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Microbio LAB 3
lab 3-5
135
Microbiology
Undergraduate 3
02/23/2011

Additional Microbiology Flashcards

 


 

Cards

Term

 

 

thick slime layer of a bacteria is called what? 2

Definition
capsule or
glycocalyx
Term
Why are Special techniques have to be used to stain a capsule?
Definition
b/c capsule is damaged with heat fixxing,  capsules also repel most stains
Term

capsule staining begins with what? cells are spread in a film with what? and are not What?

 

 

what kind of dye are used for capsule staining?

 

what do they appear like on microscope?

Definition

capsule stain- negative stain

 

on acidic film-no heat fixing

 

indian dye

 

halo

 

afterwards. similar neg staining protocol

Term
resting stages of genera bacillus and clostridun, it's function
Definition
 resting stages called endospores when they exhaust essential
nutrients.
Term
what function does endospre serve
Definition

dorment stage of in bacterial help protect against enviromental conditions not suitable for growth

 

--> making stains hard to penetrate keratin of cell wall

 

Term
terminal
Definition
end of cell
Term
central
Definition
middle
Term
subterminal
Definition
b/w terminal and middle
Term
two different kinds of shapes
Definition
Spherical or elliptical (oval)
Term
method using to stain endospores
Definition


Schaeffer-Fulton

 

"futon shaver"

Term

stain used for endospore

 

stain used for vegetative portion of cell 

 

color of each

Definition

malachite green to stain
the endospore

 

safranin to stain the vegetative portion
 Endospores will be green
Vegetative cells and spore
mother cells will be pink

 

GIVES

Term
function of streak plate  method
Definition

 

isolate mixed colonies to produce COLONIES (one type of cell) or colony-forming unit (CFU)

 

mixed--> isolated

Term
2 types of streak methods
Definition

T-streak & quadrant streak

 

T quadrant

Term
function of streak plating
Definition
Purpose is to reduce the number of cells being spread with each successive series
of streaks thus diluting the concentration of cells.
Term
wat should we not do when preparing streaks
Definition
Do NOT Gouge the Agar!! Try to make all streaks as close as
possible
Term

 

 

lab 4 FLASHCARDS

Definition
Term
DEFINE AEROTOLERANCE
Definition
ABILITY TO LIVE WITH OXY PRESENT
Term
OBLIGATE AEROBES
Definition
REQUIRE HIGH O2
Term
AEROBES
Definition
REQ O2 - LOWER CONCEN
Term
MICROAERIPHILES
Definition
REQ REDUCED  O2
Term
MICROAEROPHILES
Definition
REQ REDUCED O2
Term
AEROTOLERANT ANAEROBES/ FACULATIVE ANAEROBES
Definition
DO NOT REQUIRE AND ARE NOT NEG AFFECTED BY O2
Term
AEROTOLERANT ANAEROBES
Definition

DO NOT REQUIRE O2

BUT DOES NOT MEAN IT IS HARMFUL EITHER

Term
FACULATIVIVE ANAEROBES
Definition
FLEXIBLE, NOT ADVERSELY AFFECTED BY O2
Term
OBLIGATE ANAEROBES
Definition
hates O2- DOES NOT WANT IT AT ALL
Term
WHERE DOES OBLIGATE GROW (STRICT)
Definition
TOPWHERE OXYGEN IN ABUNDANT
Term
FACULATIVE ANAEROBES
Definition
FLEXIBLE, GROWTH IS MORE RAPID WITH, BUT WILL DO WITHOUT
Term
Aerotolerant anaerobes
Definition


Grow equally well whether oxygen is present or not
 Do not require oxygen and are not adversely affected by it.

 

"IMMUNE"

Term

 

 

Microaerophiles

Definition

- Survive only in environments containing lower than atmospheric levels of oxygen.

 

- DESIRE SMALL AMOUNTS

Term
HABITAT OF Obligate (strict) anaerobes
Definition
DEEP MUD, LAKES,OCEANS AND SOILS
Term

WHAT FUNCTION DOES INOCULATING FLUID THIOGLUCOLLATE MEDIA DO?

 

what kind of agent is thio and why?

Definition

IT TEST FOR OXYGEN REQUIREMENTS OF AN ORG.

 

-SUPPORTS GROWTH OF BOTH AERIOBIC AND ANAEROBIC BACTERIA

 

thioglco- is a reducing agent which reduces oxygen to water

Term

WHAT IS THE DYE IN THIOGLYCOLLATE, WHAT FUNCTION DOES IT SERVE?

