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Introduction to Molecular and Cellular Biology
Midterm Study Notes F13
135
Biology
Undergraduate 1
10/22/2013

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Cards

Term

 

 

What are the Basic Properties of Cells?

Definition

 

 

  • Higly complex and organized
  • Maintain and Utilize a genetic program
  • Reproduction(generation of daughter cells
  • Acquire and Utilize energy 
  • Support Enzyme-catalyzed chemical reactions
  • Engage in mechanincal activity
  • Respond to stimuli
  • Sustain Self-Regulation
  • Evolve
Term

 

 

 

Cells are Highly Complex and Organized,

How?

 

Definition


-Contain a large number of parts

-Organized with respect to time and space

-Parts interact with little tolerance for error

-fidelity of interactions is maintained by control and regualation of parts

 

  • provides precision in cellular activities

 

Term

 

What are the main differences between Prokaryotes and 

Eukaryotes?

Definition

 

1)Prokaryotes                        2) Eukaryotes

 -bacteria                               -protists, fungi, plants, 

-Structurally Simple                   animals

                                             - Structually complex 

Term

 

 

Nuclear Pore Complex

Definition

 

Enables the movement of molecules in and out of the the nucleus

Term
What are the basic Properties of Cells
Definition
Term

 

 

 

What is a viron?

Definition

A virus that exists outside the cell as an inanimate particle. 

Virons are able to invade the cell.

 

Comprised of:

- Small amopunts of DNA and RNA

-Protien Capsule (capsid)

Term

 

Your roomate seezes on you. You inhale virons. What happens when one of these virons causes a lytic infection in your pper respiratory tract.

Definition

Lytic: production of virus particles rupture (and kill) cell.

 

The viron enters the cell through a specific receptor, inserts genetic materialinto the cell, assembles virus like cell, ruptures and kills the cell. 

 

 

 

 

Term

 

What are the functions of the biological membrane? 

Definition
  • Cell Boundary
  • Define/enclose compartments
  • Control movement of materialinto/out of cell
  • Allow response to external stimuli
  • Enable interactions between cells
  • Provide scaffold for biochemical activities
Term

 

 

Amphipathic 

 

 

Definition

 

-Amphipathic: a molecule (protein) that contains hydrophobic and hydrophillic parts

 

 

Term

 

 

a) The term ....... means water loving, it is also said to be.....

 

b) The Term ..... means water hating, is is also said to be.......

 

Definition

 

A) i) Hydrophillic ii) Polar 

 

 

B) Hydrophobic ii) Non-polar

Term

 

 

 

Concerning Biological membranes, which statment is true?

a) contain amphipathic lipids

b) contain lipids

c) hydrophobic components (only) 

d) static structures

Definition

 

 

 

a) contain amphipathic lipids

Term

 

 

 

What is the Fluid Mosaic Model?

Definition

 

-Contain a hydrated lipid bilayer of amphipathic lipids

-Proteins: Integral

                 Peripheral

                       Lipid-anchored

 

Components are mobile and can interact

 

 

Term

 

 

Describe the Structure of Biological Membrane

 

 

Definition

 

-Stable (non-static) 

-Flexible

-Capable of self assembly--> driven by hydrophobic interactions.

 

-different membranes contain different types of lipids and proteins.

 

-The inner membrane of mitochondria contains a high concentration of protein.

 

 

Term

 

 

 

 

Definition
Term

 

 

 

Why does the inner mitochondrial membrane have high concentrations?

Definition

 

 

 

 

Gives opportunity for a variety of structures and functions.

Term

 

 

 

Myelin Sheath

Definition

 

 

 

A modified plasma membrane structure providing insulation for the conduction of electrical impulses.

 

The myelin sheath of a neurin contains very low amounts of protein. This structure consists of layers of plasma membrane wrapped around the nerve axon.

Term

 

 

What are the three classes of membrane protein? Describe them. 

Definition

 

  1. Integral protein: goes through the lipid bilayer, usually ampipathic.
  2. Peripheral protein: doesn't go through a membrane, connects with integral protein, phospholipid bilayer or both. Usually polar since they are hydrophobic.
  3. Lipid-anchored: Connected to phospholipid bilayer or anyother lipid in the membrane. 
Term

True or False?

 

1) All membranes are the same

2) The leaflets that make up the bilayer are symmetrical 

3) The components of a membrane are mobile and interact

Definition

 

 

1) False, they are all different

2) False, they are assmetrical

 

3) true

 

Term

 

 

 

 

What factors affect fluidity?

 

Definition

The type of lipid membrane:                                            -Unsaturated=increase fluidity

(more fluidity=more mobile)

-Saturated=decrease fluidity



The temperature: 

-Warming=increase fluidity

( Liquid crystal state)


-Cooling=decreases fluidity

(Crystalline gel-rigid)

Term

 

 

 

Why is membrane fluidity crucial to cell function?

