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Micro 3
test 3
111
Biology
Undergraduate 2
11/09/2006

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Term
what type of organism makes up the most biomass of soil?
Definition
fungi
Term
what order of magnitude expresses the number of bacteria per gram of typical garden soil?
Definition
100,000,000 (108)
Term
what filamentous pathogen is very common in soil and form fungus like colonies?
Definition
Actinomyces
Term
What general characteristic do most pathogenic soil bacteria possess?
Definition
spore forming
Term
what soil pathogen can be taken up by grazing livestock and has spores that can survive decades?
Definition
Bacillus anthracis
Term
what fairly common soil organism is especially dangerous if the spores get deep in a wound?
Definition
Clostridium tetani
Term
what common soil organism is a concern with crops such as potatoes, carrots, onions, etc? what is the nickname?
Definition
Clostridium botulinum
C-Bot
Term
what soil pathogen causes gas gangrene?
Definition
Clostridium perfringens
Term
what type of patients is Clostridium perfringens usually seen in?
Definition
military wounds, farmers, diabetics
Term
what gr(-), rod-shaped plant pathogen is closely related to E.coli?
Definition
Erwinia
Term
what soil bacteria used to make insect larvicide?
Definition
Bacillus thuringiensis
Term
what is the chemical process of ammonification?
Definition
proteins - amino acids - amine group (NH2) - NH3(gas) - NH4OH (w/water) - NH4 ion and OH ion
Term
what happens the NH3 in a dry environment?
Definition
it dissipates into the atmosphere
Term
what happens to NH3 when water is present?
Definition
reacts with water to form NH4OH(base) which seperates into NH4+ and OH-
Term
what chemical process occurs in nitrificiation?
Definition
OXIDATION:
NH4+ to NO2- to NO3-
(ammonium ion to nitrate to nitrite)
Term
what chemical process occurs in denitrification?
Definition
REDUCTION:
NO3- to NO2- to N2O to N2
(nitrate to nitrite to nitrous oxide to atmospheric nitrogen)
Term
what chemical process occurs in nitrogen fixation?
Definition
N2 to NH3
Term
what are the steps of the nitrogen cycle?
Definition
1. ammonification
2. nitrification
3. denitrification
4.nitrogen fixation
Term
what step in the nitrogen cycle results in nitrogen form usable by plants?
Definition
nitrification
Term
what steps in nitrogen cycle results in loss of nitrogen from the soil?
Definition
ammonification if no water present
denitrification
Term
what condition results in heavy denitrification?
Definition
water logged soils
Term
what organism oxidizes ammonium ion? what step?
Definition
Nitrosomonas - nitrification
Term
what organism oxidizes nitrite? what step?
Definition
Nitrobacter
nitrification
Term
what enzyme involved in nitrogen fixation?
Definition
nitrogenase
Term
what are the non-symbiotic nitrogen fixing bacteria? what are the oxygen requirements?
Definition
Azotobacter - strict aerobe
Clostridium - strict anaerobe
Enterobacter - facultative anaerobe
Anabaena - aerobe?
Term
how is Azotobacter able to use nitrogenase?
Definition
metabolism is so fast and oxygen used so quickly and efficientyl that tiny anaerobic environment created
Term
how is Anabaena able to use nitrogenase?
Definition
heterocysts provide anaerobic vessel for nitrogenase
Term
what are the symbiotic nitrogen fixing organisms?
Definition
Rhizobium
Bradyrhizobium
Mycorrhizae
Term
what is an infection thread?
Definition
structure created by plant in response to Rhizobium of Bradyrhizobium on root hair
Term
what is the process of nodule formation?
Definition
1.bact on root hair
2.infection thread formed
3.bact moves along thread
4.infected cell grows large, bact multiply inside
5.bact changes to bacteroid
6.plant quarantines infected area by creating nodule
Term
what does mycorrhizae do for plant?
Definition
vastly increases surface area
increases Phosphorus uptake
Term
what are the 3 main areas of food microbiology?
