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Microbiology
Lab Practical
114
Biology
Undergraduate 3
04/01/2008

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Term
Psychrophile
Definition

Optimal growth between -5C and 20C

Found in supercooled waters 

Term
Mesophile
Definition

Optimal growth between 20C and 50C;

Most bacteria fall into this class 

Term
Thermophile
Definition
Optimal growth between 50C and 80C
Term
Hyperthermophile  
Definition
Growth optimum above 80C
Term
Psychrotroph  
Definition
Bacteria within the class capable of growth at temperatures lower or higher than their optima.
Term
Serratia marcescens
Definition
Produces red pigment
Term
Spectrophotometer
Definition
Used to measure turbidity densities
Term
Example of organism that grows best at room temperature
Definition
Serratia marcescens
Term
Neutrophile
Definition
Grow at or near neutral pH
Term
Acidophiles  
Definition
Grow at acidic pH values
Term
Alkaliphiles
Definition
Bacteria that grow at alkaline pH values
Term
Example of organism that grows best in neutral pH
Definition
Escherichia coli or staphylcoccus aureus
Term
Example of alkaliphile  
Definition
Alcaligenes faecalis or bacillus
Term
Example of acidophile
Definition
Saccharomyces cervisiae
Term
Plasmolysis
Definition

Occurs when a cell is in a hypertonic environment.

The cell shrinks.  

Term
Halophiles  
Definition
Bacteria that requires high concentrations of sodium chloride
Term
Halotolerant and example
Definition

Capable of growth in moderate concentrations.

Staphylococcus aureus 

Term
Osmophile
Definition
Able to grow in environments where sugar concentrations are excessive.
Term
[image]
Definition

E.Coli - Gram negative

Short rods 

Term
Coliforms  
Definition

Indicator bacteria that ferment lactose to produce acid and gas.

Gram-negative

Facultative anaerobic

Non-endospore forming 

Term
Standard Plate Count
Definition
Number of colonies x dilution factor = number of bacteria in original colony
Term
Colony forming units
Definition
30-300 cfus are statistically valid
Term
Presumptive Test
Definition

Lactose broth is inoculated to test for production of gas.

 

Term
Confirmed Test
Definition
Plates of Levine EMB agar or Endo agar are inoculated from positive tubes to see if the organisms are Gram-negative.
Term
Levine EMB agar
Definition

Coliforms produce small colonies with dark centers(nucleated colonies).

Inhibits Gram-positive bacteria.

Contains methylene blue. 

*Note - can appear metallic green due to E. Coli 

 

Term
Endo agar
Definition

Contains fuchsin sulfite indicator 

The colonies are red = lactose fermenter

Inhibits gram-positive growth.

*Note- Can appear metallic green due to E.Coli 

Term
Completed Test
Definition
IMViC tests
Term
Thermal Death Point
Definition
Temperature at which an organism is killed in 10 minutes.
Term
Thermal death time
Definition
Time required to kill a suspension of cells at a given temperature.
Term
[image]
Definition
Endo Agar
Term
[image]
Definition
EMB agar
Term
[image]
Definition

Fluid thioglycollate medium

(FTM) 

Term
Results for Kirby-Bauer Method
Definition

Proteus most susceptible

P. Aeruginosa most resistant 

Term
[image]
Definition

1st Tube: No motility

2nd Tube: Motility

ei: Proteus 

Semi-soft agar 

Term
[image]
Definition

1st Tube: Control

2nd Tube:K/K = No sugar fermented  

3rd Tube: K/A = ONLY glucose fermented 

4th Tube:A/A gas

5th Tube:A/A gas, H2S

6th Tube: K/A gas H2S

Term
[image]
Definition

Urease Test

Positive: Hot pink

Negative: Yellow 

Urea is being converted ammonia which raises the pH 

Term
Dyes used for simple staining
Definition

Methylene blue

Basic fushsin

Crystal violet

 

Term

Pleomorphism

Metachromatic  granules

Palisade arrangements 

Definition

Irregularity of form

Distinct reddish-purple granules within cells after being stained with methylene blue.

Parallel arrangement of rod-shaped cells. 

