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Metabolism
Metabolism, Enzymes, Thermodynamics
70
Biology
Undergraduate 1
09/14/2011

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Cards

Term
Catabolic Pathway
Definition

degradative

release energy

Term
Anabolic Pathway
Definition

consume energy

build molecules

Term
Energy
Definition

capacity to cause change

rearrange collections of matter

Term
Thermodynamics
Definition
study of energy transformations that occur in a collection of matter
Term
First Law of Thermodynamics
Definition

energy of the universe is constant

energy can be transferred and transformed, but it cannot be created or destroyed

a system can put heat to work only when there is a temperature difference that results in the heat flowing from warm to cool


Term
Entropy
Definition
measure of disorder, randomness
Term
Second Law of Thermodynamics
Definition

 

every energy transfer or transformation increase the entropy of the universe

unstoppable trend toward randomness of universe as a whole

for a process to occur on its own without any help it must increase the entropy of the universe


 

Term
Spontaneous Process
Definition
process that can occur without the input of energy
Term
Non-spontaneous process
Definition

cannot occur on its own

will happen only if energy is added to the system

Term
Free energy
Definition

"G"

portion of a system's energy that can perform work

measure of instability

Term
Processes with negative G...spontaneous/non-spontaneous?
Definition
spontaneous
Term
Equilibrium
Definition

state of maximum stability

never spontaneously move away from equilibrium

system at equilibrium can do no work

(cell at equilibrium is dead)

Term
Exergonic reaction
Definition

net release of free energy

negative G

spontaneous

Term
Endergonic reaction
Definition

absorbs free energy

positive G

non-spontaneous

 

Term
Are chemical reactions of metabolism reversible?
Definition
yes
Term
Why is the cell's metabolism as a whole never at equilibrium?
Definition

constant flow of materials in and out

some reversible reactions are pulled in one direction--kept out of equilibrium

product does not accumulate

cellular respiration: huge free energy difference between glucose and oxygen

Term
Chemical work
Definition
pushing of endergonic reactions (non-spontaneous)
Term
Energy coupling
Definition
use of exergonic reaction to drive endergonic
Term
ATP
Definition

contains sugar, ribose, nitrogenous base adenine, three phosphate groups

 

Term
How are ATP phosphate bonds broken?
Definition
hydrolysis
Term
Phosphorylation
Definition
transfer of phosphate group
Term
Enzyme
Definition

macromolecule catalyst

globular protein

Term
Activation Energy
Definition

initial investment of energy for starting a reaction

provides barrier that determines rate of reaction

Term
WHy is heat impractical as a catalyst for cellular reactions?
Definition
denatures proteins
Term
How does an enzyme affect activation energy?
Definition
lowers it
Term
Does an enzyme affect G?
Definition
no
Term
Why are enzymes so specific?
Definition
3d proteins with complex structures
Term
Induced fit
Definition
enzyme changes shape slightly do to interactions between chemical groups to better fit substrate
Term
Substrate held inlace but what kind of bonds
Definition

weak

hydrogen, ionic

Term
Four ways enzymes help catalyze a reaction.
Definition

active site provides a template for properly orienting substrate

enzyme stretches molecules toward transition state form

active site provides microenvironment for optimal conditions

participate directly

Term
Rate at which enzyme converts substrate with relation to concentration of substrate
Definition
more substrate molecules=more frequent access of active sites
Term
Saturated enzyme
Definition
as soon as one substrate leaves an active site another is there
Term
Cofactor
Definition

nonprotein helper for catalytic activity

inorganic

Term
Coenzyme
Definition
organic version of cofactor
Term
Competitive inhibitors
Definition
bind to enzyme active site, reducing enzyme activity by blocking substrates from entering
Term
Noncompetitive inhibitor
Definition
bind to part of enzyme that is not active site, causing enzyme to change shape and become less effective
Term
Allosteric reaction
Definition

protein's function at one site is affected bybinding of regulatory molecule to a separate site

inhibit of stimulate

Term
Activator
Definition
stabilizes shape with active sites
Term
Inhibitor
Definition
Stabilizes inactive form
Term
Cooperativity
Definition

substrate binds to one active site and triggers shape change in all subunits

amplifies response of enzymes to substrates

Term
Feedback inhibition
Definition
metabolic pathway switched off by inhibitory binding of its end product to an enzyme that acts early in the pathway
Term
Fermentation
Definition
partial degradation of sugars/organic fuel that occurs without oxygen
Term
Aerobic respiration
Definition

most prevalent and efficient catabolic pathway

oxygen is consumed as a reactant

Term
Redox reactions
Definition
electron transfer
Term
Oxidation
Definition

loss of electrons

loss of Hydrogen ions

gain oxygen

lose energy

Term
Reduction
Definition

gain electrons

gain hydrogen ions

lose oxygen

absorb energy

Term
Do all redox reaction involve complete transfer of electrons?
Definition
no
Term
electron transport chain
Definition

molecules built into inner membrane of mitochondria

electrons cascade down chain from one molecule to another of increasing electronegativity

 

Term
Glycolysis
Definition

occurs in cytosol

glucose to two pyruvates

spends 2 ATP, make 4=net 2 ATP

2 NADH also produced

Term
Pyruvate Oxidation
Definition

pyruvate to acetyl CoA

produces CO2 and NADH per pyruvate

Term
Citric Acid Cycle
Definition

Krebs cycle

complete breakdown to CO2

generates 6 NADH (3 per turn), 2 FADH2 (1 per turn), 2 ATP (1 per turn), 4 CO2 (2 per turn)

Term
Chemiosmosis
Definition

ETC

generates most ATP

NADH generates less than ATP

Term
Proton Motive Force
Definition
capacity of gradient to perform work
Term
Electron Transport chain used in fermentation?
Definition

no

but it is in anaerobic respiration

Term
Regulator
Definition
uses internal mechanism to control internal change in the face of external fluctuation
Term
Conformer
Definition
 allows internal conditions to change in accordance with external changes
Term
Homeostasis
Definition
maintenance of internal balance
Term
Circadian Rhythm
Definition
set of physiological changes occurring roughly every 24 horus
Term
Acclimitization
Definition

gradual process by whihc animals adjust to changes in eternalenvironment

NOT adaptation

Term
Thermoregulation
Definition
process by which animals maintain internal temperature
Term
Endothermic
Definition
warmed by heat generated by metabolism
Term
Ectothermic
Definition
gain heat from external sources
Term
Poikilotherm
Definition
body temperature varies with environment
Term
Homeotherm
Definition
constant body temperature
Term
Vasodilation
Definition
widening of superficial blood vessels
Term
Thermogenesis
Definition
heat production
Term
Basal Metabolic Rate
Definition
minimum metabolic rate of a nongrowing endotherm, at rest, empty stomach, not under stress
Term
Standard Metabolic Rate
Definition
metabolic rate of fasting, nonstresses, endotherm at rest
Term
Torpor
Definition

physiological state of decreased activity and metabolism

save energy while avoiding danger

Term
Hibernation
Definition
extended torpor
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