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Microbiology Ch. 2
N/A
71
Biology
Undergraduate 2
09/10/2011

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Term
Atom
Definition
smallest component of a pure substance that exhibits physical and chemical properties of that substance. it cannot be subdivided into smaller substances w/out losing it's properties.
Term
Compound
Definition
2 different atoms together
Term
Valence
Definition
combing capacity. the # of extra or missing e- in its outermost e- shell
Term
Ionic bond
Definition
an attraction between ions of opposite charge that holds them together to form a stable molecule. one atom loses e- another gains e-
Term
Covalent bond
Definition
chemical bond formed by two atoms sharing one or more pairs of electrons. strong and more common than ionic bonds.
Term
Hydrogen bond
Definition
a hydrogen atom that is covalently bonded to one oxygen or nitrogen atom that is attracted to another O or N atom. bonds are weak, break easily, do not bind atoms into molecules but do serve as bridges.
Term
Endergonic reaction
Definition
a chemical reaction that absorbs more energy than it releases. energy is directed inward.
Term
Exergonic reaction
Definition
chemical reaction that releases more energy than it absorbs
energy is directed outward
Term
Synthesis reaction
Definition
when 2 or more atoms, ions, or molecules combine to form new and larger molecules. forms new bonds. endergonic. A+B=AB. anabolism
Term
Anabolism
Definition
pathways of synthesis reactions in living organisms. Ex: combing sugar molecules to form starch and or amino acids to for proteins.
Term
Decomposition reaction
Definition
the reverse of a synthesis reaction. bonds are broken. typically splits large molecules into smaller molecules, atoms, or ions. exergonic and catabolism. AB=A+B
Term
Catabolism
Definition
decomposition reactions that occur in living organisms. Ex: breakdown of sucrose into simpler sugars, glucose, fructose, during digestion
Term
Exchange reaction
Definition
part synthesis and part decomposistion. AB+CD=AD+BC. 1st bonds of A and B and C and D are broken in decomp reaction then new bonds are formed between A and D and B and C in synthesis process.
Term
Reversible Reaction
Definition
a chemical reaction that is readily reversible-when the end product can revert to original. indicated by 2 arrows. occur because neither reactants or products are stable others only occur under special conditions like heat and water.
Term
Substrate
Definition
any compound with which an enzyme reacts
Term
Product
Definition
what is formed when substrate and enzyme combine forms substrate complex which then turns into this
Term
Enzyme substrate complex
Definition
what is formed when substrate and enzyme combine. substrate+enzyme=esc=product+enzyme. this reaction is reversible
Term
Inorganic compounds
Definition
molecules, usually small and simple, which lack carbon and ionic bonds may play important role. includes: water, molecular oxygen(O2), CO2, salts, acids and bases.
Term
Organic compounds
Definition
always contain carbon and hydrogen and typically complex. mostly held together by covalent bonds.
Term
Water polarity
Definition
is reason why its abundant, great for life. is polar, strong attraction which means needs a lot of heat to break thus high boiling point. so mostly in liquid form. polarity of water makes it universal solvent. polarity also accounts for role as reactant or product and excellent temperature buffer.
Term
Polar molecule
Definition
any molecule that has an unequal distribution of charges. ex: water
Term
Solvent
Definition
dissolving medium
Term
Solute
Definition
dissolving substance
Term
Dissociation
Definition
separation
Term
Acid
Definition
a substance that dissociates into one or more hydrogen ions H+ and one or more negative ions. is a proton donor.
Term
Base
Definition
dissociates into one or more positive ions plus one or more negatively charged hydroxide ions OH- that accept or combing with protons. (proton acceptors)
Term
Salt
Definition
substance that dissociates in water into cations (+) and anions (-). neither is H+ or OH-
Term
pH scale
Definition
ranges from 0 to 14. expresses amount of H+ in solution. potential of H. acids are less than 7 and bases are more than 7. 7 is neutral
Term
pH buffers
Definition
compounds that help keep pH from changing drastically
Term
Carbon
Definition
up to 4 covalent bonds. chain of them in organic molecule is called carbon skeleton
Term
Functional goups
Definition
specific groups of atoms that are most commonly involved in chemical reactions and are responsible for most of the characteristic chemical properties and physical properties of organic compound. different groups show different properties which helps classify organic compounds.
Term
Monomers
Definition
a small molecule that collectively combines to for polymers
Term
Polymers
Definition
large molecules formed by covalent bonding of many repeating small molecules called monomers
Term
Macromolecules
Definition
small organic molecules combined to make large molecules.
Term
Dehydration synthesis
Definition
(condensation) a molecule of water is released
Term
Hydrolysis
Definition
the reverse of dehydration synthesis. a decomposistion reaction in which chemicals react with the H+ and OH- of H2O
Term
Carbohydrates
Definition
large and diverse group of organic compounds that includes sugars and starches. principal function is to fuel cell activities w/ready source of energy. made up of carbon, hydrogen, oxygen. formula is (CH20)n. n=there's 3 or more CH2O atoms. 3 classifications: mono, di, and poly saccharides
Term
Monosaccharide
Definition
simple sugars. contain 3-7 carbon atoms. indicated by prefix of name. Ex: glucose, hexase for energy
Term
Disaccharides
Definition
formed when two monosaccharides bond in a dehydration synthesis reaction. Ex: glucose+fructose=sucrose (table salt) and H20. Can be broken down by hydrolysis.
