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Microbiology Chapter 7 Nester
DNA to Protein
65
Biology
Undergraduate 2
02/12/2014

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Term
What is the process of copying DNA prior to cell replication
Definition
DNA Replication
Term
What serves as a template for DNA replication
Definition
Each of the original DNA strands
Term
What must occur for an organism to pass genetic information on to its offspring?
Definition
The parent must copy its own DNA and provide a copy on to his offspring
Term
What is the function of stabilizing proteins?
Definition
To hold the separated strands apart and prevent degradation
Term
The replication fork moves...
Definition
ahead of the newly synthesized DNA
Term
What is the role of DNA helicase in DNA replication?
Definition
To use the energy from ATP to break the hydrogen bonds and b/t the two DNA strands, thereby "Unzipping" the molecule
Term
The replication fork is:
Definition
The point where the DNA helicase is "unzipping" the double stranded DNA molecule
Term
What is a Base Pair?
Definition
They always occur in a certain order:
Adenine - Thymine
Cytosine - Guanine
Uracil - Found in RNA, it base-pairs with adenine and replaces thymine during DNA transcription.
Term
What is a gene?
Definition
A segment of DNA that encodes a functional product,usually a protein
Term
What are nucleotides?
Definition
The structural units of nucleic acids
(DNA and RNA)
Term
How many parts does a nucleotide have? What are they?
Definition
3

A nitrogen containing base
a pentose (5 carbon sugar) deoxyribose or ribose
a phosphate group (phosporic acid
Term
What are nitrogen-containing bases made up of?
Definition
Cyclic Compounds
Carbon, hydrogen, oxygen and nitrogen atoms

Adenine (A) Thymine (T)
Cytosine (C) and guanine (G)
Uracil (U)
Term
What is a DNA polymerase?
Definition
an enzyme that catalized the polymerization of deoxynucleotides into DNA
Term
What is a genome?
Definition
Complete set of genetic information in a cell or virus, often used interchangeably with chromosome. technically includes plasmids
Term
What is a chromosome?
Definition
Structure containing DNA that physically carries hereditary.
Term
Which enzyme can synthesize new strands of DNA
Definition
DNA polymerase
Term
Why is primase essential for DNA Replication?
Definition
It provides a 3' end of the newly synthesized strands, allowing DNA polymerase to begin coping DNA
Term
DNA synthesis occurs in what direction/
Definition
from 5' to 3' on both the leading and the lagging strands
Term
Central Dogma
Definition

The process of DNA making RNA (mRNA) which makes protein

 

 

Term
Replication
Definition

When DNA makes another copy of itself

 

Duplicates original molecule

Term
Transcription
Definition
Process of making RNA (mRNA) from DNA
Term
Translation
Definition
When protein is made from RNA (mRNA)
Term
Antiparallel Double Helix
Definition

When the 5' end of one strand pairs up with the 3' end of the other strand of DNA

 

One strand is "flipped upside down"

Term
5' Phosphate?
Definition
Phosphate group is attached to 5th carbon of the sugar in DNA
Term
3' Hydroxyl
Definition
Hydroxyl group (-OH) is attached to the 3rd carbon of the sugar in DNA
Term
Primer
Definition

A strand of nucleic acid that serves as a starting point for DNA replication

 

Where the existing 3' OH attached to existing nucleic acid polymer

Term
Bidirectional
Definition
In bacteria where DNA gets copied in both directions pulling both ends into another circle
Term
Leading Strand
Definition

The strand of DNA that able to replicate the DNA in a continuous fashion

 

Replicates in same direction as fork opens

 

3' to 5'

Term
Lagging Strand
Definition

Replicates in the opposite direction as fork opens

 

This strand replicates the DNA in fragments

 

5' to 3'

 

