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Microbiology
Unit 1
139
Medical
Undergraduate 1
09/26/2019

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Term
Microbiology
Definition
the study of microorganisms or microbes
Term
Normal Flora
Definition
a microorganism that is normally found in a certain area of the body and under normal conditions do not cause any harm
Term
Microbiome
Definition
site in the human body where you will find bacteria or normal flora
Term
Disease
Definition
any disruption of normal body functioning
Term
Infectious diseases
Definition
a disease caused by a microorganism
Term
Pathogens
Definition
are microorganisms capable of causing a disease
not all pathogens cause disease- only if condition is right
Term
Parasites
Definition
microorganisms that live on another living organism called a host and usually cause harm to the host
Term
Host
Definition
living organism
Term
Bioburden
Definition
the number of microorganisms on a contaminated object, surface, device, or instrument -the instrument is not clean
Term
Biofilm
Definition
group of organisms that stick to each other or adhere to the surface of an instrument. these adherent cells are frequently embedded with a self produced matrix of extracellular polymeric substance( EPS)
Term
Hippocrates
Definition
(460 BC) - used wine and water, boiled them for instruments and irrigation “Father of Medicine”
Term
Galen
Definition
(131-210 AD) - boiled instruments and authored medical writings
Term
Vesalius
Definition
(16th Century) Brussels, Germany. - considered one of the founders of modern anatomy
Term
Hooke
Definition
discovered that cells are the smallest living units, looked at cork with a simple microscope and could see the honeycomb “cell” and a living organism
Term
Leeuwenhoek
Definition
(1676) - designer of the first microscope
Term
Jenner
Definition
(1798) - smallpox vaccine, first noticed milkmaids did not get cowpox, inoculated young boy (his son) with cowpox, blistered, another inoculated again, and smaller reaction, another inoculation, then no reaction
Term
Louis Pasteur
Definition
invented the process of pasteurization, such as with milk, known as the founder of the science of microbiology, discovered the difference between aerobic (need oxygen)and anaerobic (no oxygen) reactions
Term
Florence Nightingale
Definition
nurse, instrumental in use of sanitation in hospitals and military wards, used clean items for each patient, she developed the use of using caps to cover hair and keep away from patients, nurse’s pledge
Term
Robert Koch
Definition
(1877) -
discovered that anthrax was caused by the bacteria Bacillus anthracis, caused cutaneous and pulmonary problems, bacteria lived within the soil, animal would get it, and could pass it onto people;
developed the petri dish and the use of agar (nutrient medium); started to understand that certain organisms would cause certain diseases;
discovered that tuberculosis was caused by a Mycobacterium tuberculosis
Term
Von Bergman
Definition
(1886) - instituted steam sterilization
Term
Halsted
Definition
(1897) - first to use rubber gloves, nurse had reaction to antiseptics and had Goodyear rubber make gloves for nurse to use during surgeries, he became addicted to cocaine and morphine and left medicine because of it
“Asepsis is a chain as strong as its weakest link.” (know quote)
1910 was when using gowns, gloves, masks, sterilized instruments were becoming standard
Term
Alexander Fleming
Definition
(1928) - discovery of penicillin (first antibiotic), but was not used really until the 1940s
Term
Streptomycin
Definition
1943 an antibiotic, first effective treatment for tuberculosis
Term
Watson and Crick
Definition
(1953) - discovered the structure of DNA (deoxyribonucleic acid)
Term
Salk
Definition
(1955) - developed the vaccination for polio, but his was the killed vaccine, injectable inoculation
Term
Sabin
Definition
(1961) - developed the attenuated (weakened) polio vaccine, oral vaccine
Term
1981
Definition
first cases of AIDS was identified; in 1997 they declared the HIV infection as a pandemic