Definition

 

  • Must be maintained
  • In response to change in temperature, lipid composition of membranes can be changed by    

    1) Desaturation of Lipids   2) Exchange of Lipid chains

  • Balance between ordered (rigid) structure and disordered structure allows: 

-mechanical and flexibility 

-dynamic iteractions between membrane components

-membrane assembly and modification

Term

 

True or False:

 

Cholesterol does not regulate membrane fluidity.

Definition

 

 

False.

 

Cholesterol does regulate membrane fluidity.

 

  • Alters packing and flexibility of lipids
  • If added to liquid crystalline membrane:             fluidity will decrease
  • If added to a crystaline gel membrane fluidity will increase
Term

 

 

 

 

What are lipid rafts?

Definition

 

 

 

areas of the plasma membrane that are enriched with certain types of lipids. (i.e.,cholestrol)

 

- relatively rigid

- some membrane proteins accumulate in rafts.

-form a 'functional compartment'.

Term

 

 

 

Are biological membranes dynamic? 

Definition

 

yes. 

 

  • Lipids move easily,laterally, within leaflet.
  • Lipid movement to other leaflet is slow.
  • membrane proteins can diffuse within bilayer

 - protien movemnt is restricted

- some proteins do not move

- rapid movement is spatially limited

-long range diffusion is slow 

-biochemical modification can dramatically changeproteins mobility in a membrane

(part of signal transduction) 

Term

Which of the following compounds will move unassisted across a membrane?

a) Glucose

b) CO2

c) Na+

Definition

 

b) CO2

Term

 

 

 

 

Simple Diffusion

Definition

 

 

 

- very small molecules

- uncharged

- down a concentration gradient (uphill)

 

Term

 

 

 

 

Diffusion through a channel

Definition

 

-small charged molecules (ions)

 

- Down a concentration gradient

 

ex/only going to occur when moving from high to low gradient.

Term

True or false:

 

1) Ion channels are selective, allowing only one type of ion to pass. (semi-permeable)

 

2) Ions move up a concentration gradient.

3) Channels are often 'gated'(can be open or closed)

 

 

4) Ion channels are formed by peripheral membrane protiens that line an aqueous pore.

Definition

1) True

2) False, Ions move down a concentration gradient.

 

3) True.

 

4) False, Ion channels are formed by integral membrane protiens that line an aqueous pore.

Term

 

 

 

 

List and Describe the 3 types of gated channels.

 

1) 1) Voltage-gated channels (ex/KChannel) 

Definition

 

 

 

1) Voltage-gated channels (ex/KChannel) 

-Channel responds to changes in charge across a membrane, causing channel to open, peptide binds, channel closes.

 

 

Term

 

 

 

 

Ligand-gated channels (CFTR)

Definition

 

 

 

 

-Channels respond to binding of a molecule 

(ligand)

Term

 

 

 

Mechano-gated channels

Definition

 

ex/ cation channels in inner ear

 

- Channels respond to physical force on membrane

 

(ex/ stretch)

Term

 

 

 

Facillitated diffusion

Definition

 

 

  • Compund binds specifically to integral membrane protein called facilitative transporter.
  • Change in conformation of membrane allows compound to be released on other side of membrane.
  • Compound moves down concentration gradient
Term

 

 

 

 

 

Active Transport

Definition

 

  • Compounds bind to integral membrane protein called active transporter

  • Change in conformation of transporter allows compound to be released on other side of membrane
  • Compound moves up the concentration gradient.
  • Requires input of energy.
Term

 

 

 

 

List and Describe the process of active transport used by Na+/K+ ATPase.

Definition

-Na+/K+ ATPase is the transporter responsible for maintaining cytosolic concentrations of Na+ and K+ 

 

- 3 Na+ and ATP bind to the transporter inside the cell (E1 Conformation) 

-ATP is hydrolyzed and ADP is released; transporter shifts to E2 conformation.

- 3Na+ are releasedout of cell, 2K+ bind outside of the cell. 

-Phosphate group is released

-ATP binds, Protein shifts back to E1 conformation and 2K+ ions are released in cell.  

Term

 

Which process requires energy?

 

a)Movement of Na+ through a voltage gatedNa+channel 

b) Movement of Owithin a cell

c)Proton pump on the inner mitochondrial membrane

d) Glucose transport into/out of our cells


Definition

 

 

c)Proton pump on the inner mitochondrial membrane



Term

True or False:

1)Diffusion through a channel is a type of mediated transport.

 

2) Facillitated diffusion is a form of active transport

 

3) The glucose transport into and out of our cells ivolve a conformational change in the transporter itself. 

4) The Na+ / K+ pump requires ATP for the directional movement of Na+ and K+ 

Definition

 

a) False: These channels can be gated through non-mediated transport because there is an interaction between transport mediator, not directly working with the molcule (Simple difusion b/c it is non-polar and uncharged) 
b) False: Facillitated diffusion is a form of passive transport. c) True, it is faccilitated transport. d) True
Term

 

 

 

The Extracellular Space

(outside of ECM)

 

i)What is the glycolcalyx ?

ii)why is it important to the cell?

