chromosomes condense and become visible in light microscopy |
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Term
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Definition
Structural motif in many DNA-binding proteins consisting of two α-helices from separate proteins joined together in a coiled-coil (i.e. zipper-like) |
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Term
leucine-rich repeat (LRR) protein |
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Definition
Common type of receptor Ser/Thr kinase in plants. Characterized by Leu-rich extracellular sequences. |
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Term
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Definition
Mutual effect of the binding of one ligand on the binding of another; central feature of the behavior of all allosteric proteins |
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Term
|
Definition
Enzyme that catalyzes cleavage of fatty acids from the glycerol moiety of a triglyceride |
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Term
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Definition
Plasma membrane subdomain enriched in sphingolipids and cholesterol |
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Term
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Definition
Secreted signal molecule that acts as a short range paracrine signal |
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Term
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Definition
Long-lasting increase in the sensitivity of certain synapses in the hippocampus; induced by a short burst of repetitive firing by presynaptic neurons |
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Term
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Definition
Large complex composed of a single protein molecule and many esterfied cholesterol molecules and other lipids. Form in which cholesterol is transported in the blood and absorbed by cells |
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Term
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Definition
Bacterial state in which it carries the DNA of an inactive virus in its genome. The virus can be activated to replicate and lyse the cell |
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Term
mannose-6-phosphate (M6P) |
|
Definition
Unique marker attached to oligosaccharides on some glycoproteins targeted toward lysosomes |
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Term
mitogen-activated protein kinase (MAP kinase) |
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Definition
Class of kinases that relays signals from the plasma membrane to the nucleus; turned on by a wide range of proliferation or differentiation-inducing signals |
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Term
mating-type locus (MAT locus) |
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Definition
Locus that determines the mating type (α or a) of a haploid budding yeast cell |
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Term
[mitochondrial] matrix space |
|
Definition
Central subcomparment of a mitochondrion, bounded by the inner mitochondrial membrane; corresponds to the stroma in a chloroplast |
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Term
Mini Chromosome Maintenance (MCM) complex |
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Definition
Protein complex that binds to origin recognition complexes in eucaryotic DNA in early G1 and are involved in forming the pre-replicative complex |
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Term
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Definition
Large myeloid cell with a multilobed nucleus; remains in the bone marrow when mature and generates platelets that bud off from long cytoplasmic processes |
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Term
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Definition
Organized group of dividing cells whose progeny give rise to the tissues and organs of a flowering plant, e.g. the tips of shoots and roots |
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Term
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Definition
Immature, unspecialized form of connective tissue in animals consisting of cells embedded in thin ECM |
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Term
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Definition
Replacement of a differentated type of cell with another differentiated type; usually caused by abnormal stimuli |
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Term
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Definition
Small vesicle originating from fragmented ER produced from cell homogenates |
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Term
microtubule-associated protein (MAP) |
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Definition
Any protein that binds to microtubules and modifies their properties, e.g. dynein |
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Term
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Definition
Thin cylindrical membrane-covered projection on the surface of an animal cell containing a core bundle of actin filaments; present in large numbers on absorptive surfaces of epithelial cells |
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Term
|
Definition
Structure formed at the end of cleavage that can persist for some time as a tether between two daughter cells in animals |
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Term
|
Definition
Comparatively slower-growing end of a microtubule or microfilament |
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Term
|
Definition
DNA repair process that corrects errors during DNA replication by removing a short stretch of newly synthesized DNA and replacing it with the correct sequence based on the template strand |
