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Medical microbiology
N/A
122
Biology
Undergraduate 4
12/09/2012

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Term
Normal flora
Definition
organisms in/on your body
Term
Parasitic relationship
Definition
there a cost to you and a benefit to the parasite
Term
pathogen
Definition
the parasite harms you
Term
Robert Koch
Definition
Koch's Postulates 1877
Term
Koch's Postulates (experiment)
Definition
i. Experiment: isolate colony, identify org, inject the org into a live animal, disease is reproduced in the new animal, isolate the pathogen from the animal, identify the microbes
Term
Exceptions to Koch's Postulates
Definition
ii. Exceptions: 1.reinfection may not work 2. Different response in diff animals 3. Virus, cell line 4. Obligate intracellular pathogens are difficult to isolate
Term
John Snow
Definition
1950 mapped the spread of Cholera in London -> infectious agents can travel in H20, fecal/oral
Used stats, personal accounts, history
Epidemiology  public health
Term
Host Responses
Definition
Signs, symptoms, syndromes
Term
How a disease acts in a host/pop
Definition
Communicable
Contagious
Noncommunicable
Term
Incidence
Definition
a fraction of a population that contracts it during a period of time
Term
Prevalence
Definition
the fraction of the population having the disease at a specific time
Term
Sporadic
Definition
Only occasionally (typhoid in US)
Term
Endemic
Definition
Constantly present (common cold)
Term
Epidemic
Definition
many people acquire in a short time
Term
Pandemic
Definition
Worldwide epidemic
Term
acute
Definition
develops rapidly, lasts short time (influenza)
Term
chronic
Definition
develops slowly, less severe, likely to recure long periods (mono
Term
subacute
Definition
in between acute and chronic
Term
latent
Definition
causative agent remains inactive for a long period of time (shingles)
Term
Local infection
Definition
pathogen limited to small area of the body (boil)
Term
systemic
Definition
spread throughout the body in blood or lymph (measles)
Term
focal infection
Definition
agents of a local infection spread to specific parts of the body (teeth to gums, tonsils)
Term
bacteremia
Definition
bacteria in the blood
Term
septicemia
Definition
bacteria replicating in the blood
Term
toxemia
Definition
presence of toxins in the blood
Term
viremia
Definition
presence of viruses in the blood
Term
primary infection
Definition
acute infection that causes the initial illness
Term
Secondary infection
Definition
opportunistic pathogen after the primary infection has weakened the host
Term
subclinical
Definition
no noticeable illness (carrier)
Term
Reservoir
Definition
place where pathogens live
humans
animals
soil
water
Term
transmission of disease
Definition
contact: direct, indirect, droplets
vectors: mechanical and biological
vehicle: water air
Term
Period of incubation
Definition
no signs or symptoms
Term
prodromal period
Definition
mild signs and symptoms
Term
period of illness
Definition
most acute signs/symptoms
Term
acme
Definition
peak point; death if immune responses/meds don't work
Term
period of decline
Definition
immune system "kicks in"
Term
period of convalescence
Definition
still contagious
Term
capabilities of pathogens
Definition
i. Maintain a reservoir
ii. Leave a reservoir (transmission route)
iii. Adhere to a host
iv. Invade a host
v. Evade host defenses
vi. Colonize and multiply in the host
vii. Exit the host and return to the reservoir (or infect a new host)
Term
Adherence factors
Definition
Glycocalyx (capsule)- very sticky
Pili, fimbriae (attach via receptor)
Protein M (streptococcus): sticky component
Term
ID50
Definition
the infectious dose required to infect 50% of the hosts in the study
Term
LD50
Definition
the lethal dose required to kill 50% of the host in the study
Term
Virulence factors
Definition
chemicals or structures produced by the pathogen that cause direct damage to the host
