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MCB 61 Midterm 1
MCB 61 Midterm 1
79
Biology
Undergraduate 2
02/26/2011

Additional Biology Flashcards

 


 

Cards

Term
Charles Darwin
Definition

- Selective breeding of plants and animals 

- The diversity of living organisms is understandable in terms of evolution and natural selection

- The origin of species 

- Cricks grandfather sent him the material for his study on freshwater bivalves 

Term
Gregor Mendel 
Definition

- Traits segregate and sort in an orderly fashion during reproduction 

- Most famous experiment = peas 

- showed that characteristics of peas could be selectively bread and would inherit in a very quantitatively organized way 

- Genes underlie traits 

Term
Niels Bohr 
Definition

- Quantum physicists 
- second to Einstein 
- a founder of quantum physics 

Term
Max Delbruck 
Definition

- Genes are Molecules

- Gene Mutation 

- "On the nature of Gene Mutations and Genes"

- "Part Three : Atomic PHysics Model of Gene Mutation"  

Term
Wendell Stanley 
Definition

- Crystallization of tobacco mosaic virus

- UCB  

- Virus is a simple structure made of just protein and nucleic acid that has genes in it 

- The crystalization showed that it is mostly genes and therefore the genes have some kind of molecular regularity 

- suggestive that genes are molecules 

Term
Erwin Schrodinger 
Definition

-Wrote a book "What is life"

- one of the main formulators of mathematical structure of quantum mechanics 

- Inspired Francis Crick and James Watson 

-  "What is life"

- Thought that molecular probing of life might lead to new knowledge of nature and laws of physics 

Term
Oswald Avery 
Definition

- Implicitly demonstrated in the Journal of Experimental    Medicine that DNA carries genetic information 

- Did not fit with people's conception at the time that genetic code involved proteins/ amino acids 

Term
Linus Pauling
Definition

- Noble prize in chemistry 

- Concerned with spread of radioactive materal in nuclear testing

- tried to limit atomic weapons development 

- Wrote about Vitamin C as a treatment for common cold 

- Labeled Communist

- Unworkable structural model of DNA

- Thought DNA was a triple Helix

Term
Ernest Lawrence 
Definition

- Worked in uranium isotope separation for the Manhattan project

- something about atomic bombs 

Term
Gene
Definition

- the fundamental unit of heredity 

- sequence of nucleotides (A, G, C, T) in DNA 

Term
Nucleotides Of DNA
Definition

Adenine

Guanine

Cytosine 

Theymine (becomes uricil in mRNA)

Term
Genetic Code
Definition

- The relationship between DNA nucleotides and the amino  acids in proteins 

- (3 nucleotides (codon) = 1 amino acid)

Term
Impermeable Barrier 
Definition
Ions cannot permeate phospholipid bilayer membrane 
Term
Semipermeable Barrier
Definition
Some protein channels allow certain things to get through 
Term
Nerve Cells
Definition

Mostly water

- within water is mostly ions

 

Term
Ion Channel Proteins 
Definition

- Various membrane proteins permit and regulate ion movement across biological membranes 

- Channels 

- ATP- dependent pumps 

- other transport proteins 

** Difference ( if a channel is open then ions will flow through from a place with more concentration to a place with less concentration. ATP pumps move things from a place with less concentration to a place with more concentration. The energy itself is called ATP)

Term
ATP
Definition

- Adenosine Tri-phosphate 

- intercellular energy currency 

- energy storage in phosphate bonds 

- called so because of molecular components :

1. Adine (central piece)

2. Ribose Sugar

3. Phosphate groups

- Cells spend energy to make ATP and then this ATP folats around and does various things inside the cell 

- Used to move ions from one side to the other against their concentration gradient 

Term

Sodium/ Potassium Pumps 

(Na+/ K+)

Definition

- Pumps Na+ out of neuron 

- Pumps K+ into the neuorn 

- uses ATP as an energy source because it is doing   this constantly

- 1 ATP used =

- 3 Na+ out 

- 2 K+ in 

Term
Ion Connection Difference 
Definition

Na+ outside > inside

K+ outside < Inside 

Cl- outside > inside 

Ca ++ outside > inside 

** Everything is more concentra

Term

 intracellular and extracellular ion concentration differences 


Definition

- inside of the cell is more negative and the outside of the cell is more positive 


Term

Hyperpolarization 

 

Definition

Cell becomes more negative (more polarized relative to the resting potential) 