Term
[image]
Definition

Negative Staining  - Nigrosin and India Ink

Term
[image]
Definition

Positive Acid Fast = Pink

Negative = Methylene Blue

 

Mycolic Acid found in Mycobacteria 

Term
[image]
Definition

Endospore

Schaeffer-Fulton Method 

Term
Acid-Fast Staining
Definition

Positive = Red

Negative = Blue 

Term
[image]
Definition

MacConkey

Selects for Gram negative,lac positive

colonies will be red 

Term
[image]
Definition
Acid-Fast Staining
Term
[image]
Definition

Indole Positive = Cherry Red Ring

Negative = No color change

 

Reagent:  Kovac 

Term
[image]
Definition

Can organism use citrate as a source of carbon

Green-->negative you dumb fuck

Blue-->positive

Term
This is what we all wish wendy the AI looked like
Definition
[image]
Term

[image]

What bacteria is this? 

Definition

E. Coli

 

Gram Stain Negative 

Term
[image]
Definition

Test for cytochrome c

Scrape will turn purple after about 5 seconds 

Term

[image]

What bacteria is this? 

Definition

Staphalacoccous Aureus

 

Gram Positive 

Term
What shape is Psuedomonas?
Definition
Short Rod
Term
[image]
Definition

MSA agar

Staph Aureus will turn yella

Selects for halotolerant bacteria 

Term

What shape is seratia?

 

Definition

Short Rod

 

Gram Negative 

Term

What shape is Proteus?

 

Definition

Short Rods

 

Gram Negative 

Term
[image]
Definition

Tube 1: Obligate Aerobes

Tube 2: Faculatative Anaerobe 

Tube 3: Aerotolerant Anaerobe 

Tube 4: Obligate Anaerobe 

Term
Coagulase and Catalyse Positive test?
Definition
Staph Aureus
Term
Coagulase and Catalyse Negative?
Definition
Staph epidermis
Term
[image]
Definition

Top is alpha hemolyis = green streaks

Bottom is beta hemolysis = clear/white streaks

 

Gamma hemolysis = See streak pattern but no color change 

Term
[image]
Definition
Rhizopus
Term
Bacteriophage
Definition
Viruses that infect bacterial cells
Term
Obligate Intracellular parasites
Definition
Organisms that must invade a host cell in order to replicate and reproduce.
Term
Nucleocapsid
Definition
The area that contains the nucleic acid and protein capsid.
Term
Sheath
Definition
The area under the nucleocapsid that contracts and contains a hollow tube in its center.
Term
Base plate
Definition
The area in which the sheath sits and where the tail fibers are connected.
Term
Virion 
Definition
A single virus or phage particle
Term
4 steps of lytic phage infection
Definition

Recognition

Penetration

Replication

Release 

Term
Burst size
Definition
The number of phage particles that one bacteriophage can produce.
Term
Plaques
Definition
The clear area formed by the phage in the confluent lawn.
Term
Antibiotic vs. Antimicrobial
Definition

Antibiotic - Usually produced by microorganisms that inhibit or kill other microorganisms.

 

Antimicrobial - Usually chemically synthesized. 

Term
Zone of Inhibition
Definition
A clear zone that forms if the agent kills the test organisms.
Term
Brightfield Microscope
Definition
A microscope that allows light ray to pass directly to the eye without being deflected by an intervening opaque plate.
Term
Ocular
Definition
The eyepiece that consists of 2 internal lenses with a magnification of 10x
Term
List the 3 objective lenses in order
Definition

Low power - 10x

High-dry - 40x

Oil-immersion-100x 

Term
Condenser
Definition

Located under the stage.

Collects and directs the light from the lamp to the slide. 

Term
Diaphragm
Definition
Located in the condenser and regulates the amount of light that reaches the slide.
Term
Resolving power
Definition

The ability of seperate two objects in a microscopic field.

Limit of resolution - 0.2 micrometers 

Term
Why do you use oil?
Definition
It has the same refractive index as glass so it limits light lost due to refraction.
Term
Parfocal
Definition
An image that will remain in focus when changing from a lower power objective lens to a higher one.
Term
Working distance
Definition
The distance between the lens and the microscope slide.
Term
Darkfield Microscope
Definition

Star diaphragm

Cardioid condenser

Contains an opaque disk that blocks the central rays of light.  

Term
Phase Shift
Definition
Light rays that are slowed down by 1/4 wavelength.
Term
Direct rays
Definition
Rays that pass straight through an object unaffected by medium.
Term
Diffracted Rays
Definition
The rays that are bent because they are retarded by the object.
Term
Annular Stop
Definition
Allows only a hollow cone of light rays to pass through the condenser
Term
What are the two subkingdoms of Protists?
Definition

Protozoa - all have cysts

 Algae - have chloroplasts and pellicle

synthesize starch 

 

Term
Cell wall of bacteria
Definition
Your a fucking idiot if you don't know its peptidoglycan
Term
Two techniques for pure culture
Definition

Streak Plate - Involves more skill

Pour plate - Involves mroe media, plates, etc.

