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MCAT Biology Review 1
Molecular Biology, Cellular Respiration
61
Biology
Not Applicable
07/16/2011

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Term
Lipid
Definition

This is any biological molecule that has a low solubility in water and high solubility in nonpolar organic solvents.

 

They are hydrophobic so they make excellent barriers separating aqueous environments.

Term
Six Majors groups of Lipids
Definition

Fatty Acids

Triacylglycerols

Phospholipids

Glycolipids

Steroids

Terpenes

Term
Fatty Acids
Definition
The building blocks for most, but not all, complex lipids.
Term
Saturated Fatty Acids
Definition
Posses only single Carbon-carbon bonds
Term
Unsaturated Fatty Acids
Definition
Contain one or more carbon-carbon double bonds.
Term
Triacylglycerols
Definition

Triglycerides

 

Function: Store energy in the cell, provide thermal insulation and padding.

 

Constructed from three carbon backbone called glycerol which is attached to three fatty acids.

 

Term
Adipocytes
Definition

Fat cells.

Specialized cells whose cytoplasm contain nothing but triglycerides.

Term
Phospholipids
Definition

Function: serce as a structural component of membranes

 

A glycerol backbone but with a phosphate group replacing one of the fatty acids.

Phosphate group makes polar at one end and nonpolar at the other.

Term
Ampipathic
Definition
Polar at one end and nonpolar at the other.
Term
Steroids
Definition

Function: Regulate metabolic activity.

 

Four ringed structures that include some hormones, vitamin D, and cholesterol.

Term
Amino Acids
Definition
The building block of proteins.
Term
Proteins
Definition

Amino acids linked together by peptide bonds.

Polypeptides.

 

Only major nutrient containing Nitrogen. 

Term
Primary Structure
Definition

The number and sequence of an amino acid in a polypeptide.

 

Term
Secondary Structure
Definition

α-helix or a β-pleated sheet.

 

Contribute to the confirmation of the protein.

Term
Tertiary Structure
Definition
Refers to the three-dimensional shape formed when the peptide chain curls and folds.
Term
Forces of Tertiary Structure
Definition

1. Covalent Disulfide bonds betweem two cysteine amino acids on diff parts of the chain.

2. electrostatic interactions mostly between basic and acidic side chains.

3. hydrogen bonds.

4. van der Waal's

5. Hydrophobic side chains pushed away from water.

Term
Quaternary Structure
Definition
When two or more polypeptide chains bind together.
Term
Denatured
Definition
When the conformation of a protein is disrupted.
Term
Globular proteins
Definition
Function as enzymes, hormones, membrane pumps and channels, membrane receptors, intercellular and intracellular transport and storage, osmotic regulators, in the immune response, etc.
Term
Structural Proteins
Definition
Function
Term
Structural Proteins
Definition

Made from long polymers.

 

Maintain and add strength to the cellular and matrix structure.

Term
Collagen
Definition

A structural protein made from a unique type of helix.

The most abundant protein in the body.

Term
Glycoproteins
Definition

Proteins with carbohydrate groups attached.

 

Components of the cellular plasma membrane.

Term
Carbohydrates
Definition

Compounds made from Carbon and Water witha n empirical formula of C(H2O).

Term
Glucose
Definition
Six-carbon carbohydrate
Term
α-glucose
Definition
Hydroxy group on C1 and methoxy group on C6 are on opposite sides of the ring.
Term
β-glucose
Definition
Hydroxy group on C1 and methoxy group on C6 are on the same side of the carbon ring.
Term
Glycogen
Definition

Polymerized version of glucose.

 

Large amounts in muscle and liver cells.

(Liver regulates blood sugar so it is capable of reforming glucose from glycogen)

Term
Starch
Definition

α-Linkage glucose in plants.

Term
Cellulose
Definition

β-linkage glucose in plants.

Term
Nucleotide
Definition

Composed of a pentose sugar, a phosphate group and a nitrogenous base.

 

Form polymers to create nucleic acids (DNA, RNA)

Term
Nucelic Acid
Definition

Polymers of nucleotides that form RNA and DNA joined by phosphodiester bonds.

 

Term
Phosphodiester bonds.
Definition

Link the nucleotides together to form nucleic acid.

 

Links the phosphate group of one nt to the C3 of the pentose of the other nt to form long strands.

Term
Adenine and Thymine
Definition
Form two Carbon bonds.
Term
Cytosine and Guanine
Definition
Form 3 carbon bonds.
Term
Minerals
Definition

Dissolved inorganic ions inside and outside the cell.