Term
Types of virulence factors
Definition
Hyaluronidase: enzyme breaks down hyaluronic acid (tissue cement)(Staphylococcus)
Leukocidins: destroy WBCs (Stapylococcus)
Hemolysins: lyse RBCs (B streptococci)
Coagulases: produce clots to block antibodies (S. aureus)
Streptokinases and kinases: break down fibrin in clots- allow it to invade more tissue
Collagenase: breaks down connective tissue (Clostridium)
IGA proteases: destroy antibodies and evade (Neisseria)
Invasins: use cytoskeleton filaments to make a cage for protection (E.coli, Salmonella)
Toxins: more indirect damage
Term
Exotoxins
Definition
i. Exotoxins: produced inside the cell and are secreted outside
1.AB toxins: very specific damage
a.Cytolytic: cells lysis and cell death (diphtheria toxin
b.Neurotoxic (botulinum toxins)
c.Enterotoxic: cause gastroenteritis
2.Membrane disrupting
3.Superantigen: stimulate a large number of immune response reactions, produced by Streptococci & Staphylococci
Term
Endotoxins
Definition
1. Gram negative bacteria produce lipopolysaccharides as part of the out layer of the cell walls. The Lipid A components are called endotoxins. They are cell-bound and released in large numbers only when the cells lyse
Term
Ritter's Disease (skin)
Definition
Etiological agent: Stapylococcus aureus
Mode of transmission: direct contact
Treatment: IV antibiotics
Term
Buruli Ulcer (skin)
Definition
i. Etiological agent: Mycobacterium ulceras
Reservoir: water
Mode of transmission: unknown
Treatments: antibiotics
Term
Trachoma (eye)
Definition
Etiological agent: Chlamydia trachomatis
Mode of transmission: direct contact, fomites (towels), vector (flies)
Treatments: antibiotics, eyelid surgery
Epidemic: 50 countries in Africa, Asia, Middle East
Term
Impetigo (skin)
Definition
Etiological agent: Staphylococcus aureus and Streptococcus pyogenes
Mode of transmission: direct contact or fomites
Treatment: antibiotic cream or pills
Term
Necrotizing faciitis (skin)
Definition
Etiological agent: exotoxins A and B of Streptococcus pyrogenes
Transmission: direct contact
Treatment: antibiotics, excision of damaged tissue, hypobaric chamber
Term
African Trypanosomiasis (nervous system)
Definition
Etiological agent: Trypanosoma brucei gambiense & Trypanosoma brucei rhodesiense
Vector: tsetse fly
Transmission: bite of the tsetse fly
Treatment: chemtheraputic drugs
Epidemic: Africa
Term
Rabies (nervous system)
Definition
Etiological agent: lyssavirus (RNA)
Reservoir: wild animals
Transmission: direct contact (wound)
Treatment: post-exposure prophylaxis
Epidemic: developing countries like Asia and Africa
Term
Botulism (nervous system)
Definition
Etiological agent: Clostridum botulinum Toxins A, B, E (neurotoxins)
Reservoir: soil, animals
Transmission: ingestion of contaminated foods or direct contact (wound)
Treatment: Botulinus antitoxin
Term
Tetanus (nervous system)
Definition
Etiological agent: Clostridium tetani (toxins)
Reservoir: soil, animal intestinal tracts, and feces
Transmission: wound contact, animal bites
Treatment: antitoxin, vaccine
Term
Polio (nervous system)
Definition
Etiological agent: Poliovirus
Mode of transmission: fecal oral
Treatment: no cure, vaccine
Epidemic: 1940s and 50s
Term
Bacterial endocarditis (cardiovascular)
Definition
Etiological agent: anything that causes bacteremia: Streptococcus, Staphylococcus, Enterococci
Mode of Transmission: direct contact with wound (brushing teeth)
Treatment: antimicrobial therapy or surgery
Epidemic: 2009 Nottingham University Hospital heart valve patients
Term
Lyme disease
Definition
Etiological agent: Borrelia burgodorferi
Reservoir: animals
Mode of transmission: direct or fomites or respiratory droplets
Treatment: penicillin and corticosteroid
Term
Gas Gangrene
Definition
Etiological agent: Clostridium perfringens
Reservoir: soil
Transmission: open wound
Treatment: surgery, sterilization, O2
Term
Anthrax (cardio/lymph)
Definition