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Term
mitochondrial precursor protein |
|
Definition
Mitochondrial protein encoded by a nuclear gene, synthesized in the cytosol, and transported into mitochondria |
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Term
|
Definition
Type of white blood cell that leaves the bloodstream and matures into a macrophage in tissues |
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Term
|
Definition
An organism made from a mixture of cells of different genotypes |
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Term
|
Definition
Protein that uses energy derived from nucleotide triphosphate (NTP) hydrolysis to propel itself along a filament or another polymer |
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Term
|
Definition
Any white blood cell other than lymphocytes e.g. baso/eosino/neutrophils |
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Term
|
Definition
Type of unstriated muscle cell frequently found in glandular epithelia |
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Term
nicotine adenine dinucleotide (NAD+) |
|
Definition
Activated carrier that participates in an oxidation(?) reaction by accepting a hydride (H-) ion from a donor molecule; the product is an important carrier of electrons for oxidative phosphorylation |
|
|
Term
NADH dehydrogenase complex |
|
Definition
First of the three electron-driven proton pumps in the mitochondrial respiratory chain. It accepts electrons from NADH |
|
|
Term
nicotine adenine dinucleotide phosphte (NADP+) |
|
Definition
Activated carrier used extensively in biosynthetic pathways
Contrast with the us of NAD+ in catabolic pathways |
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Term
|
Definition
Cytotoxic cell of the innate immune system that can kill virus-infected cells; shares a common progenitor with T-cells and B-cells |
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Term
|
Definition
Quantitative expression that relates the concentrations of an ion across a membrane to the voltage difference (E = RT/zF ln ([out]/[in])) |
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|
Term
neural cell adhesion molecule (N-CAM) |
|
Definition
Cell adhesion molecule of the Ig superfamily, expressed by many cell types including most nerve cell and mediates cell-cell attachment independent of Ca2+ |
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Term
|
Definition
General term for a process from a nerve cell in culture; does not specify if it is an axon or dendrite |
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Term
|
Definition
White blood cell that enters inflamed/infected tissues and uptakes particulate material by phagocytosis |
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Term
|
Definition
Biochemical process by which certain bacteria reduce atmospheric nitrogen to ammonia |
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Term
|
Definition
Chain of sugars attached to a protein through the NH2 of an asparagine |
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|
Term
noncyclic phosphorylation |
|
Definition
Photosynthetic process that produces both ATP and NADPH in plants and cyanobacteria |
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Term
|
Definition
Mechanism for removing aberrant mRNAs containing premature stop codons before they can be translated |
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Term
|
Definition
Receptor protein heavily involved in development determination, and is activated by cleavage in response to binding cell-surface ligands on other cells |
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Term
|
Definition
Stiff rod of mesoderm that runs along the dorsal side of all chordate embryos; becomes incorporated into the vetebral column in vertebrates |
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Term
|
Definition
Protein with ATPase activity that disassembles vSNARE and tSNARE complexes in vesicle fusion |
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Term
|
Definition
Subunit of the intermediate filaments of the nuclear lamina |
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Term
|
Definition
Region of a chromosome containing a cluster of rRNA genes that gives rise to a nucleolus |
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Term
|
Definition
Any of a number of proteins that make up a nuclear pore complex |
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Term
|
Definition
Molecule composed of a purine/pyrimidine base linked to a sugar |
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Term
|
Definition
Cell junction that seals cells together in an epithelium, forming a barrier that even blocks small molecules |
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Term
|
Definition
Glial cell that forms myelin sheaths around multiple axons |
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Term
|
Definition
Addition of an oligosaccharide chain to the OH group of a Ser or Thr side chain |
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Term
|
Definition
A bacterial group of contiguous genes transcribed into a single mRNA molecule |
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|
Term
origin recognition complex (ORC) |
|
Definition
Large protein complex bound to the DNA at origins of replication throughout the cell cycle in eucaryotes |
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Term
|
Definition
Macrophage-like cell that erodes bone, enabling it to be remodeled and allowing expansion/growth; contrast with osteoblasts, which secrete bone matrix |
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Term
|
Definition
Nuclear membrane continuous with the ER and studded with ribosomes |