This can happen when a K+ opens because the potassium flows out

OR a chloride channel can open and chloride will flow IN and this will cause a more negative charge inside 

Term
Depolarization 
Definition

Opposite case of hyper polarization (more to a more positive level) 

A channel can open that allows sodium to flow through

carries positive charge inside making the inside less negative

 

This would also happen if a calcium ion opened for the same reasons 

Term
Membrane Potential 
Definition
The difference in voltage between the interior and exterior of a cell 
Term
Resting Potential 
Definition
- 70 mV
Term
Luigi Galvani 
Definition

- Changed the thinking of electricity and the body 

- "Animal Electricity" - muscles move as a result of internal electrical forces that can be triggered by external electrical stiumlation 

- frog legs

- because of his work the whole idea of electricity and life and nervous system kinda took off 

Term
Hodgkin and Huxley
Definition

Appreciated the large size of squid axons

 

- Recorded an action potential from inside the axon

- Happened at the same time as WWII,

called to help and had to drop everything for about 6 years

- Predicted existence of channels  

Term
Voltage Gated Ion Channels
Definition

- Ion channels are closed at resting potential 

- when voltage changes they will either open or close 

- when membrane voltage changes then the force of the tug changes, it can pop open ions 

Term
Action Potential 
Definition

- Resting potential = -70mV

- Both Na+ and K+ closed 

- Na + open and there is a depolarization at the top of the peak at +40 mV

- Re-polarization occurs ( K+ open  (around 30 mV) and Na+ close)

- Hyperpolarization (-80 mV) (k+ open)


Term
CNS Myelin
Definition

- Layers of lipid-bilayer membrane cross-linked by proteins 

- Very thick boundary layer 

Term
Oligodendrocyte Glial
Definition
cells that form myelin sheath in CNS
Term
Schwann Cells
Definition
cells that form myelin sheath in PNS
Term
Types of Glial cells in human nervous system 
Definition

CNS:

Ependymal cell

Astrocyte cell 

Microglial cell 

Oligodendrocyte cell 

PNS:

Schwann cell 

Term
Louis Ranvier 
Definition

Discovered myelin and the nodes of Ranvier 

French physician and anatomist 

 

- The gaps between myelin = the nodes of Ranvier

Term
Saltatory Conduction 
Definition

- Saltar = to dance 

- action potential in mylenated axon

- action potential jumps from one something to another  

Term

Demyelinating Disease 

- Multiple Sclerosis 

Definition

- Auto-immune damage to myelin 

- unknown cause 

theory "body's own immune system starts attacking myelin

- Nerve conduction impaired 


Term
Hyponatermia 
Definition

Too much water

low sodium 

Dilution of ions essential for function of nervous system 

Term

Paracelsus 

 

 

 

** KNOW HOW TO SPELL**

Definition
" Everything is a poison. The difference between a poison and a remedy depends on the dose "
Term
Blood-Brain Barrier 
Definition

- Protective barrier around the CNS

- tight junctions between cells forming the blood vessal walls 

 **formation of tight junctions facilitated by astrocytes 

 


Term
Tetrodotoxin general / animals 
Definition

- blocks voltage gated sodium channels 

- no nerve signals can be sent 

- a chemical produced by bacterial living symbiotically with these animals 

 

* puffer fish * octopus (blue ringed)

* some starfish and Crabs

* blow fish 

* fungi 

* newt/ salamander 

Term
TTX Poisoning
Definition

- peripheral nerves unable to generate normal action potential 

 

Symptoms: numbness, muscle weakness, paralysis 

Death = respiratory paralysis 

 

* DOES NOT CROSS BLOOD BRAIN BARRIER 

-- does not get into the brain 

Term
What CAN cross the blood brain barrier
Definition

Lipophilic/hydrophobic molecules 

a few molecules that are transported (Glucose sugar and some amino acids) 

Term
TTX Resistance 
Definition

- May result from changes in only a single amino acid in the voltage gates Na+ ions 

 

- ( one out of ~ 1800 amino acids)

 

- produces a large decrease in binding affinity (stickiness) of TTX for the Na+ channel proteins 

Term
Saxitoxin 
Definition

- When dinoflagellates bloom during the red-tide shell fish fed on them. 