 

what color does it change, what does this represent

Definition

DYE: RESAZURIN- INDICATOR FOR OXYGEN --> BECOMES PINK

 

res-a-zur-in turns pink in the pressence of oxygen

Term
DYE RESAZURIN BECOMES W/ COLOR IN THE PRESENCE OF OXYGEN
Definition
Term
AFTER BOILING FTM BROTH AND IS PINK,(GETTING RID OF OXY) DEPENDING ON OXYGEN REQUIREMENTS WHERE WILL AEROBIC AND ANAEROBIC ORG BE LOCATED IN CONTAINER?
Definition

AEROBIC ORG- AT THE TOP

 

ANAEROBIC- BOTTOM

Term
FUNCTION OF ANAEROBIC JAR
Definition
CREATE A ANAEROBIC ENVIROMENT FOR THE CULTURE OF STRICT ANAEROBES
Term
WHAT IS USED TO CONVERT H2 AND 02 --> WATER IN ANAEROBIC JAR
Definition
PLADDIUM CATALYST
Term

KEY METABOLITES IN METABLOISM

 

2

Definition

ACETYL CoA

 

PYRUVIC ACID

Term
ARE METABLOITES LINEAR
Definition
NO SEVERAL DIFFERENT PRODUCTS FOR DURING REACTION
Term
PYRUVIC ACID IS FORMED IN WHICH PROCESS
Definition
GLYCOLYSIS (GLUCOSE)
Term
DEFINE FERMINTATION
Definition
process of deriving energy from the
oxidation of organic compounds, such as carbohydrates.
Term
Carbohydrate fermentation is the metabolic process by which
Definition

an organic molecule acts as an electron donor
(becoming oxidized) and one or more of its organic products
acts as the final electron acceptor.

 

OXYGEN IS NOT THE FINAL E- ACEPTOR

Term
PRODUCTS OF FERMENTATION
Definition
ACIDS AND ALCOHOL
Term
MICROORG PRESENT IN FERMEN
Definition
ANAEROBIC BACT/ EUKARYOTES/ YEASTS
Term
F OF GLUCOSE TEST
Definition
determine if an organism is able to ferment
glucose
Term
IF ORG ABLE TO FERMENT GLUCOSE W/ IS THE BYPRODUCT
Definition
acid will be produced and gas
may be produced.
Term
IF ACID IS INDEED FORMED IN GLUCOSE TEST WHAT COLOR WILL OF TUBE B AND WHY?
Definition

YELLOW-->PHENOL RED INDICATOR

positive fermentation of glucose

Term

IN METHY RED AND VOGES PROSKAUER TESTS

HOW MANY MEDIAS ARE YOU USING

Definition
1-SAME
Term
FUN OF METHYL RED TESTS
Definition
TEST FOR PRODUCTION OF MIXED ACIDS FROM GLUCOSE FERMENTATION
Term
HOW MANY DROPS OF METHYL RED INDICATOR ARE PLACED IN OVERNIGHT CULTURE
Definition
5-6
Term
RED COLOR MEANS
Definition
POSITVE ACID
Term
ORANGE
Definition
INCONCLUSIVE
Term
NO COLOR CHANGE
Definition
NEH RESULT
Term
F OF METHYL RED AGAIN
Definition
MIXED ACID FERMENTATION PRODUCT
Term
FUNCTION OF VOGUES MAGAZINE
Definition
to see if the organism
produces 2,3 butanediol instead of acids from glucose
fermentation
Term
THERE IS NO WAY TO DIRECTLY TEST FOR 2,3 BUTANEDIOL SO WHAT IS THE VOGUES REALLY TESTING FOR??
Definition
ACETONIN- PRECURSOR TO 2,3 BUTANEDIOL
Term
ACETONIN IMPORTANCE
Definition
no way to test the presence of 2,3 butanediol directly.
Therefore, the VP test is actually testing for the presence of
acetoin, which is a precursor of 2,3 butanediol
Term

AFTER ADDING BARRITS REAGENT a (ALPHA NAPTHOL) And BRB + KOH(s/p 3 days)

 

if reagents cause acetonin to oxidize to diacetyl which further reacts with guanidine nuclei from peptone what color will be produced?