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Term
|
Definition
Mitotic or meiotic spindle microtubule interwoven at the equator with microtubules from the other pole |
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Term
oxidative phosphorylation |
|
Definition
Process in bacteria and mitochondria in which ATP formation is driven by transfer of electrons from food to molecular oxygen. Involves generation of an electrochemical gradient and chemiosmotic coupling |
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Term
|
Definition
Third stage of meiosis I, in which synapsis is complete |
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Term
|
Definition
Production of a new individual from an unfertilized egg |
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Term
|
Definition
Electrophysiological technique that attaches a tiny electrode tip to a patch of cell membrane to record the flow of current through individual ion channels |
|
|
Term
peripheral/secondary lymphoid organ |
|
Definition
Lymphoid organs in which T and B cells interact with foreign antigens, e.g. spleen, lymph nodes |
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Term
|
Definition
Small membrane-bound organelle that uses molecular oxygen to oxidize organic molecules |
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Term
|
Definition
Technique for detecting protein interactions by repeatedly screening a library of genetically modified phages against an affixed protein |
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|
Term
phase-contrast microscope |
|
Definition
Light microscope that exploits interference effects; used to view living cells |
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|
Term
phosphatidylinositol 3-kinase (PI3K) |
|
Definition
Kinase activated by cell surface receptors; involved in intracellular signaling pathways; phosphorylates phospholipids at the inositol ring |
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Term
|
Definition
Cleaves membrane phospholipids to diacylglycerol (DAG) and inositol triphosphate (IP3)
Activated by Gq proteins |
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Term
|
Definition
Cleaves membrane phospholipids to diacylglycerol (DAG) and inositol triphosphate (IP3);
Activated by receptor tyrosine kinases |
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|
Term
photosynthetic electron-transfer |
|
Definition
Light-driven photosynthesis reactions that move electrons along a transport chain in the thylakoid membrane, generating ATP and NADPH |
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Term
|
Definition
Structure made of microtubules and actin filaments that forms in a prospective plane of division in a plant cell; guides formation of a cell plate |
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Term
|
Definition
Cell-cell junction in plants that connects the cytoplasm of adjacent cells |
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|
Term
pleckstrin homology domain (PHD) |
|
Definition
Domain found in intracellular signaling proteins that binds to inositol phospholipids phosphorylated by PI3K |
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Term
|
Definition
The faster growing end of a microtubule or microfilament |
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Term
|
Definition
Describes a gene with many different alleles, none of which is predominant in the population |
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Term
|
Definition
mRNA molecule with a number of actively translating ribosomes attached |
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Term
|
Definition
A cell's internal record of its position in a multicellular organism |
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Term
|
Definition
Covalent attachment of an isoprenoid CH2=(C-C)-CH=CH2 lipid group to a protein |
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Term
|
Definition
Cell set aside early in embryonic development that is a precursor to cells that will give rise to gametes |
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Term
|
Definition
Complex of DNA primase and DNA helicase formed on the lagging strand of a replication fork, thereby improving replication efficiency |
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Term
|
Definition
Kinase activated by Ca2+ and diacylglycerol (DAG) and phosphorylates target proteins on specific Ser and Thr kinases |
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Term
|
Definition
Molecule consisting of one or more glycosaminoglycan chains attached to a core protein |
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Term
|
Definition
Technique for following the movement of a substance through a cellular pathway by briefly adding labeled substrate ("pulse") followed by unlabled substrate ("chase") |
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Term
|
Definition
Small, lipid soluble mobile electron carrier molecule found in the respiratory and photosynthetic transport chains |
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Term
|
Definition
Family of monomeric GTPases in the PM and organelle membranes involved in specificity of vesicle docking |
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Term
|
Definition
Monomeric GTPase present both in cytosol and nucleus required for the active transport of macromolecules in/out of the nuclear pore complex; hydrolysis of the GTP is thought to provide the energy for this transport |
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Term
|
Definition
Large family of GTP-binding proteins that help relay signals from cell surface receptors to the nucleus |
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Term
|
Definition