Term
1982
Definition
first vaccine for hepatitis B was licensed, a recombinant DNA vaccine (genetically engineered for specific virus)
Term
1963
Definition
measles vaccine, rubiolla
Term
Cell morphology
Definition
the study of cell formation and structure
Term
All living cells are classified into two groups
Definition
Eukaryotes/ Prokaryotes
Term
Eukaryotes
Definition
a complex cell; includes protozoa, fungi, all plant and animal cells, including human . REPRODUCE BY MITOSIS
Term
Prokaryotes
Definition
less complex cells that include bacteria. REPRODUCES BY BINARY FISSION
Term
Nomenclature
Definition
The system of naming
The scientific nomenclature of naming organisms comes from the 18th century by Carolus Linnaeus
They call the this Latin system binomial nomenclature
Every living organism has 2 names
Term
Genus
Definition
capitalized- generic name
Term
species
Definition
lower case - specific name
Term
Bacteria
Definition
Unicellular - does not require living tissue to survive
Classification - shape and size are how they are going to be classified
Pathogenic or non-pathogenic - they may or may not be capable of causing a disease
Term
Bacilli
Definition
rod-shaped, straight, cylindrical
Term
Cocci
Definition
spherical, circular, round shaped
Term
Staphylococci
Definition
abnormal clusters, grape-like
Term
Streptococci
Definition
chains
Term
Diplococci
Definition
two together, pairs
Term
Vibrios
Definition
curved or comma-like, kidney bean shaped
Term
Spirillae
Definition
cork-screw shaped, rods, but no active movement
Term
Spirochetes
Definition
cork-screw, rod shape, but with active movement
Term
Spores
Definition
protective, dormant form that bacteria can stay in until the condition is right for reproduction
Term
Capsules
Definition
protective layer that can surround a bacterial cell, which protect the bacteria from being eaten
Term
Flagella
Definition
hair-like processes that allow the bacteria to move in rhythmic contractions, usually though a liquid
Term
Endotoxins
Definition
is contained in the cell wall of Gram negative bacteria and are released when the cell dies and disintegrates
Term
Exotoxins
Definition
diffuses out of the intact Gram positive bacteria and is more potent and the bacteria is still alive
Term
MDRO (Multi- Drug Resistant Organisms)
Definition
This is when bacteria can become resistant to antibiotics.
antibiotic usually effective for that type of bacteria will have no effect on the bacteria
bacteria produces an enzyme which causes this
Term
Binary Fission
Definition
bacteria reproduce by this process

chromosome duplicates itself and the original cell divides into 2 identical cells
Term
Cell wall
Definition
determines shape of bacteria
allows for the laboratory procedure gram staining to identify the bacteria
Gram positive/ Gram negative
the cell wall is where most antibiotics work. Antibiotics damage cell wall and this will destroy bacteria
Term
Cell membrane
Definition
controls the movement of nutrients in and out of a cell
Term
Cytoplasm
Definition
the fluid within a cell
Term
DNA
Definition
found in the cytoplasm and gives the bacteria its characteristics, provides for metabolism (reactions) and ability to reproduce
Term
Plasmids
Definition
having to do with chromosome and deals with reproduction
Term
Gram Staining
Definition
Color given to a cell wall to make it easier to see microscopically for identification and study
Term
Gram negative
Definition
red or pink is Gram negative with thinner cell wall, less resistant to penicillin
Term
Gram positive
Definition
blue or purple is Gram positive with thicker cell wall, more resistant to penicillin
Term
Christian Gram
Definition
1884 Danish physician who invented this technique
Term
The 4 steps to gram staining:
Definition
1. Flood dye, wash off

2. Flood dye, wash off

3. Decolorizer, wash off

4. Flood dye, wash off
Term
Acid-fast stain
Definition
red dye, carbolfuchsin, is used on mycobacterium
Petri Dish
Term
Bacteria grow best at what Temperature?
Definition
68-98.6 degrees for most bacteri
Term
Bacteria grow best at what Moisture?
