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key terms
174
Microbiology
Undergraduate 1
05/19/2011

Additional Microbiology Flashcards

 


 

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Term
An organism capable of causing disease.
now showing increase drug resistance; new dieseases are emerging (ones that were once thought harmless are causing diseases under certain circumstances
Definition
Pathogen
Term
The process involved in the development of a disease.

(how it make syou sick/ the way it makes you sick)
Definition
Pathogenesis
Term
Microorganism that lacks a cell nucleus and membrane-enclosed organelles. All bacteria are
no organelles- all bacteria is this
Definition
prokaryotes
Term
An extrachromosomal piece of DNA that is small and circular and replicates independently. It can be transferred to another cell.
Definition
Plasmid
Term
Sections of the genome that include groups of genes coding for virulence factors that increase the pathogenicity of a microorganism
Definition
Pathogenicity islands
Term
Ingestion of materials into cells by means of vacuole formation.
can be used to defend against infection- but pathogens have found a way to defeat it
Definition
Phagocytosis
Term
The taking in of small molecules by invagination of the cell membrane.

to capture something
Definition
Pinocytosis
Term
The major component of bacterial cell walls.
Definition
Peptidoglycan
Term
The space between the cell membrane and the outer membrane in Gram-negative bacteria.
Definition
Periplasmic space
Term
The shrinking of a cell as a result of changes in the osmotic concentration resulting from loss of water in a hypertonic solution.
Definition
Plasmolysis
Term
An extrachromosomal piece of DNA that is small and circular and replicates independently. It can be transferred to another cell.
Definition
Plasmid
Term
A waxy substance found in the cell wall of certain bacteria, such as the genus Mycobacterium.
Definition
Mycolic acid
Term
The study of factors and mechanisms involved in the spread of disease within a population.
Definition
Epidemiology
Term
Part of the pathology seen when host defenses kill virally infected cells.
Definition
Cytocidal effect
Term
Resident or transient microorganisms that do not ordinarily cause disease but can do so under certain circumstances.
Definition
Opportunistic pathogen
Term
A process that uses naturally occurring or genetically engineered microorganisms to transform harmful substances into less toxic or nontoxic compounds.
Definition
Bioremediation
Term
An industry that uses molecular biology and microorganisms for specialized purposes, including genetic engineering
Definition
Biotechnology
Term
A bacterium that uses oxygen for metabolism but shifts to anaerobic metabolism when oxygen is no longer available.
Definition
Facultative anaerobe
Term
It involves the binding of a non-competitive inhibitor to a site on the enzyme molecule that causes a change in the shape of the active site and inhibits the binding of the substrate in the active site.
Definition
Allosteric inhibition
Term
An organic molecule bound to or associated with an enzyme.
ex: NAD and FAD
Definition
coenzyme
Term
microbiology affects every facet of life and is (everywhere)
Definition
ubiquitous
Term
study of small living things; microorganisms/ microbes
Definition
microbiology
Term
many bacteria and some fungi are part of ___________:

-naturally colonize skin and mucosal surfaces
-most of the time harmless
some provide important product & svcs to the body
Definition
normal microflora
Term
majority of majority are nonpathogenic:
____________ (where you should be)
beneficial microorganisms
used in food production or bioremediation
part of food chain
necessary to maintain life om earth oxygen production (produce more oxygen than plants)
Definition
indigenous microflora
Term
normal bacteria move t oa place in the body where they are not particulary found.
ex: E.coli in large intestines-part of normal flora__> if it travels throught the urethra, it becomes pathogenic, resulting in urinary tract infection
Definition
oppurtunistic infection
Term
pathogens are classified by the ______________- they use:

air, food, water, insect vectors, person to person contact
Definition
host defenses
Term
governs survival and growth microorganisms;serves chemical processes living in organisms
used to obtain energy
linked to growth
Definition
metabolism
Term
happens in 3 ways:
competative inhibition
alloseteric inhibition
feedback inhibition
Definition
enzyme inhibition
Term
helper susbtrates that are non protein organic molecules
Definition
coenzyme
Term
helper substrates that are non-protein organic molecules
Definition
cofactor
Term
glycolysis makes
Definition
glucose ------> 2 pyruvate
2 ATP produced
Term
prep step makes
Definition
2 pyruvate --> 2 ACETYLCoA) 2 ATP produced
Term
krebs cycle makes
Definition
Acetyl CoA ---> (NADH & FADH2)
2 ATP
Term
Electron transport chain makes
Definition
NADH & FADH2 ---------> 32 ATP
36 ATP for every one molecule of glucose
Term
catabolic pathway used by most organisms
occurs in the cytoplasm (needs no O2)
4 ATP moleculs produced here
1st steps of pathway consumes 2 aTP
NAD becomes NADH
Definition
glcolysis
Term
C6H12O6 + 6O2 ---> 6CO2 + 6H20 (36ATP + ENERGY)
Definition
cellular respiration formula
Term
ACETYL COA CAN ENTER
series of redox reactions
h atoms are transferred to coenzyme carriers
H atoms are carried by NAD & FAD to ETC C is oxidized into CO2
electrons transferred to carriers
energy is captured and restored when ADP is converted to ATP
Definition
krebs cycle
Term
Definition
Prep step- Acetyl- CoA
Term
in eukaryotes found in the inner mitochondrial membrane
in prokaryotes organized int he plasma membrane
electrons trasferred to find electron receptor
energy and captured and restored
Definition
ETC
Term
e- move from one molecule to another in chain and energy is released
** e- tranferred along ATC, protons pumped out- causes proton outside of cell to be higher than the cell, causing concentration gradient to form
Definition
Chemiomosis
Term
enzymatic breakdown of carbs in which final e- acceptor is organic molecule
ATP synthesized by subtrate level phospharylation but not linked to ETC
yields 2 molecules of ATP per glucose molecule
diff microoraganisms use diff pathways
by products are usually acids or alcohol
Definition
fermentation
Term
bacteria: size shape arrange,arrangehment- most common
Definition
bacillus- rod shaped
coccus- circular shaped
spirilla- spiral shaped
Term
bacteria (arrangement can be)
Definition
single: bacillus- coccus
diplo: bacillus - coccus
strepto: bacillus- coccus
staphylo: cocus only
tetrad: coccus only
)staphylococcus will never detach; will always detach towards each other- go w/ majority)
Term
stain the organism
Definition
to visulize bacteria must be stained: positive stains
Term
has organelles
people, animals, plants and some fungi
Definition
eukaryote
Term
whats the difference
gram positive
gram negative
gram variable
gram nonreactive
Definition
what we use in the lab
lab
some look + and -
will not hold stain
Term
stain using only one color (everything is that color)
Definition
simple stain
Term
stain using more than one color (multiple colors each color tells you something about the bacteria)
Definition
differential stain
Term
takes advantage of cell walls of bacteria; and is divided into 4 groups: gram positive
gram negative
gram variable
gram nonreactive
Definition
gram staining
Term
small tough dormant structure that can form in certain bacteria (heat is neede to make wall permeable to stain)
Definition
endospore
Term
bacteria grown in aggregated ssemblies w/in their host
Definition
Biofilms
Term
3 ways it operates w/ in cell
pinocytosis
phagocytoses
receptor-mediated _______
Definition
endocytosis
Term
Definition
bacteria/ prokaryotes
Term
Definition
cell wall
Term
Definition
teichoic acid
Term
Definition
lipopolysaccharides
Term
Definition
porins
Term
Definition
M protein
Term
Definition
M protein
Term
Definition
lipid A
Term
Definition
O polysaccarides
Term
Definition
glycocalyx-slime layer
Term
Definition
glcocalyx/ capsule
Term
Definition
fimbriae/pili
Term
Definition
axial filaments
Term
Definition
flagella
Term
Definition
mono-, amphi-, lopho-, peritrichous flagellar configurations
Term
Definition
plasma membrane
Term
Definition
osomotic lysis
Term
Definition
hypertonic
Term
Definition
hypotonic
Term
Definition
isotonic
Term
Definition
passive transport
Term
Definition
simple dffusion
Term
Definition
facilitated diffusion
Term
Definition
active transport
Term
Definition
nuclear region
Term
Definition
ribosomes
Term
Definition
inclusion bodies
Term
Definition
endospores
Term
Definition
microbial growth
Term
Definition
binary fission
Term
Definition
budding
Term
Definition
phases of growth- lag
Term
Definition
phases of growth- log
Term
Definition
phases of growth- stationary
Term
Definition
phases of growth- decline
Term
Definition
factors of growth- ph
Term
Definition
factors of growth- temperature
Term
Definition
factors of growth- moisture
Term
Definition
factors of growth- nutrient availability
Term
Definition
all of the philes (ex halophile, barophiles...)
Term
Definition
sodium thyoglycolate
Term
Definition
fastidious
Term
Definition
defined media
Term
Definition
undefined media
Term
Definition
complex media
Term
Definition
agar
Term
Definition
selective media
Term
Definition
defferential media
Term
consist of:
viruses, archaens, protozoa, bacteria, some algae, some fungi
Definition
microorganisms
Term
majority of microbes are
Definition
non pathegenic
Term
potential of a pathogen to cause a disease
flu- low HIV- high
Definition
degree of virulence
Term
only a small fraction of these cause infection
Definition
microorgansims
Term
only a fraction of _______ affect humans
Definition
pathogens
Term
epidemiology
pathogenesis
host defense
Definition
pathogens in 3 perspectives
Term
are vital to care for infected individuals:
allows for implementation of strategy
helps understand spread of disease
Definition
knowing how an organism gets in and out are
Term
caused by variety of factors\-pooor socioeconomic conditions
poor
ignorence of how infection occur
poor hygiene
natural disaters
Definition
epidemics:
Term
required for pathogens to do the following (any physical factors of organisms):
persistence in patient
cause disease
escape or defeat host defenses
Definition
virulence factors
Term
infection and complex competitive struggle:

pathogens vs. __________outcome depends on success or failure of host
failure of host defense = failure (sickness)
Definition
host defenses
Term
2 types:
innate and adaptive immune response
Definition
host defenses
Term
1st line of defense \
nonspecific response
involves a variety of cellular and chemical factors
Definition
innate immune respose
Term
lethal and specific
has memory
(vaccinations, antibodies, stuff u get from your mom)
Definition
adaptive immune respose
Term
some directly attack host defenses (HIV)
some change their look (camoflauge)
some hide where they cant be caught-like in the brain- too dangerous for the brain so it swell or try to fight off infection
Definition
many pathogens have developed methods to defeat host defenses
Term
treatment of infectious diseases:
many potent and successful tools available in defeating infections
Definition
antibiotics
disinfectants
antiseptics
Term
are toxic chemicals and therefore must act selectively- they must kill the disease not harm the patient
Definition
antibiotics
Term
are intracellular parasites, so either:
has to be attacked before entry to host cell, or
inffected host cells must be killed to kill virus
Definition
viruses
Term
disinfection water supply
monitoring food supply
proper waste water removal
insect/ pest control (vectors)
proper hygiene/ sanitation
Definition
prevention in public health measure and communinty
Term
public health control of immunization of children
design/development of new vaccines
ability to ensure safety of vacines
Definition
immnunization requires
Term
are very benificial to humans:
recycle vital elements in soil
convert elements in environment into usuable form
return CO2 into the atmosphere
Definition
some microbes
Term
microbes are used to :
recycle waste during sewage treatment
cleanup, decontaminate
Definition
bioremidiation
Term
growth of ________ can have direct effect on infectious diseases
carbon and energy required for growth
Definition
microorganisms
Term
carbon from inorganic substances (usually plants)
Definition
autotrophy
Term
carbon obtained from organic substances usually plants
Definition
heterotrophy
Term
nearly all infectious organelles are this. obtain enrgy from breaking down other organic molecules and compunds (carbs and energy from what we eat)
Definition
chemoheterotrophs
Term
molecules broken down into smaller ones to release energy
involes transfer & oxidation reduction reactions)
Definition
catabolism
Term
energy from catabolism used to build large organic molecules from smaller ones
(involes transfer & oxidation reduction reactions)
Definition
anabolism
Term
metabolism that can use oxygen but can occur w/out it- as needed- can survive- survives by partaking between anaerobic and aerobic
Definition
falcutative anaerobic resp
Term
A -> B-> C-> D -> E
initial final
subtrate end
product