Definition
red or pink, indicates a positive reaction for acetoin, which
tells you that the organism is a butanediol fermenter
Term
what does a positive reaction of acetoin indicate( red or pink)
Definition
org is a butanediol fermenter (remember can't direct test for this) GOal is this!
Term
recap: function of VP
Definition

Tests for the precusor of acetoin, which is a precursor of
2,3 butanediol fermentation product

Term
in respiration final electron acceptor is always....
Definition
inorganic molecule
Term
function of catalase
Definition

converts hydrogen peroxide into oxygen and wawter

 

h2o2--> h2 + o2

 

Mainly used to distinguish between staphylococcus and streptococcus**

Term
function of nitrate test
Definition
test for presence of enzyme nitrate reductase
Term
what is enzyme nitrate reductase
Definition

-produced by faculative bacteria to carry out anaerobic respitation

-enzyme catalyzes the transfer of electrons from
cytochrome b to nitrate reducing it to nitrite

Term
red or pink color change reprsents what for nitrate reduction
Definition
represents positive for indicating that org capable of anaerobic respiration
Term
function of nitrate reduction test
Definition
indicates org capable of anaerobic respiration
Term
if nitrate red test has no color change that means it's neg--> if you suspect this to be the case add some zinc dust if it turns red what does this represent
Definition

confirmed to be negative-

 

there is no color change
after adding the zinc, then this indicates that the nitrate was reduced a different nitrogenous compound, not nitrite

Term

define oxidation

 

define reduction

Definition
  • Oxidation is the loss of electrons

 

  • Reduction is the gain of electrons
Term
lab 5 flash cards
Definition
Term
function of media
Definition
to differentiate org based on ability to grow when esstential nutriens are limited
Term
function of citrate slant
Definition
some organisms can utilize citrate as ONLY carbon source
Term
function of CITRATE PERMEASE
Definition
enzyme some org that only use carbon to transport citrate into the cell producing pyruvate from it
Term
what is contained in medium for utilization test
Definition

medium contains:

 

- sodium nitrate--C source

- ammonium phosphate--N source

Term
what is the indicator dye used for citrate test
Definition
bromthymol blue due - indicator
Term
as the pH increase medium color changes to what
Definition
green-----> Blue
Term
bacteria using citrate and survive in media convert ______ into ____ and ____ ____ causing media to become more ____
Definition

ammonium phsphate into ammonia and ammonium hydroxide, alkaline

 

bacteria using citrate and survive in media convert ammonium phosphate into ammonia and ammonium hydroxyde causing media to become more alkaline

Term

Blue color represents

 

green color change

 

can organism use citrate as sole source of carbon

Definition

blue-- org uses citrate as sole Carbon source

 

green- NO media stay green

Term
function of hydrolytic enzymes
Definition
perform hydrolytic reactions - using water to split compelx molecules
Term
intraceulluar vs exoenzymes
Definition

intracellular enzymes- catalyze the reaction inside the cell

 

exoenzymes- secreed from the cell to catalyze the reactions outside the cell

Term
3 different test for hydrolytic exoenzymes
Definition

1. starch hydrolysis

2. casease

3. gelatinase

Term
test for intracellular enzyme
Definition

urease

 

 

urine comes from the inside

Term
2 glucose subunits
Definition

 amylose (linear) -losing streak


amylopectin (branched)- birds peck on trees with variety of directions

 

 

alpha-amylase and


oligo 1,6-glucosidase

Term
what are we using to test wheather an org can produce alpha-amylase and oligo 1,6 glucosidase?
Definition
Starch agar- simple plated medium of beef extract soluble starch, and agar
Term
if test proves positive for alpha amylase/ or oligo what does this mena
Definition
will hydrolyze starch
Term
indicator for starch
Definition
iodine- turns blue with positive starch
Term
when starch indicator reacts with starch the media should change what color?
Definition
dark brownish color
Term
for a positive result of exoenzymes what should petri look like?
Definition
clear zone around bacteria
Term
negative result
Definition
no clear zone
Term
when do you add iodine to starch hydrolysis ( testing for exoenzymes)
Definition
24 hours
Term
function of urease enzyme
Definition
hydrolyzes urea into ammonia and CO2
Term
what will be using to determine urease prod
Definition
urea broth
Term
what is the ingrediants of urea broth
Definition

- yease extract and urea

- has phenol red as pH indicator***

 

Term
what is the pH indicator in urea broth
Definition
phenol red
Term
if org grown in urea broth is urease,  pH and color is effected how?
Definition
ph will increase, phenol red will change to yellow to red to PINK
Term
how long does urease phenol red take to complete
Definition
8 days
Term
 function of casein hydrolysis test
Definition
to test if bacteria requires protein as a source of amino acid.
Term
function of CASEASE enzyme??
Definition
breakes down large proteins into subunits that can be brough into the cell
Term

for casein hydrolysis test how do you interpret result??

