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MICR33
Chapter 5- Part 1
53
Microbiology
Not Applicable
06/27/2012

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Term
Metabolism
Definition
The sum of the chemical reactions in an organism.
Term
Catabolism
Definition
Provides energy (energy releasing) and building blocks for anabolism
Term
Anabolism
Definition
Uses energy and building blocks to build large molecules.
Term
Metabolic pathway
Definition
A sequence of enzymatically catalyzed chemical reactions in a cell. Metabolic pathways are determines by genes.
Term
Enzymes are encoded by
Definition
Genes
Term
Collision theory
Definition
States that chemical rxns can occur when atoms, ions, and molecules collide
Term
Activation energy
Definition
Needed to disrupt electronic configuration
Term
Reaction rate
Definition
Frequency of collisions with enough energy to bring about a rxn. Can be increased by enzymes or increasing temp or pressure.
Term
Biological catalysts
Definition
Specific for a chemical rxn, not used up in that rxn.
Term
Chemical rxn
Definition
Breaking/making bonds
Term
Apoenzyme
Definition
Protein
Term
Cofactors
Definition
Non protein component. Can be organic/inorganic
Term
Coenzyme
Definition
Organic cofactor
Term
Holoenzyme
Definition
Apoenzyme cofactor
Term
Important coenzymes
Definition
NAD /NADH
NADP /NADPH
FAD /FADH2
Coenzyme A
Term
Enzyme turnover #
Definition
1-10,000 molecules per second
Term
Enzyme Classification:
Oxidoreductase
Definition
Oxidation-reduction rxns
Term
Enzyme Classification:
Transferase
Definition
Transfer functional groups
Term
Enzyme Classification:
Hydrolase
Definition
Hydrolysis
Term
Enzyme Classification:
Lyase
Definition
Removal of atoms without hydrolysis
Term
Enzyme Classification:
Isomerase
Definition
Rearrangement of atoms
Term
Enzyme Classification:
Ligase
Definition
Joining of molecules, uses ATP
Term
Factors influencing enzyme activity
Definition
Temperature
pH
Substrate concentration
Inhibitors
Term
Temperature and pH
Definition
Can denature proteins. They unravel the structures until primary structure-polypeptide chains
Term
Enzyme inhibitors:
Competitive inhibition
Definition
Blocks active site from substrate
Term
Human ideal pH
Definition
7.3-7.4
Term
Substrate concentration will influence enzyme activity
Definition
Because the enzymes are limited and have a maximum amount of substrates they can take
Term
Enzyme inhibitors:
Noncompetitive inhibition
Definition
Noncompetitive inhibitor goes in allosteric site, and changes shape of active site. Making function inactive
Term
Enzyme inhibitors:
Feedback inhibition
Definition
End product can inhibit the production by binding to earlier allosteric site until final product is needed again
Term
Ribozymes
Definition
RNA that cuts and splices RNA
These are catalysts, and are NOT PROTEIN BASED.
Term
Oxidation-Reduction Rxns:
Oxidation
Definition
Removal of electrons
Term
Oxidation-Reduction Rxns:
Reduction
Definition
Gain of electrons
Term
Oxidation-Reduction Rxns:
BIOLOGICAL oxidations
Definition
Are often "dehydrogenations" because electrons are associated with hydrogen atoms in biological systems.
Term
High energy phosphate bonds
Definition
In between phosphates in ATP and ADP. When bonds are broken, E is released, E is used to make bonds
Term
Phosphate group has what type of charge?
Definition
Negative
Term
Substrate-level phosphorylation
Definition
Phosphate taken from carbon chain, and added to ADP to make ATP
Term
Oxidative phosphorylation
Definition
Energy released from transfer electrons of one compound (oxidation) to another (reduction) in the ETC is used to generate ATP (via CHEMIOSMOSIS)
Term
CHEMIOSMOSIS
Definition
Use of a proton gradient across a membrane through an ATP synthase to synthesize ATP.
Term
Photophosphorylation
Definition
Light causes chlorophyll to give up electrons. E released from transfer of electrons (oxidation) of chlorophyll through a system of carrier molecules is used to generate ATP
Term
Carbohydrate catabolism
Definition
The breakdown of carbohydrates to release energy
Term
4 components to carbohydrate catabolism
Definition
Glycolysis
Intermediate step
Krebs cycle
Electron transport chain (ETC)
Term
Glycolysis
Definition
The oxidation of glucose to pyruvic acid produces ATP and NADH
Term
Intermediate step
Definition
Oxidation of pyruvic acid
Term
Krebs cycle
Definition
Oxidation of acetyl CoA
Term
Must have steps to oxidate glucose
Definition
To control energy release, avoid cell from dying from heat
Term
Reactants of glycolysis
Definition
Glucose
Term
Products of glycolysis
Definition
ATP
NADH
2 pyruvic acid
Term
Aerobic cellular respiration
Definition
Uses oxygen as the ultimate electron acceptor (inorganic)
Term
Anaerobic cellular respiration
Definition
Uses an inorganic molecule other than oxygen (e.g. nitrate or carbonate) as the ultimate electron acceptor
Term
Fermentation
Definition
Uses an ORGANIC molecule as the ultimate electron acceptor
Term
Glycolysis equation
Definition
Glucose 2ATP 2ADP 2PO4 2NAD ==> 2pyruvic acid 4ATP 2NADH 2H 2H2O
Term
Alternatives to glycolysis
Definition
Pentose phosphate pathway
Entner-Doudoroff pathway
Term
Pentose phosphate pathway
Definition
Uses pentoses (breakdown) and produces NADPH and intermediate pentosis (used in nucleic acid synthesis, glucose synthesis from CO2 in photosynthesis, and synthesis
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