Definition
most need some sort of moist environment, but some can only survive in dry environments
Term
Strict Aerobes
Definition
bacteria that have to have only oxygen to survive
Term
Strict Anaerobes
Definition
bacteria that have to live with no oxygen
Term
Facultative
Definition
bacteria that can live in either/or environment; oxygen or no oxygen
Term
Autotrophs
Definition
create own food from simple substances in their surroundings; oxygen, sulphur, minerals, light
Term
Saprophytes
Definition
an organism that feeds on dead or decaying material
Term
Parasites
Definition
organism that gets their nutrition from a living source
Term
pH and Bacteria
Definition
acidity or alkaline, most prefer more alkaline environments
Term
Light Source and Bacteria
Definition
light kills most bacteria, particularly those that prefer the darkness
Term
Rickettsias
Definition
obligatory parasite, Rocky Mountain Spotted Fever (spread by tick), Typhus (spread by body lice), spread by arthropods
Term
Chlamydia
Definition
obligatory parasite, Trachoma (eyes, causes conjunctivits and may cause scar tissue on cornea and lead to blindness), Chlamydia (STD, can present as the genitourinary infection, in females can present with little to no symptoms (difficulty urination, bleeding, pain) and men usually have symptoms) both partners need to be treated to cure
Term
CHLAMYDIAS AND RICKETTSIAS TREATMENT
Definition
Tetracycline, Doxycycline
Term
VIRUSES
Definition
Smallest microorganism known and can only be seen with a microscope
Obligatory parasite
A virus is not a cell
A virus must have a host
incapable of multiplying outside of a host
Term
Capsid
Definition
protein coat
Term
Core
Definition
DNA or RNA
Term
MUTATION
Definition
how a virus changes
Term
VIRUS TREATMENT
Definition
our antibodies can kill the virus when it is not in the host cell
the virus can simply run its course
the virus can become dormant or latent
antiviral medications
Term
VIRUS Examples:
Definition
Herpes Simplex
Chicken Pox
Common Cold
Hepatitis
HIV
Polio
Term
PRION
Definition
a specific protein found mostly in brain tissue
an infectious prion is a malformed protein that causes a normal prion protein to malform and replicate
Term
Prion diseases are
Definition
transmissible not communicable
transmission requires a fomite (non-living object)
communicable is person to person
Term
Prion diseases:
Definition
have very long incubation periods
no vaccines
no effective cure
Term
Creutzfeldt-Jakob disease
Definition
caused by infectious prion, it can be transferred from surgical instruments
Term
FUNGI
Definition
Can be called both unicellular which is called a yeast or mycosis or multicellular which is called a mold or mycoses

2. Most fungi are SAPROPHYTES, that is, they live on DEAD organic matter
Term
Examples of fungal infections : Candida Albicans
Definition
(yeast) - resident flora, may be considered a yeast; found on the skin, mouth, intestines, and vagina; cause UTI; when they become plentiful, colonies will cause infection; dangerous if the infection spreads to the bloodstream
antibiotics can cause yeast infections
on the skin is superficial, inside the body is systemic
Term
Examples of fungal infections: Ringworm
Definition
called tinea; not a worm but a virus; can be acquired from people or animals; usually presents in circular, scaly patches
Tinea pedis is athlete’s foot; most common form
Term
Examples of fungal infections : Systemic Mycoses
Definition
more serious; they occur when the fungi gain access to the inside of the body; oftentimes it is because they are inhaled;
histoplasmosis: related to birds and bats; carry fungus in droppings and can be inhaled by humans; symptoms are flu-like in mild cases; wear masks when cleaning chicken coops, exploring caves with lots of bats, or when remodeling or leveling of old buildings
Term
fungal infections TREATMENT
Definition
Antifungal medications. Effective drugs for serious systemic mycoses (amphotericin B)
hard on liver and kidneys (over a long period of time)
Term
PROTOZOA
Definition
Unicellular animal. Adjusts well to life in freshwater or saltwater and soil
Mobile with flagella or cilia
Microscopic
can form cysts (dormant cells that are resistant to heat, cold, or drying out and are able to survive passage from host to host)
need fecal samples to diagnose
Term
Entamoeba histolytica
Definition
(amebic dysentery) intestinal disease; ingestion by food or water that was infested with these
Term
Giardia lamblia
Definition
(giardiasis) - diarrhea, ingestion by food or water that was infested with these; can be an issue in daycares if staff does not wash hands prior to preparing food;
Term
PROTOZOA TREATMENT
Definition
medications are available that can treat most protozoan infections
Term
WORMS
Definition
Simple multicellular animal
Lives within a host and uses the hosts blood or nutrients as food
Called a Helminth infection
Term
WORMS- Chinese Liver Fluke
Definition
( from ingesting raw fish that contain worm cysts) (abdominal discomfort, cirrhosis after many years)
Term
WORMS-Tapeworms
Definition
(eating poorly cooked beef, pork, or fish that contain worm cysts) (bloating and abdominal discomfort; constipation or diarrhea)