- shellfish eat them and can accumulate their saxitoxin without dying 

- Now the shell fish have the poison and we eat it and can get sick

 

Term
Paralytic Shellfish Poisoning (PSP)
Definition

Condition that saxitoxin produces

- People eat shell fish and can get sick 

- SAME SYMPTOMS AS TTX:

numbness, muscular weakness, paralysis 

DEATH: respiratory paralysis 

attaches to voltage gated sodium channels and blocks it

** DOES NOT STOP HEART

** DOES NOT CROSS THE BLOOD BRAIN BARRIER 

therefore doesn't enter the CNS 

Term
STX Resistance 
Definition

Results from mutations that change amino acids in the voltage gated sodium channel 

- SAME AS TTX

- subtle changes in protein structure

 

Term
Cocaine 
Definition

Toothache Drops 

- first thing to be identified as a local anesthetic 

- comes from coca plant in South America 

- grown originally for its leaves to make tea and to be chewed making it a mild stimulant 

- first discovered in the 1800s 

- local anesthetic 

Term
Local Anesthetic 
Definition

Numbs sensation locally 

COCAINE

doesnt work on the brain, only works on the specific area 

- Interferes with normal opening/closing action of voltage-gated Na+ channels so when the voltage changes to pop-open there is a change so that it wont 

Term
Batrachotoxin 
Definition

(Phyllobates Terribilis) Tree Frogs 

 

- in the amazon jungles of south america darts are dripped in their poisonous secretion

- used to shoot and capture animals by hunters  

 

- BTX prevents CLOSURE of voltage gated na+ channels 

- not really sure where it is from but maybe beetles ? 

Term
Ciguatoxin 
Definition

- associated with consumption of a variety of fish 

- probably produced by dinoflagellates 

- produces a lowering of the threshold voltage for the opening of the channel 

-**TAKES LESS exictation for the voltage gated na+ channel to open 

( aka easier to open)

Symptoms:  Nausea, vomiting, diarrhea, abdominal pain, muscluar pain 

Term

Over view of TOXINS

(Various ways of interfering with the voltage-gated sodium-channel function)

Definition

- Tetrodotoxin 

- Saxitoxin 

- Local Anesthetics

- Batrachotoxins - channels stuck open

 - Ciguatoxins- threshold for opening is lowered 

Term

Ramon y Cajal 

(The neuron Theory)

Definition

- Had a discrete concept of neurons 

- thought that there was a dircetino that signaling wen                    

receiving into dendrite and sending them out the axon 

- also used Golgi's stain to look at things 

- much more accurate 

Term

Camillo Golgi 

(The Reticular Theory)

Definition

- used a stain to look at neurons in the brain 

- came up with this staining process himself 

- based on his drawings he thought that here was a big web in the brain and everything was all interconnected and signals could be sent any which way

 

Term
Chemical Synapse 
Definition

- Synapse = means to clasp together 

- involves the release of neural transmitters from the end of the axon 

Term

Electrical Synapse 

( Gap Junction )

Definition

- what we need to know about 

- direct connection between the two neurons (VERY SMALL GAP)

- CONNECTION VIA CHANNEL PROTEINS (connexons)

which allow ions to flow through 

- a lot of neurons in the brain are connected this way 

Term
Otto Loewi 
Definition

- Frog Hearts 

- woke up in the middle of the night and wrote down his dream which was the idea for his famous experiment 

 

- Put frog hearts in jars of salt water

- electrically stimulated the hearts 

- discovered the first neurotransmitter mocule **(acetylcholine ACh)

- demonstrated chemical signaling

 - if you can generate some action potential in the vagus nerve then the heart slows down 

- he collected fluid from the stimulated hearts and transferred it to another heart that was already beating 

- when he did this THAT heart slowed down 

- this showed that there was a chemical reaction through the SOLUTION

Term

Vagus Nerve

 

Definition

Comes out of the brain stem 

- Parasympathetic connection to the hear 

- one of the cranial nerves 

 

Term
Synaptic Transmission 
Definition

  • Action Potential
  • Voltage-aged Ca++ channels open 
  • Vesicle Fusion 
  • Neurotransmitter release 
  • binding to receptors 
  • this carries signal into the next cell 

Term
Neurotransmitter Inactivation 
Definition

Either by being taken back up into the axon terminal

or chemically inactivated

 

- Reuptake transporter proteins 

- Enzymatic degradation 

 

 

 

Term
Re-uptake Transporters 
Definition

Proteins in the axon terminal that recycle the neurotransmitters and put them back into the cell 

 

- returns to where it came from so it can be resued 

 