Term
Polysaccharides
Definition
consists of tens or hundreds of monosac. joined thru dehydratino synthesis reactions. are macromolecules. can be split into mone by hydrolysis. not soluble in water. Ex:glycogen, cellulose, chitin
Term
Glycogen
Definition
animals use for energy storage. short term energy
Term
Cellulose
Definition
cell wall
Term
Starch
Definition
plant energy storage
Term
Chitin
Definition
cell wall for animals (exoskeleton)
Term
Glycosidic bonds
Definition
bond between sugars
Term
Lipids
Definition
diverse, fats, nonpolar, provide structure of membranes and cell walls and energy storage. have C,H,O but not 2:1 H,O ratio like carbohydrates. not soluble in water but are in nonpolar solvents like either and chloroform. also used in hormones, vitamins and steroids.
Term
Simple lipids
Definition
called fats or triglycerides contain glycerol and fatty acids. molecule of fat is created when 1 glycerol combines with 1-3 fatty acids and 1-3 h2o is created
Term
Glycerol
Definition
has 3 carbons attached to 3 hydrogen groups
Term
Fatty acids
Definition
are long chains of C and H ending in Carboxyl group (COOH)
Term
Saturated
Definition
no double bonds
Term
Unsaturated
Definition
has double bonds
Term
Ester bonds
Definition
chemical bond formed where h2o molecules are removed in fats.
Term
Complex lipids (phospholipids)
Definition
contain phosphorous, nitrogen, and sulfur in addition to C,H,O. Ex:phospholipids. Build membranes essential to cells survival. Made up of glycerol, 2 fatty acids and in place of 3rd fatty acid is a phosphate group. have polar and nonpolar regions. polar=hydrophilic head. nonpolar=hydrophobic tail
Term
Steroids
Definition
have ring structures. Ex: cholesterol. separate fatty acid chains and prevents packing that would harden plasma membrane at low temperature.
Term
Proteins
Definition
organic molecules containing H,C,O,N some S. make up 50% or more of cells dry weight. Ex:enzymes-speed up reactions, transporter proteins, parts of cell structure, hormones, antibodies, toxins. DNA makes up function.
Term
Peptide bond
Definition
bonds between amino acids. bonds are between the COOH of one and NH2 of another. one h2o is released-dehydration synthesis.
Term
Amino acids
Definition
building blocks of protein. have at least 1 carboxyl group and one amino group attached to carbon and r-group. are 20 of them. different r groups makes up function of protein.
Term
Levels of protein structure
Definition
primary, secondary, tertiary, and quaternary.
Term
Primary structure
Definition
unique sequence in which amino acids are linked together to form polypeptide chain-is genetically determined (DNA)-r groups. each chain folds in specific ways which also determines function.
Term
Secondary structure
Definition
localized, repetitious, twisting or folding of polypepide chain. are 2 types. helices-spiral clockwise and pleated sheets-parallel portions of chain. both held by H bonds between O and N. how r groups fold in space
Term
Tertiary structure
Definition
overall 3rd structure of polypeptide chain. folding is not repetitive or predictable as in secondary. involves interactions between various amino acid side groups.
Term
Quaternary structure
Definition
consists of aggregation of 2 or more individual polypeptide chains (subunits) that operate as a single functional unit.
Term
Denaturation
Definition
if protein encounters hostile environment in terms of temperature, pH, or salt concentrations it unravels and loses its shape. protein is no longer functional
Term
Conjugated proteins
Definition
combination of amino acids with other organic or inorganic components. Ex:glycoproteins, neuroproteins.
Term
Nucleic Acids
Definition
first discovered in nuclei of cells. DNA, RNA, ATP. Watson and Crick. macromolecule consisting of nucleotides.
Term
Nucleotides
Definition
structural unit of nucleic acids. has 3 parts-a nitrogen containing base, a pentose (5 carbon) sugar which is either deoxyribose or ribose, and a phosphate group. the N bases are Adenine, Thymine, Cytosine, Guanine, and Uracil.
Term
Phosphodiester bonds
Definition
A bond between a two sugar groups and a phosphate group; such bonds form the sugar-phosphate-sugar backbone of DNA and RNA. A diester bond (between phosphoric acid and two sugar molecules) linking two nucleotides together to form the nucleotide polymers DNA and RNA.
Term
DNA (deoxyribnucliec acid)
Definition
substance of which genes are made. watson and crick w/franklin and wilkins came up with physical structure. Oswald Avery, Colin, Mccarty discovered double helix of it. has backbone consisting of alternating deoxyribose sugar and phosphate groups.
Term
Complementary bases in DNA
Definition
A pairs with T with 2 H bonds. G pairs with C by 3 H bonds.
Term
RNA (ribonucleic acid)
Definition
single strained. has 1 more oxygen than deoxyribose. 5 carbon sugar. has uracil instead of thymine. messenger RNA, ribosomal RNA, and transfer RNA-protein synthesis.
Term
ATP (adonsine tri phosphate)
Definition
energy carrying molecule of all cells and is indispensable to the life of cell. short term energy transfer (storage). provides energy for reactions that need it. adonsine-adenine and ribose. triphosphate-3 phosphate groups. does work for cell. triphosphoylated ribose nucleotide.
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