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Loh- Proteins 1
1st and second lectures of Proteins with Loh
28
Biology
Graduate
08/24/2016

Additional Biology Flashcards

 


 

Cards

Term
Genetic Disease
Definition
bad gene -> bad protein -> loss of function
Term
Infectious Disease
Definition
Pathogen and host protein interactions
Term
GPCR
Definition
G Protein-coupled receptors; seven transmembrane domain receptors. Signal for transduction
Term
Central Dogma of Biology
Definition
Atomic Changes in peptides -> changes in protein motifs, domains and complexes -> changes in organelles and cells -> changes in organs -> metabolic changes in organisms
Term
How do proteins become so specified
Definition
Genes: Polymorphisms-> Post Transcription modifications  -> different proteins with unique shapes according to lowest possible energy state
Term
WHAT DOES STRUCTURE INDICATE
Definition
FUNCTION
Term
Case Study: Pepzymes
Definition

Zouhair et al 1993. 

chymotrypsin, created short linkers of His-Asp-Ser catalytic triad.

Replicated and found that the triad had same kinetic K's as chymotripsin and had same inhibition

Retracted paper.

TL;DR: Importance of 3-D structure in enzyme catalysis

Term
Case Study: HIV Proteases
Definition

Many different inhibators for treatment

Lots of different active site possibilities

HIV- Protease is a homo dimer

-found aspartic acid residue, now can design tipranivir

 

 

Term
Tipranivir
Definition

Anti- HIV drug.

alters shape of activase and Protease

cleaves hydrophobic target residue (aspartic acid)

Term
Case Study: Alzheimers Disease
Definition

physical differences: smaller than a normal elderly brain.

Peptide fragent from precursor protein A-Beta 43 residue (-I-A)

peptide prevention

Term
Case Study: Cystic Fibrosis Transmembrane Conductance Regulator (CFTR)
Definition

change in 1 phenylalanine= fatal

a change in 1 AA can cause death

Causes folding errors = loss in >30% protein functioning

 loss of stability  = 75% monogenic disease

Term
Why are proteins unstable
Definition

they don't always look how they are presented.

they fold and un-fold many times.

one state may be favored over another.

Term
ΔG =0
Definition

0 kcals

half folded and half un-folded

Term
Amino Acid Structure
Definition
[image]
Term
Peptide bond Formation
Definition
[image]
Term
Polypeptide
Definition
[image]
Term
3-D structure factors
Definition

1. Geometry- partially planar polar bonds

2. Chemical nature of peptide bonds

 

Term
Alanine
Definition

Ala, A 

[image]

Term
Arginine
Definition

Arg, R

[image]

Term
asparagine
Definition

Asn, N

[image]

Term
Aspartic Acid
Definition

Asp, D

[image]

Term
Cytesine
Definition

Cys, C

[image]

Term
Glutamine
Definition

gln, Q

[image]

Term
glutamic acid
Definition

glu, E

[image]

Term
glycine
Definition

gln, Q

[image]

Term
histidine
Definition

His, H

[image]

Term
isoleucine
Definition

ile, I

[image]

Term
Leucine
Definition

leu, L

[image]

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