(-> = enzymes)
each step is mediated of facilitated by a specific enzyme)
Definition
metabolism occurs in 2 pathways
Term
____ enzymes always degrades proteins b/c it is the only rx w/ peptide bonds
Definition
proteolytic enzymes
Term
binding of competitor is reversible & dependent upon relitive #s of inhibitor molecules & substrate molecules
Definition
competitve inhibition
Term
can break hydrogen bonds and denature protiens/ can change shape of molecules in motion
Definition
factors that affectenzyme rx:
temperature
Term
can break hydrogen bonds and change shape
Definition
factors that affectenzyme rx:
pH
Term
of substrate, product, and enzyme - lower #'s of substrate product and enzyme molecules means lower level of activity
Definition
factors that affectenzyme rx:
concentration
Term
fuels enzyme inhibition
recycled molecule that phosphates are added & removed
phosphate bonds are high energy bonds that require energy to be made and release energy when broken

ADP -----------> ATP over and over
Definition
catabolic processes
Term
4 most important pathways by which most molecules release energy from nutrient molecules
Definition
glycolysis
prep step
kreb's cycle
electron transport chain
Term
cellular respiration formula
Definition
C6H12O6 + 602 ------> 6CO2 + 6H20 (36ATP = ENERGY)
Term
in aerobic respiration the final electron acceptor is oxygen in anaerobic
Definition
molecules like nitrates are the final electron receptor
Term
specific membrane. proteins allow proteins to enter
energy released as protons reenter the cell
energy used to bind phosphates to ADP making high energy molecule ATP
different proton in concentration in the process is called proton motion force
Definition
Chemiomosis
Term
classified as biosynthetic rx b/c they are used to synthesize all biological molecules needed by cells or living organisms
Definition
anabolic rx
Term
form network of pathways that produce components required by cell for growth and survival
both rx fueled by energy stored in high energy bonds in ATP
Definition
biosynthetic rx
Term
stain the background
Definition
negative stain
Term
procedure of gram staining
Definition
apply crystal violet stain rinse
add gram iodine (maordant- sets color & male permenant); drain rinse
decolorize w/ alcohol; wash immed w/ water
apply saffrin dry rinse blot
Term
formation involes getting copy of genetic information w/ other important chemicals and elclosing the collection inside tough coating
Definition
endospore
Term
bacteria that cab undergo ________ are diff to neutralize b/c endospores are extremely resistant to antieptics, disinfectants, antibiotic
they form bacteria in distress; lies dormant and organsims can return to endospore state to vegestative state thru germenation
Definition
sporalation
Term
bacteria that cab undergo sporalation are diff to neutralize b/c _______ are extremely resistant to antieptics, disinfectants, antibiotic
they form bacteria in distress; lies dormant and organsims can return to _____ state to vegestative state thru germenation
Definition
endospores
Term
depend on:
ability to invade/ overcome host defense
ability to increase in #s
ability to identify transmission mechanisms to get new host " go for th and prosper
Definition
pathogen interactions
Term
depend on having useful functioning defenses (skin)
suceptibility to infection (immune system/ vaccinations)
degree of comprimise found w/in host immune system (what your immune system will let go of if its working on something else HIV lupus etc)
Definition
host interactions
Term
can be transferred between cells
are extrachromosonal pieces of DNa
serve no purpose so they look for somehting to do caus ehteyre extra
they can carry drug resistance, how to create tumors
info not necessary for survival
Definition
plasmids
Term
process of tranfer of plasmids
Definition
cojugation
Term
based on population densities; process of organisms seeing their environement using speacial sensing proteins
Definition
quorum sensing
Term
w/ quorum sensing, certain __ only turn on when there are enough cells present

ex: enterotoxin production in salmonella
Definition
genes
Term
are clinically important because:
capture/ retain nutrients (allowing continued growth)
impede uptake of antibiotics/ disenfectants (kinda just sit on the surface- takes a while to penetrate bacteria)
Definition
biolfilms
Term
can build up on medical devices (cause plaque to build up on teeth)
more harmful than helpful to us
Definition
biofilms
Term
eukaryotic cells are found in humans and are involed in infection. many of their structures play a role in infection:

viruses gain entrance by infecting a host cell that has a specific receptor located on the membrane
these viruses are normally found on the cell surfaces: respitory system very suseptible to influenza
Definition
plasma membrane
Term
eukaryotic cells are found in humans and are involed in infection. many of their structures play a role in infection:

is where individual viral particles are hosted and manifested
Definition
cytoplasm
Term
microfilaments, intermiadiate filaments, microtubules
(collectively known as)
Definition
cytoskeleton
Term
larger than micro, made up of keritans, provide additional strength, and involved with positioning cells alongside other tissues
Definition
intermediate filaments
Term
hollow tubes made up protein tubulin,largest of the 3, found in cilla and flagella seen on some eukary cells, involved w/ movement of other structures in cytoplasn, particular chromosomes during mitosis and meiosis
Definition
microtubules
Term
eukaryotic cells are found in humans and are involed in infection. many of their structures play a role in infection:
uses ot like a subway- to move across cells or to other cells using already made attachmenrts in the cytoskeloton
Definition
cytoskeleton
Term
eukaryotic cells are found in humans and are involed in infection. many of their structures play a role in infection:

involved infection strategy of pathegons in host defense
ciliated cells work w/ mucus secreting cells to remove foreign materials, such as, microorganisms, there by preventing stay in requirement of pathogen
Definition
cilia
Term
eukaryotic cells are found in humans and are involed in infection. many of their structures play a role in infection:

shigella use dto move laterally between insterstial cells
also affects phagocytosis, vey important host defense mechanism
Definition
cytoskeleton
Term
eukaryotic cells are found in humans and are involed in infection. many of their structures play a role in infection:

as in pertussis or diphtheria, pathogens attach to cilated cells initially
cough sneze response will go away of attacked, or be overactive- but unproductive
Definition
cilia
Term
eukaryotic cells are found in humans and are involed in infection. many of their structures play a role in infection: \anchored in plasma membranse; uses complex sequence rx- this action moves flagellum amd permitts whip like motion seen in flagella found on euk cells
Definition
flagella
Term
in many viral infections, viral particles acquires part of the host ___________ as particles leave the infected host- this piece of membrane wraps around the host and is referred to as viral envelope which is important in infection of new host cells and in protection from host defense
Definition
plasma membrane
Term
eukaryotic cells are found in humans and are involed in infection. many of their structures play a role in infection:

not bound by membrane
involved in viral infection and taken over by virus
not involved directly by treatment process but have a role in treatment b/c bacterial ribosome is one of the targets attacked by certain antibioticcs- so invading bacturim can nolonger make proteins and dies
viruses hijack _________, then make new viruses
Definition
ribosomes
Term
eukaryotic cells are found in humans and are involed in infection. many of their structures play a role in infection:

where ATP is made- more cells working, fewere resting w/ in
contian own ribosomes and DBA
ficture very similar to bacteria; similar mechanism of ATP production
Definition
mitochondria
Term
eukaryotic cells are found in humans and are involed in infection. many of their structures play a role in infection:

moves synthesized material to golgi or directly to plasma membrane for transport out of the cell
site of synthesis of assembly of viruses
also assoc w/ adaptive immune response
Definition
ER
Term
eukaryotic cells are found in humans and are involed in infection. many of their structures play a role in infection:

modifying- packaging products from ER; renewing plasma membrane; prod lysosomes
Definition
golgi
Term
organisms responisble for destroying invading microorganisms and any other foreign material in cell - have pivitol role in phago cytosis
Definition
lysosomes
Term
eukaryotic cells are found in humans and are involed in infection. many of their structures play a role in infection:

organelles composed of ring structures stacked together
fx in degradqation of proteins trigger adaptive immune response against pathogen
Definition
proteansome
Term
eukaryotic cells are found in humans and are involed in infection. many of their structures play a role in infection:

recycle any host-cell components that are no longer needed or fx properly
any ihibition of ___________al fx can be a lethal event
invading pathogens put a capsule on themselves (or hide from it) it then form a vesicle and fuses w/ its membrane and its enzyme destroys pathogen
Definition
lysosomes
Term
eukaryotic cells are found in humans and are involed in infection. many of their structures play a role in infection:
RNA uses nuclear membrane pores to move cytoplasm
particularly important in viruss that contain DNA
viral DNA must enter host _____; then copies are made here, then moved into the cytoplasm to be used for construction of new virus molecules\in some cases becomes latent in host _________
Definition
nucleus
Term
eukaryotic cells are found in humans and are involed in infection. many of their structures play a role in infection:

many pathogens enter through formation of vesicles
method provide protection against host response
some pathogens bind to host cell receptors that triffer endocytosis: common in viruses
Definition
endo/ exocytosis
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