Term
Storage Vessicles 
Definition

Lipid bilayer spheres 

- bind onto the end of the axon terminal and release neurotransmitters 

Term

Neurotransmitters 

(General)

 

Definition
mediates the signal from one neuron to the next in the case of a chemical synapse 
Term
Astrocyte Glial Cells 
Definition

- Have reuptake trasnporters 

- have synaptic storage vesicles

- and can possibly release neurotransmitters 

Term
Acetylcholine
Definition

- has a permanent positive charge 

- Does not cross the blood brain barrier 

- because VERY polar 

- it is used in the brain but is not capable of getting into it

 

* Neurotransmitter in :

1.Parasympathetic nervous system 

2. Neuromuscular Junction (connection between nerves and muscles)

3. Brain 

 


Term
Acetylcholine Receptors
Definition

Ionotrophic and metabatrophic 

 

* Nicotinic AChR = inotrophic (na+channel)

tobacco plant

* Muscarainic AChR = metabotropic / GPCR

Mushroom 

Doesnt cross blood brain barrier 

Term
Brain Acetylcholine Circuitry 
Definition

There are a relatively small number of clusters (speaking relatively)  located in the brain stem that are the source of ACh

 

Term

Acetylcholine Esterase (AChE)

 

Definition

Breaks down Acetylcholine 

- an AchE inhibiter results in an over activity of acetylcholine 

**used as a drug for dementia 

- broken down into 

 1. Acetate 

 2. Choline 

Pieces take back up separately by reuptake transmitters and then put back together in the cell 

 

**If you inhibit acetylcholine esterase then there is TOO MUCH STIMULATION which is very poisonous 

 --> Pesticides 

Term

EPSPs

(Excitatory Post-synaptic potential)

- depolarization 

Definition

- when the channel opens, sodium or calcium flows through making the inside of the post synaptic cell more positive 

 

- if you have multiple channels opening then their effects add together add together and push the membrane close to the threshold for firing an action-potential

 

how action potentials get started  

 

Term

IPSP

(Inhibitory Post-Synaptic Potential)

-hyperpolarization 

Definition

- Does the same as the EPSP but the opposite 

- makes the inside more NEGATIVE

- uses potassium or chloride 

- moving AWAY from the threshold 

** anything that is hyperpolar is inhibitory 

Term

Glutamate 

(Glutamic Acid)

Definition

PRIMARY EXCITATORY neurotransmitter in the human brain 

- amino acid (Nh2)

- one of the building block amino acids for proteins 

 

- bonds to ca+ and na+ 

- makes inside of cell more positive and more excitatory 

 

**ionotropic glutamate receptors are CA++ and Na+ channels 

 

**makes GABA

--> all cells have glutamate 

Term

GABA

 

Definition

- Gamma-Amino-Butyric Acid 

- primary INHIBITORY nt in the human body 

- ionotropic GABA receptors are Cl- channels 

 

-pulls away from threshold of action potential and binds to Cl- 

 

**GABA is made from glutamate 

Term
Ionotropic Receptors 
Definition
FIND OUT 
Term

Metabotropic Receptors 

(GPCRs)

Definition
FIND OUT 
Term
Raphé Nuclei 
Definition

Raphé means seam 

- relatively small number of serotonin making molecules in the brain 

- ANOTHER NAME for serotonin is 

 

5- hydroxytryptamine 

Term
Peptide Neurotransmitters 
Definition

- chains of amino acids 

 

(endorphins = opioid peptides)

 

 

Term
Substance P
Definition

- First discovered in a powered perpetration of a cows stomach 

- 11 amino acids long 

- found all over the brain 

- in spinal cord and digestive system 

 

Term
Types of Neurotransmitters 
Definition

- Amino acids : glutamate , GABA, gylcine 

- Made from Amino Acids : seretonin, dopamine, norepinepherine , epinepherine, histamine

- Small Molecules : acetylchole, adenosine, ATP

- Peptides : endorphones , substance P

- Others

Term
Types of Neurotransmitter Receptors 
Definition

- Glutamate  : inototropic & GPCR

- GABA : inotorpic & GPCR

-Acetylcholine : Inotropic & GPCR

- Serotonin : Ionotropic &GPCR  (**all but one are GPCR)


Term
GPCR
Definition

dopamine 

epinepherine 

histamine

adenosine

ATP

endorphins 

substance P

** LARGEST DIVERSITY OF RECEPTORS IN THE BRAIN

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