Definition
pathogens
spoilage
fermentations
Term
what is the difference between a food infection and a food intoxication?
Definition
infection - MO multiplies in GI system
intoxication - sickness due to toxin produced by MO
Term
what would be the biggest clue to determining food infection or food intoxication?
Definition
onset of symptoms
delayed-infection
sudden-intoxication
Term
name two bacteria that cause food infections?
Definition
E.coli and Salmonella
Term
name two organisms that cause food intoxications?
Definition
C.botulinum and Staphylococcus aureus
Term
what toxin is produced by Staph.aureus? what is unique about it?
Definition
Enterotoxin
heat stable, survives cooking
Term
what type of toxin produced by C-bot? what does it bind with?
Definition
neurotoxin
binds with neuromuscular junction
Term
what toxin associated with E.coli?
Definition
Shiga toxin
Term
what strain of E.coli associated with food infection?
Definition
E.coli 0157:H7
Term
how does e.coli acquire shiga toxin?
Definition
through gene transfer from Shigella
Term
what does e.coli/shiga toxin cause? what types of symptoms?
Definition
hemolytic uremic syndrome
blood in urine, kidney shutdown leading to other organ failures
Term
what is transovarian infection in the context of salmonella?
Definition
hen contaminates egg across ovarian wall before the shell is made
Term
what symptoms does Salmonella infection have?
Definition
standard gastro-intestinal (GI) symptoms
Term
how is hepatitis A transmitted?
Definition
food and water
Term
why is hepatitis A a major public health concern?
Definition
it is shed in urine and feces and is chlorine resistant
Term
what types of food are at highest risk for carrying hepatitis A?
Definition
uncooked foods - salads, garnishes, etc.
Term
when do initial signs of hepatitis A emerge?
Definition
2 days to 6 weeks
Term
what does hepatitis A do in the body?
Definition
multiplies in gut, spreads to other organ systems, makes you sick for several months
Term
what are the long term consequences of hepatits A?
Definition
there are generally no long term consequences
Term
what is required for alcohol fermentation?
Definition
a carbohydrate source and fermenting organism
Term
what is MUST in wine fermentation?
Definition
crushed grape products including grapes, stems, skins, etc.
Term
what organism is added to the must in wine fermentation?
Definition
Saccharomyces cervisae
Term
what 2 factors limit the alcohol content of wine? what is the upper limit?
Definition
1.amount of natural sugars
2.alcohol tolerance of bacteria
12-14%
Term
what is the flavor of red wine attributed to?
Definition
1.tannins
2.anthocyanins
3.oak cast
Term
how long is red wine aged in the cask? in the bottle?
Definition
cask- 3-5 yrs
bottle- 5-15+ yrs
Term
how long is white wine aged in cask? in bottle?
Definition
not aged in cask
bottle- 2-3 yrs.
Term
how are bubbles put in champagne?
Definition
secondary fermentation in bottle produces CO2 after the addition of sugar
Term
how are fortified wines made? what are 2 examples?
Definition
extra alcohol added after fermentation
sherry and port
Term
what does vinegar mean in french?
Definition
sour wine
Term
what are the 2 genera that are used in vinegar production?
Definition
Acetobacter and Gluconobacter
Term
what bacteria used in wine making?
Definition
NONE - yeast used (fungi)
Term
is wine fermentation aerobic or anaerobic? vinegar making?
Definition
wine - ??
vinegar - aerobic
Term
what do wine spoiling bacteria convert alcohol to?
Definition
acetic acid
Term
what is the study of wine-making called?
Definition
enology
Term
what organism causes bacillary dysentery?
Definition
Shigella
Term
what shape and gram stain is shigella?
Definition
gr(-) rod - like e.coli
Term
what is lining of the small intestine called?
Definition
intestinal mucosa
Term
what type of pathogen is shigella?
Definition
water pathogen
Term
what is a sign of shigella infection?
Definition
bloody diarhea
Term
what type of pathogen is salmonella?
Definition
food and water pathogen
Term
what shape and gram stain is salmonella?