 

They assist in transportation of substances entering and exiting the cell.

Term
Enzymes
Definition

Globular proteins that act as a catlyst, lowering the energy of activation of a reaction and increasing the rate of the reaction.

 

Do not alter the equilibrium of a reaction.

 

Is not consumed by the reaction.

Term
Substrate
Definition

The reactant/reactants on which an enzyme work.

 

Forms an enzyme-substrate complex.

Term
Lock-and-key theory
Definition
Explains enzyme specificity in that the active site of a substrate is specific for an enzyme.
Term
Induced Fit theory
Definition
When an enzyme binds to a substrate, both change shape upon binding.
Term
Saturation Kinetics
Definition
As the concentration of substrate increases, reaction rate increases, but at a lesser degree as the concentration continues to increase until the max rate is reached.
Term
Cofactor
Definition

A non-protein component that enzymes require to reach optimal activity.

 

Can be coenzymes or metal ions.

Term
Vitamins
Definition
Essential  organic molecules that cannot be produced by the body.
Term
Irreversible inhibitors
Definition
Agents that bind to enzymes convalently and disrupt their function.
Term
Competitive inhibitors
Definition

Agents that noncovalently bind reversibly to a substrate active site.

 

Raise the Km value but do not affect the Vmax value.

Term
Noncompetitive inhibitor
Definition

These bind noncovalently to an enzyme at a spot other than the actice site and change the conformation of the enzyme.

 

They do not affect the Km but lower the Vmax

Term
Means of enzyme regulation
Definition

1. Proteolytic cleavage

2. Reversible covalent modification

3. Control proteins

4.Allosteric Interactions

Term
Zymogen (proenzyme)
Definition

Innactive form of an enzyme.

 

Peptide bond cleavage will irreversibly activate the enzyme.

 

-ogen ending indicates that it is a zymogen.

Term
Allosteric Regulation.
Definition
The modification of the enzyme configuration resulting from the binding of an activator or inhibitor at a specific binding site on the enzyme.
Term
Negative Coopertivity
Definition

Coopertivity in the presence of the allosteric inhibitor.

Oxygen's sigmoidal dissociation curve is because of this.

Term

"-ase"

 

 

Definition

Enzyme.

Contains a nitrogen so it is subject to denaturing.

 

Term
anabolism vs catabolism
Definition
molecular synthesis vs molecular degredation
Term
Respiration
Definition

Oxidation of macromolecule constituent parts into acetyl CoA, pyruvate or other metabolites forming some ATP and reduced coenzymes. 

If oxygen is available, the metabolites go into the citric acid cycle and oxydative phosphorylation to form large amounts of energy (otherwise the coenzyme NAD+ annd other byproducts are either recycled or expelled as waste)

Term
Glycolysis
Definition

The first stage of anaerobic and aerobic respiration.

 

Series of reactions that breaks downt he 6C glucose into 3C pyruvates.

Also yields two molecules of ATP from ADP, inorganic phosphate and water, and two molecules of NADH each from the reduction of NAD+

 

Location: Cytosol

Term
Substrate Level Phosphorylation
Definition
The formation of ATP from ADP and inorganic phosphate using energy released from the decay of high energy phosphorylated compounds as opposed to using the energy from diffusion.
Term
Fermentation
Definition

Anerobic Respiration.

 

Includes glycolysis, the reduction of pyruvate back to ethanol or lactic acid, and the oxidation of the NADH back to NAD+

 

Recycling of NADH back to NAD+ 

Term
Aerobic Respiration
Definition

Respiration that requires oxygen.

Pyruvate and NADH pass through the outter membrane via facilitated diffusion.

Pyruvate is converted to acetyl CoA producing NADH nad CO2.

 

Location: Mitochondrial Matrix

Term
Kreb's Cycle
Definition

(Citric Acid Cycle, TCA Cycle)

 

Each turn of the cycle produces 1 ATP, 3 NADH, and 1 FADH2.

Term
Substrate-Level Phosphorylation
Definition
The process of ATP production in the Kreb's cycle.
Term
Electron Transport Chain
Definition

A series of proteins, including cytochrom with heme, in the inner membrane of the mitochondrion.

 

Electrons are passed down, initially oxidizing NADH, ultimately accepted by Oxygen to form water.

 

As electrons are passed down, protons are pumped into the intermembrane space for wach NADH establishing a proton gradient force that propels ATP synthase.

Term
Oxidative Phosphorylation
Definition

Production of ATP through the ETC.

2-3 ATP are produced per molecule of NADH.

 

(Also occurs similarly with FADH2, but only produces 2 ATP).

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