 

pos

neg

Definition

positive- clear zone

negative result- no clear zone

Term
gelainase test function
Definition
test to see if organism has enzyme that allows some organisms to hydrolyze gelatin
Term
gelatin
Definition
Gelatin is a protein derived from collagen – a component of
vertebrate connective tissue.
Term
what is a important step in gelatinase test
Definition
Chill media for (4°C) ~30 mins before looking at results.
Term
positve or neg result of gelatinase test
Definition

positive- gel liquid

negative- solid gel

Term
Starch Hydrolysis:
 Polysaccharide catabolism, exoenzyme catalyzed
Casein Hydrolysis:
 Polypeptide catabolism, exoenzyme catalyzed
 Urea Hydrolysis:
 Protein catabolism, intracellular enzyme catalyzed
 Gelatin Hydrolysis:
 Polysaccharide catabolism, exoenzyme catalyzed
Definition
Term
function of combination differential media
Definition

- combination differential media combine compoenents of several compatible tests into one med

 

- include core test to differentiate members of specific bacterial group

 

- can be used as a follow up to selective media

Term
function of SIM, what does it stand for
Definition

sem-solid media

 

tests: sulfur reduction/ indole prod from tryptophan/ motility

Term
sulfur reaction: function of cysteine desulfurase/ thisulfate reductase
Definition
bacteria can reduce sulfur to hydrogen sulfide using either of 2 enzymes both produce hydrogen sulfide gas
Term
If the organism can reduce sulfur___will be seen
in the tube.
Definition
, a black color
Term

indole production:

 

function of tryptophanase

 

(4)

Definition
bacteria that produces enzyme hydrolyze trypophan to pyruvate, ammonia, and indole
Term
how to tet for indole production
Definition
kovak's reagent is used on an inoculated, incubated culture
Term
kovac's reagent will react with indole to produce what?
Definition
red color
Term
what indicates a positive result for enzyme tryptophanase?
Definition

red color

 

brown means neg

Term
motility 3rd test function
Definition
stabbing technique is used, if cloudiness is seen in the media away from stab line, motility is indicated
Term
you want to maintain the needle how during sim motility test
Definition
straight
Term
what does the SIM motility resemble
Definition
gelain media
Term
how far in do you want to in, what position do you want to keep the
Definition

 

~2/3, upward

Term

TSIA - tripple sugar iron agar

3 tests it provides

Definition

sugar utilization

gas production

hydrogen sulfide production

Term
3 sugars agar contains
Definition
lactose, sucrose, glucose small amt
Term
what is the indicator for TSIA
Definition
phenol red
Term
what indicates ferrous sulfate
Definition

hydrogen sulfide

 

no color change- no sugars fermented

Term
page 25
Definition
Term
chapter 1
Definition
Term

Fastidious heterotrophs


Nonfastidious heterotrophs

Definition

Fastidious heterotrophs – rely heavily on the environment to supply ready-made organic compounds

 


Nonfastidious heterotrophs – do not rely as heavily on
environment. Can make some of their own compounds.
     ex. Autotrophs are less fastidious than the most nonfastidious heterotrophs.

Term
Never use what with oil immersion??
Definition
Never use the coarse adjustment with the oil immersion lens!
Term
total magnification =
Definition
Total magnification = Magnification of Objective X Magnification Of Ocular
Term
LAB 2
Definition
Term
[image]pellicle coat
Definition

• some float on top of medium and produce a type of surface membrane
Term
sediment
Definition

• sink to bottom
Term
Uniform fine turbidity (UFT)
Definition
?? look up
Term
flocculent
Definition
clumping growth
Term
describe bacteria
Definition

Bacteria are:

 

Simple
 Lack a nuclear membrane

 

 Have circular DNA

 

Cell surrounded by peptidoglycan

Term
Spirillum (spirilli
Definition
a rigid curved or spiral shaped cylinder
Term
vibrio
Definition

Gently curved rods

 

part of spirilli

Term

spirochetes

 

part of spirilli

Definition
Slender flexible spirals are called spirochete (spirochetes) which is greek
for coil of long hair
Term
gram positive
Definition

Gram positive (+) cells have a thicker peptidoglycan
layer.

 

retain the primary stain of crystal
violet because they have a thick outer layer of peptidoglycan
that traps the dye among its high degree of teichoic acid
crosslinks.

 

purple

pos dark

counter-intuitive

Term

crystal violet

water

iodine

ethanol

safranin

Definition
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