Etiological agent: Bacillus anthracis (2 exotoxins)
Reservoir: soil
Transmission: inhalation of spores or direct contact with soil/animals
Treatment: antibiotics, vaccine
Epidemics: 2001 bioterrorism
Term
Diphtheria (resp)
Definition
Cornyebacterium diphtheriae (exotoxin)
Reservoir: humans/animals
Transmission: respiratory droplets, contaminated drinks
Treatment: vaccines, antitoxin, antibiotics
Term
Tuberculosis (resp)
Definition
Etiological agent: Mycobacterium tuberculosis
Reservoir: humans
Transmission: respiratory droplets
Treatment: antibiotics
Epidemic: 2 mill ppl/year
Term
Histoplasmosis (resp)
Definition
Etiological agent: Histoplasma capsulatum
Reservoir: fungus that grows in soil
Transmission: inhalation of airborne fungal spores
Treatment: antifungal meds
Term
Whopping cough/ pertussis (resp)
Definition
Etiological agent: Bordetella pertussis (cytotoxin)
Transmission: respiratory droplets
Treatment: antibiotics, vaccine
Epidemic: Washington 2012, Cali 2010
Term
Scarlet Fever (resp)
Definition
Etiological agent: Group A Streptococcus pyogenes (exotoxins A, B, C & M protein)
Reservoir: Humans
Transmission: respiratory droplets or direct contact
Treatment: antibiotics
Term
Mumps (digestive)
Definition
Etiological agent: paramyxovirus of the genus Rubulavirus
Reservoir: humans
Transmission: respiratory droplets
Treatment: vaccine (preventative)
Epidemic: 2006 Midwest college students
Term
Typhoid fever (digestive)
Definition
Etiological agent: Salmonella typhi
Reservoir: water
Host: humans
Transmission: fecal oral
Treatment: vaccine (preventative)
Epidemics: 17 mill ppl infected each year
Term
Hepatitis C (digestive)
Definition
Etiological agent: Hepatitis C virus
Reservoir: humans
Transmission: blood to blood
Treatment: antivirals
Epidemic: 3.2 million ppl in the US
Term
Gastric ulcers (digestive)
Definition
Etiological agent: Helicobacter pylori
Mode of transmission: fecal oral
Epidemic: 90% of population in Brazil
Term
Cholera (digestive)
Definition
Etiological agent: Vibrio cholerae (exotoxin A, B)
Mode of transmission: fecal oral
Treatment: rehydration and salt; antibiotics
Outbreaks: Feb 2012 Sierra Leone 18500 cases
Term
Syphilis (urogenital)
Definition
Etiological agent: Treponema pallidum
Mode of transmission: sexual contact
Treatment: penicillin
Epidemic: 10-12 million ww.
Term
Leptospirosis (urogenital)
Definition
Etiological agent: Leptospira interrogans
Reservoir: rodents/animals
Mode of transmission: direct contact with soil, water or plants contaminated with urine
Treatment: antibiotics
Epidemics: Caribbean, latin America
Term
Pyelonephritis (urogenital)
Definition
Etiological agent: E. coli, Streptococcus faecalis and Staphylococcus aureus
Reservoir: Humans/animals
Portal of entry: Urethral opening
Treatment: antibiotics
Epidemic: neonatal ward in Sweden
Term
Candidiasis (urogenital)
Definition
Etiological agent: Candid albicans (toxins)
Transmission: direct contact
Treatment: topical drugs/antifungals/oral meds
Term
Genital herpes (urogenital)
Definition
Etiological agent: Herpes simplex virus 1 & 2
Mode of transmission: sexual contact
Reservoir: humans
Treatment: incurable; antivirals
Epidemic: 16.2% adults in US; 65-90% world wide
Term
Innate immunity
Definition
born with; non-specific (ex: skin, barriers); target all non self
Term
Innate immunity: 1st line of defense: physical and chemical
Definition
Physical: skin; mucous linings; flushings, cilia; flow of urine; movement of food
Chemical: saliva (lysozyme), skin secretions
Term
Innate immunity second line of defense
Definition
Blood: formed elements (cells) and soluble proteins
Formed elements= platelets (clotting; macrophage (phagocytosis); dendritic cells (phaocytosis), granulocytes: eosinophils (allergy), neutrophils (phagocyte), basophil (allergies and worms)
Term
Wright Stain
Definition
differential white blood cell count
Term
Soluble proteins (where are they made, what do they do?)