Procaryotic DNA repair protein thought to be the prototype for a class of DNA-binding proteins that catalyze synapsis of homologous DNA during genetic recombination |
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Term
|
Definition
Large vesicle formed from a fragment of an endosome as an intermedite stage on the passge of recycled receptors back to the plasma membrane |
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Term
|
Definition
Pair of molecules in which one acts as an electron donor and the other as an acceptor |
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Term
|
Definition
Affinity of a redox pair for electrons, generally measured as the voltage difference between an equimolar mixture of the pair and a standard reference, e.g. NADH/NAD+ has low potential, O2/H2 has high potential |
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Term
|
Definition
General term for the oxidative breakdown of sugars or other organic molecules using O2 and producing CO2 and H2O as waste |
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Term
|
Definition
Approach to discovering gene function by starting from a gene and protein and creating mutants to analyze its function |
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Term
|
Definition
Light-sensitive GPCR in the rod photoreceptor cells in the retina |
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Term
|
Definition
Production of a functional mRNA by insertion or alteration of nucleotides in an RNA molecule after it is synthesized |
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Term
|
Definition
Pre-assembled complex with most of the transcription factors required for functioning and the mediator protein complex |
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Term
|
Definition
Degradation of RNA intended to remove foreign RNAs e.g. viruses. Fragments cleaved from dsRNA direct degradation of similar RNA sequences |
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Term
|
Definition
Photoreceptor cell in the retina responsible for noncolor vision in poor light |
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Term
|
Definition
Cancer of connective tissue |
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Term
|
Definition
Repeating unit of a myofibril in a muscle cell, composed of an array of overlapping myosin and actin filaments between two adjacent Z discs |
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Term
|
Definition
Regions of highly repetitive eucaryotic DNA, usually identifiable by its unusual nucleotide composition; not transcribed and has no known function |
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Term
|
Definition
Family of cell surface sugar-binding proteins that mediate transient Ca2+-dependent cell-cell adhesion in the bloodstream, such as white blood cells rolling on the endothelium of blood vessels |
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Term
|
Definition
Occluding cell junction in invertebrates; ladder structure is distinct from vertebrate tight junctions |
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Term
|
Definition
Domain that binds short amino acid sequences containing phospho-Tyr |
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Term
|
Definition
Domain that binds Pro-rich sequences |
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Term
|
Definition
Enzyme that removes terminal signal sequences once protein sorting processes are complete |
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Term
signal-recognition particle (SRP) |
|
Definition
Ribonucleoportein particle that binds an ER signal sequence in a partially synthesized polypeptide and delays translation and directs the polypeptide to the ER |
|
|
Term
small nuclear RNA (snRNA) |
|
Definition
Small RNA molcules complexed with proteins to form ribonucleoproteins involved in RNA splicing |
|
|
Term
smooth endoplasmic reticulum |
|
Definition
Region of the ER involved in lipid synthesis |
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Term
|
Definition
Family of transmembrane proteins present in organelle membranes and vesicles involved in guiding vesicles to correct destinations; they exist in pairs, a v-SNARE of a vesicle binds specifically to a complementary t-SNARE at the target membrane |
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Term
|
Definition
Protein associated with the cytosolic side of the plasma membrane in erythrocytes, forming a rigid support network |
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Term
|
Definition
Specialized tissue at the dorsal lip of the blastopore in an amphibian embryo that acts as a source of differentiation signals |
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Term
spindle-attachment checkpoint |
|
Definition
Checkpoint during mitosis that occurs before anaphase |
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Term
|
Definition
Large assembly of snRNP ribonucleoproteins that performs pre-mRNA splicing |
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Term
|
Definition
Family of cytoplasmic tyrosine kinases that associate with the cytoplasmic domains of some enzyme-linked receptors (e.g. T cell receptors) that lack intrinsic Tyr-kinase activity |
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|
Term
standard free energy change |
|
Definition
Free energy change of two reacting molecules at 25C and 1atm when all components are at a concentration of 1M/liter |
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Term
|
Definition
Short amino acid sequence that enables a polypeptide to start being translocated across the ER membrane; multipass membrane proteins have both N-terminal and multiple internal signals |
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Term
|
Definition
