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micro and infectious diseases
exam 2 chap 7-13
108
Biology
Undergraduate 4
02/07/2013

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Term
double helix(4 components)
Definition
nucleotide
deoxyribose sugar
phosphate
pyrimidine or purine base
Term
describe a double helix strand(2)
Definition
sugars and phosphates held by covalent bonds
bases point outward
Term
nitrogenous bases are?
Definition
complementary
Term
adenine bonds to?
Definition
thymine, uracil for RNA
Term
guanine binds to?
Definition
cytosine
Term
ribose is a? and is used by?(2)
Definition
five-carbon sugar(aka pentose)
used by RNA
Term
deoxyribose is a? and is used by?(2)
Definition
five-carbon sugar(aka pentose)
used by DNA
Term
how many rings do purines have?
Definition
2
Term
how many rings do pyrimidines have?
Definition
1
Term
what do purines and pyrimidines do?
Definition
determine the nucleotide
Term
the end of a pentose chain in a single stranded DNA is called the ? prime end or the ? prime end
Definition
5-prime
3-prime
Term
in complementary base pairing, pyrimidines bind to?
Definition
purines
Term
how many hydrogen bonds do thymine and adenine use?
Definition
2
Term
how many hydrogen bonds do cytosine and guanine use?
Definition
3
Term
define an antiparallel strand(3)
Definition
5-prime and 3-prime end
run in opposite directions
ladder like structure
Term
DNA twists into a ?, which twists into a ? to take up less space
Definition
helix
supercoil
Term
what is DNA like in bacteria?(2)
Definition
ends are connected
one circular chromosome
Term
what group of enzymes is involved in dna replication?
Definition
dna polymerase complex
Term
what are the 3 steps of a replication fork?
Definition
replication proceeds in both directions
one strand rep continuously, one discont
when they meet, rep is done
Term
define semiconservative replication
Definition
two chromosomes, one old one new
Term
DNA is used to make ? which is used to make ?
Definition
rna
proteins
Term
what is transcription?
Definition
making rna from dna
dna>rna
Term
what is translation?
Definition
making protein from mrna
dna>rna>protein
uses trna and ribosomes
Term
what does messenger rna do?
Definition
forms exact copy of dna
Term
what does ribosomal rna do?
Definition
helps form ribosomes
Term
what does transfer rna do?
Definition
brings amino acids to ribosome
Term
what enzyme makes a new mrna from dna?
Definition
rna polymerase
Term
what are the 3 transcription process steps?
Definition
initiation
elongation
termination
Term
define initiation
Definition
rna polymerase binds to regulatory region and makes rna
Term
define elongation
Definition
rna polymerase moves down dna strand, adding rna to make mrna complementary
Term
define termination
Definition
rna polymerase comes to end of gene, hits stop codon and falls off
Term
what are proteins made of?
Definition
20 different amino acids
Term
what is gene expression?
Definition
making rna and proteins
Term
what are the 3 stop codons?
Definition
uaa, uag, uga
Term
what is the start codon?
Definition
aug
Term
what type of bond is formed between two codons in trna?
Definition
peptide bond
Term
what 2 things does the peptide site hold?
Definition
first trna
anticodon thats bound to the mrna codon
Term
what does the acceptor site do?
Definition
accepts incoming trna
Term
in which step do antibiotics inhibit bacteria?
Definition
translation
Term
why cant eukaryotic cells transcribe and translate at the same time?
Definition
their mrna contains introns
Term
why does a cell have 20 different trnas?
Definition
for each of the 20 amino acids
Term
what is a promoter region?
Definition
where the genes for all the enzymes of one pathway are grouped
Term
what is an operon?
Definition
when all genes are turned on and off together to save energy
Term
what does a polycistronic rna do?
Definition
codes for more than one protein on one mrna
Term
what is an rna that codes for one protein?
Definition
cistron
Term
what is a repressor? what does it turn off?
Definition
end product of a pathway
turns off transcription
Term
what is feedback inhibition?
Definition
the inhibitor turns off the first enzyme in the pathway
Term
what is an inducer?
Definition
the nutrient that needs to be metabolized
Term
define inducible
Definition
enzymes that are normally off but can be turned on
Term
define constitutive
Definition
enzymes that are always on
Term
what is signal transduction?
Definition
when an external signal is sensed by bacteria
Term
what is quorum sensing?
Definition
when cells in a population of bacteria coordinate the metabolism of the group
Term
what is genomics?
