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bad gene -> bad protein -> loss of function |
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Pathogen and host protein interactions |
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G Protein-coupled receptors; seven transmembrane domain receptors. Signal for transduction |
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Atomic Changes in peptides -> changes in protein motifs, domains and complexes -> changes in organelles and cells -> changes in organs -> metabolic changes in organisms |
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How do proteins become so specified |
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Genes: Polymorphisms-> Post Transcription modifications -> different proteins with unique shapes according to lowest possible energy state |
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WHAT DOES STRUCTURE INDICATE |
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Zouhair et al 1993.
chymotrypsin, created short linkers of His-Asp-Ser catalytic triad.
Replicated and found that the triad had same kinetic K's as chymotripsin and had same inhibition
Retracted paper.
TL;DR: Importance of 3-D structure in enzyme catalysis |
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Case Study: HIV Proteases |
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Many different inhibators for treatment
Lots of different active site possibilities
HIV- Protease is a homo dimer
-found aspartic acid residue, now can design tipranivir
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Anti- HIV drug.
alters shape of activase and Protease
cleaves hydrophobic target residue (aspartic acid) |
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Case Study: Alzheimers Disease |
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physical differences: smaller than a normal elderly brain.
Peptide fragent from precursor protein A-Beta 43 residue (-I-A)
peptide prevention |
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Case Study: Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) |
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change in 1 phenylalanine= fatal
a change in 1 AA can cause death
Causes folding errors = loss in >30% protein functioning
loss of stability = 75% monogenic disease |
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Why are proteins unstable |
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they don't always look how they are presented.
they fold and un-fold many times.
one state may be favored over another. |
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0 kcals
half folded and half un-folded |
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1. Geometry- partially planar polar bonds
2. Chemical nature of peptide bonds
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