Definition
Made in the liver
(1) Cytolysis
(2) Coating a cell= opsonization
(a) Captures bacteria to enhance phagocytosis
(3) Cascade effect (several proteins act together)
Term
cytokines
Definition
cell secretions that help communicate with immune cells
Term
Toll-like receptors; Pathogen Associated Molecular Patterns (PAMPs)
Definition
(1) Your TLR can recognize LPS (pathogen specific substance) and release cytokines which target the liver and activate acute phase proteins (APP)
Term
acute phase proteins (APP)
Definition
activate phagocytes, migrate MAC, PMNs
Term
Inflammation
Definition
Very rapid, nonspecific
Signs/symptoms: red, swollen, heat, painful, (loss of function)
Term
Inflammation chemicals
Definition
APP are triggered and travel to the site; cytokines and chemicals cause: vasodilation, phagocytosis, repair of tissue
Term
Complement serum proteins
Definition
Opsonization: coating, cytolysis
Term
Interferons
Definition
Cells being attacked by viruses release INFs to help protect neighboring cells against infection
Term
Lectins
Definition
Produced in the liver
(1) Can opsonify
(2) Circulate in the body
Term
Acquired immunity
Definition
Host has to be exposed to something foreign (be sensitized) before you have a response
Term
Lymphocytes
Definition
WBCs derived from a lymphocytic stem cell line
Term
B cell
Definition
in-bone marrow: humoral immunity (circulate in the blood)
Term
T cell
Definition
processed in the Thymus: cell-mediated immunity
Term
MHCs: Major histocompatability markers (on nucleated cells only)
Definition
self antigens
Term
B cells: plasma cells
Definition
active; produce proteins called antibodies
Term
Antibody processes
Definition
Agglutinate: make a big lattice of bacteria cells and destroy the antigens in the liver
Opsonization (coating)
Antibodies function as a “tag” to stimulate phagocytosis
Phagocytosis
Neutralize toxins via complexing it with antibodies
Integrate w/ cell-mediated (T-cells)
Term
Memory b-cells: Quiescent
Definition
Clones that have been “sensitized” by an antigen but are inactive until it comes in contact with the antigen again
Term
Cell-mediated immunity: T lymphocytes
Definition
Must be presented to the antigen (don’t circulate) by an APC
Term
APC: antigen presenting cell
Definition
Macrophage, dendritic cell (some are neutrophils and B cells)
Term
CD4
Definition
Interleukins; Regulators, Produced Th1 and Th2
Term
T helper 1
Definition
Secrete IL-2 in order to stimulate both WBCs and self-proliferation
Create active clones and memory clones
Term
T helper 2
Definition
Stimulated by an APC and antigen.