Definition
study of the dna sequence of an organism
Term
what is a genotype?
Definition
the sum of all structural and regulatory genes
Term
what is a phenotype?
Definition
the expressed characteristics of the cell
Term
what is a wild-type cell?
Definition
the non-mutated gene or cell
Term
what are the 3 types of mutations?
Definition
base substitutions
deletions
additions
Term
when does base substitution occur?
Definition
replication
Term
base addition or deletion, aka?
Definition
frame-shift mutations
Term
what does a mutagen do?
Definition
increases rate of spontaneous mutation by damaging the dna
Term
what type of mutagen does ultraviolet radiation cause?
Definition
thymine dimers
Term
what 2 types of enzymes repair mutations?
Definition
proofreading and mismatch
Term
when might a mutation have little or no effect on the cell?
Definition
at the end of the gene
Term
when might a mutation have a large effect on the cell?
Definition
when the whole gene is changed
Term
what is a plasmid?
Definition
small circles of dna outside the chromosome that can insert themselves into it
Term
what is recombination?
Definition
insertion of new, functional dna into a cells chromosome
Term
what is transformation?
Definition
dna integrated into genome
Term
what is transduction?
Definition
bacterial viruses transfer dna to newly infected bacterial cells
Term
what is conjugation?
Definition
bacterial cells transfer dna through a pilus if they are touching
Term
what type of enzyme does cloning use?
Definition
restriction endonuclease
Term
who discovered the polymerase chain reaction?
Definition
kary mullis in 1995
Term
what is identification?
Definition
characterizing
Term
what is classification?
Definition
arranging into groups
Term
what is nomenclature?
Definition
naming
Term
what is phylogeny?
Definition
the evolutionary origin of bacteria
Term
what is the most accurate way to classify microorganisms?
Definition
taxonomy
Term
when was our current way of classifying bacteria discovered?
Definition
1970
Term
is microbial classification still being done or is it all finished?
Definition
still being finished
Term
what are some sources to look up the taxonomy of microorganisms?
Definition
bergys manual
centers for disease control and prevention in georgia
Term
what is diagnostic bacteriology?
Definition
identifying pathogenic bacteria from a patient specimen
Term
what are the 3 bacterial diagnostic tests?
Definition
direct specimen-stains
pure culture-primary media
biochemical-using enzymes
Term
what are the 2 types of serologic tests?
Definition
fluorescent antibody reagents
particle agglutination
Term
what are the 4 molecular diagnostic tests?
Definition
dna fingerprinting
dna,rna,pcr probes
rna sequencing
strain typing
Term
what is a virion?
Definition
single viral particle
Term
what does a virion consist of?
Definition
nucleic acid surrounded by a capsid
Term
what is a capsid?
Definition
a protein coat
Term
what is a nucleocapsid?
Definition
a nucleic acid and a capsid
Term
can a viral nucleic acid be both a dna and rna?
Definition
no
Term
what are capsomeres?
Definition
protein subunits that make up a capsid
Term
what is the most common capsid structure?
Definition
ocosahedron, 20 faces
Term
what 3 shapes can a ocosahedron have?
Definition
polyhedral
helical
complex
Term
what is an envelope?
Definition
the outer membrane of a virus
Term
what do protein spikes do?
Definition
attach to receptors on host and allow for infection
Term
are viruses alive?
Definition
no
Term
how is an enteric virus spread?
Definition
fecal-oral route
infects gi tract
Term
what is a zoonotic virus?
Definition
animal virus that infects humans
Term
what is an arbovirus?
Definition
insect virus that infects humans
Term
what is balanced pathogenicity?
Definition
when the virus and host live in a good relationship
Term
what is a productive viral infection?
Definition
immediate invasion,replication and death of host cell
Term
what is a latent infection?
Definition
virus integrates chromosome into host and waits to be activated
Term
what is a persistent infection?
Definition
slow replication, do not kill host immediately
Term
what is a prion?
Definition
infectious agent that associates with protein sequences but not nucleic acids
Term
why is HIV a retrovirus?
Definition
converts rna back to dna using reverse transcripterase
Term
what is an oncogene?
Definition
uncontrolled growth of cells
Term
what percent of human tumors are caused by viruses?
Definition
20
Term
what do genetic shifts produce?
Definition
pandemics
Term
what is the cytopathic effect?
Definition
when a cell is infected by a virus and looks different due to changes on its surface
Term
what is serology?
Definition
observing a patients immune response to find a viral disease-pos=has antibody
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