Term
WORMS- Pinworms
Definition
(most common worm infestation in the US) (eggs spread to family members on hands and bed linens) (live in colon, females lay eggs on perianal skin while host sleeps, causing irritation and itching)
Term
WORMS- Hookworm
Definition
(eggs excreted in feces; larval worms burrow into the skin of barefoot and migrate to intestines) (food is blood) (heavy infestation cause anemia and fatigue) (now rare in US)
Term
WORMS- Ascaris
Definition
(10-12 in. long, live in small intestines) (large numbers of worms can cause intestinal obstruction) (eggs excreted in feces and are spread on hands or vegetation contamination by human feces)
Term
ARTHROPODS
Definition
vectors
multicellular animal that spreads disease; can live on the surface of the body; from infected host to an uninfected host, usually by biting, just carriers of the disease-causing microorganisms
Term
ARTHROPODS- Vectors
Definition
scabies mite
insects
mosquito
flea
lice
flies
ticks
Term
mosquito
Definition
malaria, West Nile virus, yellow fever, encephalitis
Term
flea
Definition
bubonic plague
Term
lice
Definition
typhus
Term
ticks
Definition
Lyme disease, Rocky Mountain Spotted Fever (rickettsial diseases)
Term
Virulence
Definition
the ability of the pathogen to cause a disease
Term
Resistance
Definition
the total body defenses against a pathogen
Term
Body’s defenses include:
Definition
skin, mucous membrane, cilia, adequate nutrition, immune response
Term
skin
Definition
(number 1 defense against microorganism; unbroken skin)
Term
mucous membrane
Definition
inside nose, mouth, rectum ( all create some sort of mucus) ( mucous membranes have heavy blood supplies beneath them)
Term
cilia
Definition
little hair-like structures in the respiratory tract
Term
adequate nutrition
Definition
someone who is not suffering from malnutrition or anorexia
Term
immune response
Definition
lymphocyte and macrophages (white blood cells) deals with infections
Term
Dose
Definition
amount or number of microorganisms needed to be present for an infection to occur
Term
Diagnosis
Definition
Identification
Term
Etiology
Definition
causative factors
(may be more than one of the following)
congenital defects
inherited disorders
microorganisms
Immunologic dysfunction
degenerative changes
nutritional deficiencies
malignancy , burns, or trauma
Term
Idiopathic
Definition
cause of disease is unknown
Term
Iatrogenic
Definition
procedure or error causing a disease
Term
Predisposing factors
Definition
the tendency to get the disease
Term
High Risk
Definition
tendencies to get disease
Term
Prevention
Definition
how to avoid getting disease
Term
Epidemiology
Definition
science of tracking a disease pattern or occurrence
Term
Incidence
Definition
new disease cases noted in a specific time frame
Term
Communicable
Definition
disease infections that spread from one person to another
Term
Epidemics
Definition
many cases in 1 area
Term
Pandemic
Definition
many cases in a large area (nationwide)
Term
Endemic
Definition
the usual number of cases in a certain area
Term
RESIDENT FLORA
Definition
microorganisms that live on us most of the time.
resident flora is found on our skin , in our mouth, intestinal, and vaginal area
not pathogenic under normal circumstances, but may cause a disease if transferred to another location in the body or if the body’s defenses are impaired
Term
skin normal flora
Definition
Staphylococcus aureus (number 1 claimed surgical site infection, from someone else resident flora, not their own staph
Term
colon and small intestine normal flora
Definition
Escherichia coli (E.coli) (number 1 nosocomial (health care related) infection)
Term
RESIDENT FLORA Benefits-
Definition
can prevent other invading organisms from developing a colony
assist with the digestion process
assist with the production of vitamin K, made in colon from resident flora
Term
TRANSIENT FLORA
Definition
periodically found in the body
Streptococcus pneumoniae - sometimes found in a person’s upper respiratory tract and usually causes no problem. May become pathogenic if host’s resistance is lowered
Term
Symbiosis
Definition
the relationship between 2 unrelated organisms that live close together -symbiotic
Term
Mutualism
Definition
2 organisms that benefit each other
Term
Commensalism
Definition
2 organisms - 1 organism is benefitting the other is neither benefited or harmed
Term
Parasitism
Definition
2 organisms -1 organism benefits and 1 organism is harmed
ex. - worm (feeding off the human, but the human is only being harmed in the process)
Term
Opportunistic infection
Definition
an infection caused by a microorganism that usually does not cause any problem but under certain circumstances will cause an infection, such as when a bodies defenses are down - examples-
yeast infections from using antibiotics
AIDS (Freddie Mercury)- susceptible to pneumonia, Kaposi's sarcoma - cancerous lesions of the skin because they have no defense
diabetes - any minor infection for a healthy person becomes heavy infection for a diabetic unhealthy person
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