Term
Glycocalyx
Definition

Same thing as capsule.

Plays a protective role and prevents phagocytic white blood cells. 

Term
Two genera that can produce endospores
Definition
Bacillus and Clostridia
Term
Two methods to stain spores
Definition

Schaeffer-Fulton Method

Dorner Method 

Term
Bacteria in what gnus contain mycolic acid
Definition
Mycobacterium and Nocardia
Term
How do you stain organisms that contain mycolic acid?
Definition

Carbolfuschin and heat.

Acid-fast appears red

Non acid-fast appears blue. 

Term
Brownian Motion
Definition

Movement caused by currents under the cover glass.

Not true motility 

Term
Range of UV light
Definition

4-400nm

 

Note: Shorter wavelength - more damaging to cells

260nm UV light is most germicidal because DNA absorbs the most UV light at this wavelength. 

Term

What happens when DNA absorbs UV light?

 

SOS 

Definition

Pyrimindine Dimers form from adjacent T's or C's.

 

Enzymatically removes dimers and inserts new pyrimidines.

Term

Antiseptics

Disinfectant and two types

Bacteriostatic

Bacteriocidal 

Definition

Antiseptics - Alcohol or betadine - inhibits microbial growth and can be applied to tissues.

 

Disinfectants - Chemical agents applied to inanimate objects.

 Sterilants/Sporocides - destroy all microbial life and endospores

Santizer - Reduce microbial number to safe levels but does not kill them.

 

Bacteriostatic - only inhibit growth of bacteria

Bacteriocidal - kills bacterial cells. 

 

Term
Pyogenic
Definition

Pus-forming

Staphylocci and streptococci

 

Term
Nosocomial
Definition

Hospital-acquired.

 

Note: Most of the human population are carriers of staphylococci 

Term
Characterisics of Staphylococci
Definition

Gram-positive

Non-spore forming

Cocci

From Dense clusters of cells or singularity.

Term

Why is staph aureus pathogenic?

Where is it found?

What conditions will it grow in? 

Definition

It can coagulate plasma

Found in the nose

Halotolerant - 10% NaCl 

Term
Mannitol salt agar (MSA)
Definition

Contains mannitol (duh)

The NaCl inhibits organisms other then staph (selective)

If mannitol is fermented to produce acid - phenol red changes to yellow. 

Term
Staphylococcus medium 110 (SM110)
Definition

Contains NaCl and mannitol but lacks phenol red.

It favors colony pigmentation by different strains of

S. Aureus. 

Term

Coagulase Test

Which bacteria can cause a false positive reaction? 

Definition

Used to confirm identification of S. Aureus.

 

Pseudomonas can cause false postive reaction. 

Term
DNase Test
Definition
Can be used because coagulase-positive bacteria are also able to hydrolyze DNA.
Term
Name two differences between Streptococci and Staphylococci.
Definition

Streptococci:

Occur in chains rather than in clusters.

Lack catalase which degrades hydrogen peroxide to form water and oxygen.

Able to cause lysis of red blood cells. 

Term

Beta-hemolytic

Alpha-hemolytic 

Definition

Beta - most serious and produces a clear zone.

Alpha - partial hemolysis of the red cells. 

Term
Exoenzymes
Definition

Enzymes secreted outside the cell to degrade large macromolecules.

 

Note : Bacteria cannot carry out phagocytosis because of rigid cell wall. 

Term

Oxidative Phosphorylation

Substrate level phosphorylation 

Definition

Oxidative - the shuttling of electrons down an electron transport chain involving cytochrome facilitates the movement of the protons to the outside of the cell.

 

Substrate - how ATP is synthesized in fermentation. 

Term
Fermentation Tests
Definition

O/F glucose test

Carbohydrates in Durham tubes.

Methyl Red test

Voges-Proskauer Test

Citrate Test - Blue (positive)

Green(Negative) 

Term
Oxidative Tests
Definition

Oxidase Test - Checks of cytochrome C, turns purple

Catalase test - catalase degrades hydrogen peroxide into oxygen and water.

Nitrate Reduction - some facultative anaeroces can use nitrate as a terminal electron acceptor. 

Term
API 20E System
Definition
A miniaturized version of conventional tests that is used for the identification of members fo the family Enterobacteriaceae and other gram-negative bacteria.
Term
Two medically important enteric pathogens
Definition
Salmonella and Shigella
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