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Microbiology Lab
N/A
61
Biology
Undergraduate 3
09/03/2014

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Term
BSL-1 organisms
Definition
Organisms do no typically cause disease in healthy
individuals and present a minimal threat to the environment
and lab personnel. Standard Microbiological practices are adequate. These microbes may be handled in the open, and no special containment equipment is required.
Term
Bright-field microscopy
Definition
transmits light up through a specimen
Aids in the identification of unknown microbes
May help identify more than one different type of microorganisms in a sample
Term
Base
Definition
stand which holds the microscope, contains the light
Term
Condenser
Definition
lens which concentrates the light unto the specimen
Term
Iris diaphragm
Definition
used to concentrate or disperse the light in the condenser
Term
Stage
Definition
holds the slide containing the specimen
Term
Objective lens
Definition
collects the light from the condenser and magnifies the image
Produces a magnified real image
Term
Ocular lens
Definition
located on top of the microscope and further magnifies the image 10X
Produces a virtual image that appears within the microscope
Term
Total magnification of a microscope is found by
Definition
multiplying the magnification on the objective lens by the magnification of the ocular lens (10X)
Term
Resolution
Definition
the clarity of an image
Term
Limit of resolution (resolving power) –
Definition
a measurement of how far apart two points must be to view two objects as separate
Term
D
Definition
the minimum distance at which 2 points can be resolved, always measured in wavelength (nm)
Term
λ
Definition
the wavelength of light hitting the specimen
Term
NA condenser and NA objectives
Definition
numerical apertures marked on the lenses
Term
Numerical aperture
Definition
a measure of a lens’ ability to transmit light coming from the specimen
Term
Numerical aperture is increased when
Definition
immersion oil is used, making the limit of resolution smaller or better
Term
The Winogradsky Column
Definition
A glass column filled with a mud sample and chemical compounds
Causes a gradient of oxygen, redox potentials, and nutrients to form allowing different species to inhabit different niches
This model mimics the environmental conditions of microbial populations in nature
Term
Autotrophs
Definition
utilize carbon dioxide as the sole carbon source. produces complex organic coumpounds (such as carbohydrates, lipids, and proteins) from CO2, generally using energy from light or inorganic chemical reactions

Less fastidious than the most nonfastidious heterotroph
Term
Heterotrophs
Definition
utilize reduced organic molecules as the sole carbon source. cannot fix carbon and uses organic carbon for growth
Term
Phototrophs
Definition
utilize light as their energy source
Term
Chemotrophs
Definition
oxidize organic or inorganic compounds as their energy source
Term
Lithotrophs
Definition
utilize reduced inorganic molecules as their electron acceptor
Term
Organotrophs
Definition
utilize organic molecules as their electron acceptor
Term
At the bottom of the column
Definition
Clostridium species ferment cellulose
Term
The fermentation products are utilized by
Definition
Desulfobivrio species which produce hydrogen sulfide
Term
Desulfobivrio species produce
Definition
hydrogen sulfide
Term
A hydrogen sulfide gradient is created which contains which photoautotrophs
Definition
Chlorobium (green) and Chromatium (purple)
Term
Where sulfur is low what color is present
Definition
the purple nonsulfur bacteria Rhodospirillum and
Rhodopseudomonas are located
Term
Near the top of the column,
oxygen and hydrogen sullfide are
present allowing for the growth
of
Definition
Beggiatoa and Thiothrix
Term
Nutrient Media
Definition
supplies basic nutritional requirements of commonly cultivated bacteria
Term
Undefined/Complex Media
Definition
used to grow bacteria whose nutrient requirements are unknown. rich in nutrients, useful for culturing the greatest variety of microbes
Term
Carbon
Definition
usually supplied in the form of meat (peptone) and plant extracts (phytone)
Term
Nitrogen
Definition
essential for the synthesis of amino
acids supplied through beef extract or peptones, Amino acids, purines, pyrimidines,