Large, rigid microvillus found on the apical surface of hair cells in the ear; arranged in "organ pipe" arrays and mechanically gated |
|
|
Term
stimulatory G protein (Gs) |
|
Definition
G protein that when activated, activates the enzyme adenylyl cyclase and stimulates production of cAMP |
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Term
|
Definition
Hydrophobic amino acid sequence that halts translocation of a polypeptide through the ER membrane, anchoring the polypeptide in the membrane |
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Term
|
Definition
Structural connective tissue in which glandular or epethilia are embedded; contrast with parenchyma, functional tissue |
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Term
|
Definition
Region of DNA that codes for an actual transcriptional/translational product, rather than a region that regulates gene expression |
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Term
|
Definition
Solid surface to which a cell adheres |
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Term
|
Definition
Chemical group containing -SH; found in the amino acid Cys; two of these can form a disulfide bond |
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Term
|
Definition
The initial formation of base pairs between complementary DNA strands in genetic recombination, OR the pairing of maternal/paternal chromosomes as they become attached along their length |
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Term
|
Definition
Structure that holds paired chromosomes together during prophase I; promotes genetic recombination |
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Term
|
Definition
Mass of cytoplasm containing multiple nuclei enclosed by a single membrane; typically the result of cell fusion or incomplete division cycles of just the nuclei but not the cytoplasm |
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Term
|
Definition
The presence of the same genes in the same order on chromosomes of different species |
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Term
|
Definition
Consensus sequence in the promoter of eucaryotic genes that binds general transcription factors and specifies where transcription is initiated |
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Term
|
Definition
Signal in bacterial DNA that halts transcription |
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Term
|
Definition
High-energy bond formed by condensation between an acyl (acid) (-COR) group and an thiol group (-SH); e.g. those seen in acetyl CoA |
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Term
|
Definition
Flattened chloroplast membrane sac containing chlorophyll and pigments and carries out light-trapping reactions of photosynthesis. Stacks of these form grana. |
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Term
|
Definition
Cell-cell junction that seals adjacent epithelial cells together, preventing the passage of most molecules past the epithelial sheet |
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Term
|
Definition
Protein translocators in the mitochondrial membranes |
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|
Term
Toll-like receptor family (TLRs) |
|
Definition
Family of mammalian pattern-recognition receptors abundant on macrophages, neutrophils, and gut epithelia; recognizes pathogen-associated molecules such as lipopolysaccharide and peptidoglycan |
|
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Term
|
Definition
Golgi face at which material leaves the Golgi for the surface or another rcell compartment |
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|
Term
transcription attenuation |
|
Definition
Inhibition of bacterial gene expression by premature termination of transcription |
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Term
|
Definition
The uptake of material at one face of a cell, transfer across in vesicles, and discharge from another face |
|
|
Term
transforming growth factor-beta superfamily |
|
Definition
Family of secreted proteins that act as hormones and local mediators to control a wide range of functions, including development; e.g. activins, BMPs |
|
|
Term
transition state
[biochemistry] |
|
Definition
Transient structure in the course of a chemical reaction and has the highest free energy; formation of this state is a rate-limiting step |
|
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Term
|
Definition
Control of gene expression by selection of which mRNAs are translated |
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Term
|
Definition
RNA splicing present in a few eucaryotes where two separate RNAs are joined to form one mRNA |
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|
Term
type III secretion system |
|
Definition
Bacterial system for delivering toxic proteins into host cells |
|
|
Term
unfolded protein response |
|
Definition
Cellular response triggered by accumulation of misfolded proteins in the ER; involves increased ER chaperones and degradative enzymes |
|
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Term
|
Definition
Carrier protein that transports a single solute from one side of a membrane to the other |
|
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Term
|
Definition
Yolk-rich end of an animal egg |
|
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Term
|
Definition
Site in an X chromosome in which inactivation/packaging into heterochromatin is initiated and spread outwards |
|
|
Term
|
Definition
Platelike region of sarcomere to which the plus ends of actin filaments are attached |
|
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Term
|
Definition
Second stage of meiosis I in which the synaptonemal complex begins to form between the sets of sister chromatids in each bivalent chromosome |
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|