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Introduction
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34
Biochemistry
Graduate
09/13/2011

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Term
Life
Definition
Intangible property that is usually defined in operational terms
Term
Complex/Dynamic Life
Definition
thousands of chemical rxns in which cast number and variety of molecules interact to react
Term
Organized/Self-Sustatining Life
Definition
atoms--> molecules--> macromolecules--> supramolecular complexes/metabolons--> organelles--> cells--> etc
Term
Cellular Life
Definition
a bag of chemical rxns surrounded by a membrane that keeps the in in and the out out and allows for communication with the external environment
Term
Information-Based Life
Definition
linear structure of a gene contains the information for the three dimensional structure of a protein that interacts with other cellular components by structural complementarity
Term
Adaptive Life
Definition
evolves-mutations that increase an organisms ability to efficiently utilize energy and reproduce have an advantage
Term
3 requirements for cells to survive
Definition
Precursors, Energy, and Information
Term
Precursors
Definition
a substance from which another is formed
Term
Vitalism
Definition
only the vital force of life could synthesize and utilize organic molecules
Term
Friedrich Wohhler 1828
Definition
Synthesized Urea by heating inorganic compound silver cyanate with ammonium chloride
Term
Buchner Brothers
Definition
demonstrated that cell free listed of yeast cells could ferment sugar to ethanol- debunked vitalism
Term
Emil Fischer
Definition
described the role of enzymes as catalysts for the chemical rxns that occur within cells
Term
Pehr Edman
Definition
developed method for determining the amino acid sequence of proteins
Term
Biopolymers
Definition
macromolecules in which multiple small molecules, monomers, are covalently linked by cellular machinery to form large complex molecules
Term
Proteins
Definition
largest group of biopolymers. Linear polymers of the twenty naturally occurring amino acids
Term
Nucleic Acids
Definition
Second largest group of biopolymers in terms of mass
Term
Polysaccharides
Definition
third in abundance within cell. Polymers of simple sugars, the monosaccharides.
Term
Homopolymers
Definition
composed of only one monsaccharide, usually structural elements within plant cells and energy storage in all cells
Term
Heteropolymers
Definition
made up of a mixture of different monosaccharides: usually serve as recognition signals
Term
Lipids
Definition
Smallest group of biopolymers within cells, however very divers. Polymers made from a few simple precursors. serve as energy depots within plants and animals and a major component of membranes
Term
London Forces/Induced Dipole Interactions
Definition
weakest of the noncovalent interactions. as molecules continue to approach each other the dipoles between hem grow stronger. these induced dipoles continue to pull the molecules together until their individual electron clouds begin to overlap and repel each other.
Term
Hydrophobic Interactions
Definition
Nonpolar, hydrophobic molecules do not interact with water, but with each other. Large biopolymers with regions of hydrophobic structure will fold upon themselves bringing these hydrophobic regions into close contact with each other and isolating them from the bulk water of the cell. Stabilized by london forces after folding
Term
Dipole-Dipole Interactions
Definition
when a very electronegative element binds to a loess electronegative element the bonding electrons are shared unevenly between the atoms and a permanent dipole is established. Polar groups, when in close proximity will be attracted to each other
Term
Van Der Waals Interactions
Definition
London Forces, Hydrophobic Interactions, and Dipole-Dipole Interactions. Strongest when the participating atoms or functional groups are separated by their Van der Waals Radii
Term
Hydrogen Bonds
Definition
Form between a hydrogen atom covalently bonded to an electronegative atom and a second electronegative atom that serves as the hydrogen bond acceptor
Term
Electrostatic Interactions (Ion Pairing Interactions, Salt Bridging)
Definition
Biopolymers with ionizable groups of opposite charge in close proximity will be attracted to each other
Term
Supramolecular Complexes
Definition
Formed when biopolymers interact with one another
Term
Cell is ___% Water
Definition
&0%. All rxns of biochemistry occur within aqueous environment. Can form a maximum of 4 hydrogen bonds with other water molecules "ice" liquid water forms an average of 2.5 bonds
Term
Solvation/Hydration
Definition
Ions are solvated and Polar molecules are hydrated.
Term
Ion-dipole interactions
Definition
how water solvates ions
Term
dipole-dipole interactions
Definition
how water hydrates polar molecules
Term
Clathrate
Definition
forms when water interacts with non-polar hydrophobic molecules, surrounds the hydrophobic molecules shielding them from the bulk water
Term
Spontaneous RXN
Definition
-ΔG, -ΔH, increase in ΔS
Term
Nature always moves toward _______ energy and _______ entropy
Definition
minimum, maximum
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