This strand has to be looped back on itself

Term
Okazaki Fragments
Definition
The short fragments of DNA made by the lagging strand in the 5' to 3' direction
Term
Helicase
Definition
Enzyme that opens up the two strands of DNA
Term
Promoter
Definition
A special DNA sequence that RNA polymerase tries to find in order to make RNA
Term
messenger RNA mRNA
Definition
encodes proteins, result of transcription of protein encoding gene
Term
ribosomal rRNA
Definition
does not encode proteins,result of transcription of rRNA gene
Term
transfer RNA tRNA
Definition
does not encode protein, result of transcription of tRNA gene
Term
how do cells change levels of protein production
Definition
mRNA is instable, it regulates the synthesis of MRNA
Term
what are primases
Definition
synthesize short stretches of RNA complementary to exposed DNA template (opened strand)
Term
what direction is RNA Primer & where does DNA polymerase continue the new strand from it
Definition
it is 5' to 3', so strand continues building from 3' end
Term
how do RNA primers work differently on leading vs lagging strand
Definition
leading - only needs one primer, starts building from its 3' end (with a 5' side that can keep going)
lagging - opens with 5' end, so has to keep finding 3' end to start from
Term
where does DNA polymerase work
Definition
only at 3' end of a primer (in replication)
Term
which strand generates okazaki fragments
Definition
lagging strand
Term
what characteristic of prokaryotic cells allows for bidirectional replication of dna
Definition
?
Term
transcription
Definition
synthesizing RNA from a DNA template (mRNA)
Term
translation
Definition
information encoded from mRNA "transcript" used to make protein
Term
how which direction does RNA polymerase work and does it need a primer?
Definition
can only add nucleotides to 3' end (like DNA p), so works from 3' end of other strand (which means new strand starts at 5')
DNA polymerase does needs a primer, RNA p does not
Term
when RNA transcribed which strand is - strand
Definition
the strand of DNA being copied
Term
how is nucleotide sequence for transcribed RNA compared to the DNA template (-)
Definition
complimentary pairs - except is RNA so has uracil instead of thymine (AT,GC but AU,GC in RNA)
Term
what are base pairs in dna
Definition
AT, GC (except AU in RNA - no thymine)
Term
RNA polymerase
Definition
enzyme that synthesizes RNA using single stranded DNA as template, synthesis occurs in 5' to 3' direction ( so reads 3' from DNA strand)
Term
sigma factors
Definition
part of RNA polymerase that recognizes the promoter (which is part of DNA strand where transcription initiates)
Term
how do cells transcribe specialized sets of genes as needed
Definition
by controlling which types of sigma factors are made
Term
what are 3 major structures involved in translation (protein synthesis)?
Definition
mRNA - information transcribing ribosomes - assembling the amino acids
tRNA - bring the amino acids to the ribosomes (which are recycled)
Term
how are amino acids delivered to ribosomes
Definition
tRNA has amino acid with anticodon sequence, is recognized & amino acid used by ribosome to make protein
Term
which direction do ribosomes work on mRNA
Definition
reads mRNA in the 5' to 3' direction
(opposite of polymerase)
Term
subunits of prokaryotic ribosomes
Definition
30S & 50S - but not additive (prokaryotic are 70 S)
Term
eukaryotic ribosomes
Definition
40S & 60S = 80 S
Term
why are differences in ribosomal structure between euks and prots medically significant?
Definition
certain antibiotics bind & inactivate 70S (proks) but not 80S (euks), explaining how antibiotics kill bacteria w/o harming mammalian cells
Term
which type - prok or euks - has introns that need to be removed
Definition
euks
Term
in which type is mRNA not pre-processed
Definition
proks
Term
in which type is translation of mRNA immediate after & concurrent w/ transcription
Definition
proks - in euks mRNA transcript is first transported out of nucleus and is translated in cytoplasm
Term
quorum sensing
Definition
ability of some organisms to "sense" the density of cells within their own population
Term
how does quorom sensing work
Definition
concentration of signalling molecules, can also work between species
Term
antigenic variation
Definition
pathogens stay one step ahead of body's defenses by altering the molecules the immune system has learned to recognize
Term
ex of natural selection/antigenic variation
Definition
Neisseria gonorrhoeae - shuffle their pilin genes which defeats the immune system, as those that switch off will multiply and survive
Term
DNA & RNA Polymerases which direction do they work, which way do Ribosomes work
Definition
they SYNTHESIZE 5' to 3'
(so they read 3' to 5')...Ribosomes READ 5' to 3'
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