monosaccharides, polysaccharides and lipids
Term
Selective media
Definition
contains components that allow only certain bacteria to grow
Ex: antibiotics, dyes and inhibitory compounds
Term
Differential media
Definition
contains substances that cause some bacteria to appear in a way that allows you to tell them apart from other bacteria
Term
Mannitol-salt agar
Definition
contains high concentrations of salt to select for Staphylococcus
Term
EMB
Definition
selects for gram negative bacteria, does not allow gram positive bacteria to grow
Term
Liquid Broth Cultures
Definition
used to grow large amounts of bacteria
Various differential tests utilize liquid broth cultures
Fermentation, indole utilization, methyl red and Voges-Proskauer tests
Term
Agar
Definition
used to solidify liquid media, is not used as a nutrient source by bacteria
Term
Streak plates
Definition
allows for streaking of bacteria and selection of isolated
colonies, contains 1.5% agar
Term
Semi-soft media (deeps)
Definition
used for motility tests if added in low
concentration, contains 0.4% agar
Term
Slants
Definition
allows for long term storage, uses 1.5% agar
Term
Autoclave
Definition
a mechanism used to sterilize media
Heats media to 121° C for 15 minutes at 15 psi of steam preasure
Term
Filter sterilization –
Definition
any component that is heat
sensitive cannot be autoclaved and must pass
through a bacteriological filter
Ex: antibiotics, amino acids, vitamins
Term
mixed culture
Definition
a culture consisting of two or more species
Term
pure culture
Definition
a culture containing only a single species
Term
Streak Plate
Definition
a bacterial culture is streaked onto
a plate to decrease the cell density and obtain an
individual colony or colony-forming unit (CFU)
Term
Quadrant streaks are used for
Definition
cultures containing
a large number of cells
Term
Colonies
Definition
arise from one original cell type
Term
Colonies
Definition
arise from one original cell type
Term
Defined Media
Definition
the amount and identity of every ingredient is known, supports a narrower range of organisms
Term
Nonfastidious
Definition
a heterotroph that require little organic compounds from the environment
Term
Fastidious
Definition
a heterotroph that relies heavily on the environment to supply many required organic compounds (most pathogenic species)
Term
Most Staph. grow on what? and the color is changed or unchanged?
Definition
MSA but cannot ferment
mannitol, so they appear pink or red and the color of the medium is unchanged
Term
Staph. aureus is the only organism that does what? and what color does this result in?
Definition
ferments
mannitol causing the colonies and media to appear
bright yellow
Term
Mannitol Salt Agar (MSA)
Definition
Contains mannitol as the carbohydrate source
high salt concentration of 7.5%
pH indicator phenol red
Selective media since the high salt concentration dehydrates and lyses most bacteria except Staphylococcus
Differential media since microbes that can ferment mannitol will secrete acids that change the pH allowing the phenol
red to change color
Term
Spread plate method
Definition
Method of isolation where the microbial sample is diluted prior to plating and spread evenly over a plate with a glass or metal rod
A properly diluted sample will yield individual colonies to obtain a pure culture
Term
Eosin Methylene Blue Agar (EMB)
Definition
Contains peptone, lactose, sucrose, eosin Y and methylene blue dyes
Peptone – provides carbon and nitrogen
Selective Media
Lactose and sucrose – encourage growth of enteric (intestinal) bacteria and fermentation of these disaccharides changes the color of the media
Differential Media
The dyes (eosin Y and methylene blue) – inhibit the growth of Gram-positive organisms and react with lactose fermenters to aid in identifying bacteria
Term
Bacteria Effects on EMB- E.Coli
Definition
avid lactose fermenter,
the color of the colonies will appear dark purple or
black with a green, metallic sheen
Term
Bacteria Effects on EMB- Enterobacter or Klebsiella
Definition
less aggressive lactose
fermenter, colonies will appear pink to dark purple
Term
Bacteria Effects on EMB-Non-lactose fermenters or sucrose fermenters
Definition
colony color appears unchanged or the color of the
medium
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