Clones secrete IL 4, 5
Stimulate B cells which produce antibodies
Term
CD8
Definition
cytokines, perforins (kill via lysis)
Produce Tc cells
Term
Tc
Definition
Create memory and active clones (secrete the cytotoxins)
Term
Hypersensitivity
Definition
An exaggerated immune response
May come about via too many antibodies, t-cells or antigens
Term
Charles Richet
Definition
1913 Nobel Prize in Medicine
TB serum, injected into human, caused anaphylactic shock
Term
Type 1 Hypersensitivity: Anaphylaxis
Definition
B-cells and IgE antibodies
Mast cellss (linings/mucous) and basophils (granuols)
Antigens
(a)Pollen: inhale (upper respiratory): localized
(b)Food: eating (systemic)
(c)Bites: systemic
Term
Type 2: Cytotoxic hypersensitivity: Cell Bound
Definition
B cells -> IgG and IgM
Involves cell bound antigens ex: those on RBC like RH factors
Eg: transfusion mistake or hemolytic disease
Term
Hemolytic disease
Definition
mom antigen and baby antigen are different; active=complement proteins (perforins) that kill/lyse developing embryo
Term
Type 3: Immune Complex: Not cell bound
Definition
Soluble antigens
B cells-> Ig G and IgM (forms big complexes)
Complement proteins
Disease: Glomerulonephritis (kidneys)
Term
Glomerulonephritis (kidneys)
Definition
Complexes form in the glomerulous : stops filtering and ALERTS an inflammatory response -> release of complement proteins -> WORSE
Term
Type 4: Delayed Type ( 2days- weeks)
Definition
T cells (Tc)
Ex: Latex  dermatitis (rash)
Poison Oak  systemic rash/swelling
Term
Autoimmune Responses (Hypersensitivity)
Definition
Loss of self recognition
Response of AB/T cells against own antigens (MHC)
Term
Causes of autoimmune responses
Definition
i) Infections: mimicry
ii) Antigen: not exposed to the body (ex: inside of eye)
iii) Hormonal
Term
4 most common Autoimmune Responses
Definition
Myasthenia Gravis: IgG blocks nerve synapses causing paralysis (type 2 or 4)
Rheumatoid arthritis: 2 mill mainly women;IgM and IgG and complement form complexes @ joints; virus infections may be the cause (type 3)
Lupus: 200,000 to 1.5 million AB vs. cell nuclei (type 3)
Insulin dependent diabetes: 1.6 million (Type 4)
Term
Autoimmune disorders/deficiencies
Definition
innate-born with it or acquired- infection, injury, cancer
Term
Phagocyte disorders/deficiencies
Definition
Effects
(1) Innate immunity (non-specific)
(2) Acquired- APC
Chediak- Higaski Syndrome (no lysosomes)
Chronic Granulomatous Disease (no H2O2 in macrophages)
Term
T-cell deficiencies
Definition
susceptible to viral and intracellular parasites
Addison’s disease: INNATE: Tc and adrenal gland (produces too much cortisol)
Hodgkin’s disease: block T cell action kill APCs (can be acquired via a cancerous tissue attacking lymphoid)
AIDs-ACQUIRED CD4 (Th) destroyed
Di Georges: INNATE: born without a thymus (no T cells)
Juvenile diabetes
Term
B-cell deficiencies
Definition
susceptible to bacterial infections, especially skin and respiratory tract
Bruton’s agammaglobulinemia
Term
Combined immunodeficiency
Definition
SCID (severe combined immunodeficiency): INNATE: receptors on t cells can’t communicate with WBCs because of mutation at IL2 receptors (cytokine)
(1) T cells can’t grow and divide
(2) NO IMMUNITY
Term
Transplant/graft rejections
Definition
MHC’s elicit t-cell response
Autograft: self
Isograft: twin
Allograft: same species
Xenograft: different species
Term
Serology
Definition
study and use of antibodies in lab, clinic
Term
1975 Jerne, Milstein & Kohler
Definition
Goal: immortal B cell that would secrete 1 antibody
Myeloma (cancer cell) + B cell -> hybridoma
If the b cell was pre-exposed to an antigen then the hybridoma= MONOCLONAL AB PRODUCTION (MABs)
Term
Serology assays
Definition
Western blot: electrophorize proteins and use an MAB to target a protein then use an anti-AB to target the original AB plus an enzyme to “mark/color” the AB.
DNA: Southern blot
Home Pregnancy Test: measures gomadotrophin hormone (MAB)
Elisa: enzyme linked immunoassays
If you have antibodies circulating in your body against an antigen, you are Sero +
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