Definition
gr(-) rod
Term
what is a systemic infection?
Definition
an infection that has entered the bloodstream
Term
what water pathogen can cause a systemic infection?
Definition
typhoid causing salmonella
Term
what genus of bacteria causes typhoid?
Definition
salmonella
Term
what are the symptoms of typhoid?
Definition
fever, severe headache, dehydration, life threatening diarhea at about 10 days
Term
what protozoan causes extremely foul farts?
Definition
Giardia lamblia
Term
what is the feeding form of Giardia?
Definition
trophozoite
Term
what organism endemic to northeastern PA is resistant to boiling, iodine, and chlorine?
Definition
Giardia lamblia
Term
what water pathogen can survive in salty waters?
Definition
hepatitis A
Term
what water pathogen is commonly found in uncooked seafood?
Definition
hepatitis A
Term
what is a coliform bacteria?
Definition
gr(-) non sporeforming bacteria that ferments lactose into gas
Term
what is usually the primary test for coliforms in water?
Definition
gas produced in lactose broth
Term
what is the confirming test for e.coli in water?
Definition
metallic shiny growth on EMB agar
Term
what is the goal of sewage treatment?
Definition
remove inorganic pollution and reduce as much organic material as possible to CO2 and H2 before re-introducing to water system
Term
what are the three main constituents of sewage?
Definition
1.household waste
2.industrial waste
3.runoff
Term
what percentage of sewage is solid/particulate matter?
Definition
0.03%
Term
what 3 things are done in the primary treatment of sewage?
Definition
1.screening
2.skimming (for oils)
3.grinding/agitating
Term
why is sewage agitated in primary treatment?
Definition
to keep things in solution, reduce settling
Term
what is added in FLOC stage of sewage treatment to increase the rate of settling?
Definition
alum
Term
what is the role of alum in sewage treatment?
Definition
binds with small particles and bacteria/MOs making them settle faster
Term
what is sewage seperated into during FLOC?
Definition
SLUDGE (solid precipitate) and EFFLUENT (liquid)
Term
what types of organic molecules might be in sewage effluent?
Definition
carbohydrates, proteins, salts, polar fats, anything that is water soluble
Term
what is the goal of secondary sewage treatment
Definition
increase oxygen (decrease BOD)
Term
what does BOD stand for?
Definition
biological oxygen demand
Term
what is the result of elevated oxygen levels in effluent sewage?
Definition
increased MO activity, increased breakdown of organics
Term
what is a trickling filter?
Definition
large concrete tank filled with rocks coated in MOs
Term
what genus of sheathed bacteria is often responsible for clogging trickiling filters? what else also responsible?
Definition
Sphaerotilus
algae
Term
how does an activated sludge system work?
Definition
oxygen bubbled up from bottom of tank, sent to settling tank
Term
what does adding oxygen do to the BOD?
Definition
lowers BOD
Term
what is the last treatment of effluent before being put back in waterways?
Definition
chlorinated to kill MOs
Term
what type of bacteria used to break down organics in sludge?
Definition
anaerobic
Term
what are the byroducts of organic breakdown in spudge?
Definition
CH4, small amounts of CO2 and H2
Term
what is done with sludge after microbial treatment?
Definition
may be spread on reed bed or dried on drying beds
Term
what is done with dried sludge?
Definition
burned, buried, or sold as fertilizer
Term
what are the four parts surrounding carbon in amino acid structure?
Definition
carboxylic acid, hydrogen, NH2(amine group), and functional group
Term
what food pathogen can cause sickness after the cooking process? how?
Definition
Staphylococcus aureus
enterotoxin is heat stable
Term
what pathogens are chlorine resistant?
Definition
hepatitis A
Giardia lamblia
Term
what pathogens associated with a fecal-orla transmission?
Definition
E.coli
Salmonella
Hepatitis A
Term
what pathogen associated with uncooked foods?
Definition
Hepatitis A
Term
what pathogen associated with pre-prepared foods?
Definition
Staphylococcus aureus
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