Definition

 

 

i) An assembly of carohydrate groups attached to protiens and lipids on the outside of the plasma membrane.

 

ii) - it mediates cell-cell and cell-ECM interactions

-provides mechanical protection

-serves as a barrier to some particles

-binds regulatory factors

 

Term

 

 

 

Define: Extracellular matrix

ECM

 

 What are the functions of the ECM?

Definition

 

 

organized network of material produced and secreted by cells.

Functions of ECM:

-site for cell attachment

-physical support for cells

-substrate through which cells can move

-contain regulatory factors (signals)

-Seperate/define tissues

 

Term

 

 

 

Components of the ECM are produced and assembled into a network including.________,__________ and________.

Definition

i) Proteins and glycoproteins(collagen,fibronectin, laminin).

 

ii) Proteoglycans = proteins with long chains of polysaccharides. 

 

 

 

Term

True or False:

 

i) The ECM is a static environment.

 

 

ii) Cells bind to ECM and this influences cell survival and cellular activity.

 

iii) Cell-ECM interactions define tissue and the function of proteins within the membrane.

Definition

False.

 

i) False: The ECM is a dynamic environment.

 

ii) True

 

iii) False: Cell-ECM interactions define tissue and organ function.

Term

 

 

 

Describe the composition and function of a cellular membrane.

 

Definition

 

Composed of: cellulose, hemicellulose, pectinand proteins.

 

Fucntions: 

-Structural support to cell and organism as a whole.

-protect cell from mechanical damage and pathogens

-contains biochemical information for cell.

 

 

 

Term

 

 

 

In the mitochondria, which of the following components is powered by a protein gradient?

 

a) H+ channel

b) Electron Transport Chain

c) ATP synthase

d) Cytochrome C

Definition

 

 

c) ATP synthase

Term

 

 

Compare the Outer and Inner

Mitochondrial Membrane 

Definition

OMM                                            IMM                      -Contains many enzymes with   - high protein:lipidratio3:1

diverse metabolic functions     -forms double layered                                                     sheets (cristae)

 

ex/porins: -large channels      - rich in phospholipids

               -freely permeable      called cardiolipin

               when open                 (characteristic in 

        (ex/ATP)                          biological membranes).


 

Term

 

What is the function of the Cristae?

Definition

 

 

-increase membrane surface area

 

-contain machinery for aerobic respiratio and ATP formation.

Term

 

 

 

What compartments seperate the inner and outer mitochondrial space?

Definition

 

 

 

Aqeuous Compartments of the mitochondria

 

1) intermembrane space

2) matrix:

high [protein]- gel like consisitency 

mitochondrial ribosomes 

mitochondrial DNA (mtDNA)

-encodes polypeptides that integrated into the IMM, ribosomes and tRNA. 

Term

 

 

Why is the balance of ordered and disordered structure important to the function of biological membranes?

Definition

 

 

- ordered membrane structure tends to be more rigid

- disordered membrane structure tends to be more flexible

A balance between these allows:

- the membrane to provide mechanical support, and act as a barrier, while still being flexible

- dynamic interactions between components within the membrane

Term

 

 

 

How will the transition temperature of a membrane be affected if the amount of unsaturated lipids is increased?

Definition

 

Unsaturated lipids introduce more disorder. This means the membrane will have an increased tendency to be in a liquid crystal state. The transition temperature will be lower.

Term

 

 

What is meant by a membranes transition temperature?

Definition

 

 

The temperature above which a membrane will be in a liquid crystal state, and below which it will be in a crystalline gel state.

Term

 

 

 

5. (a) Briefly, describe the structure and function of the voltage-gated K+ channel.

 

 

Definition

The voltage gated K+ channel is made up of integral membrane proteins that forms an aqueous pore that spans the plasma membrane.

 

- The channel is selective, allowing only K+ ions to be diffused, 

K+ ions move rapidly through the channel, from inside the cell to outside, down their concentration gradient

- the channel is gated, and can be opened and closed by the position of an inactivation peptide in response to changes in voltage across the membrane

Term

 

5) (b) What would be different about this if the channel was ligand-gated?

Definition

 

 

 

the opening and closing of the channel – by the inactivation peptide – would occur in response to binding of a specific molecule (a ligand)

Term

 

 

 

 

Definition
Term

 

 

What is Oxidative Phosphorylation?

Definition

ATP synthesis n the mitochondria.

 

Step 1

 

 electron transport and proton pumping

    -generate electorchemical gradient.


Step 2

 

 Proton movement down electrochemical gradient powers ATP synthesis. 

Term

 

 

 

Describe what happens in the electron transport chain.

What drives this process?

Definition
Oxidative Phosphorylation:ATP Synthesis in Mitochondria 
Step 1:
  • high energy electrons pass from coenzymes (NADH and FADH2) in the matrix to electroncarriers in IMM
  •  Series of e- carriers (resiratory enzyme complexes I,II,III,IV) = ETC 
  • Energy transfer at each complex used to pump Hfrom matrix to intermembrane space.
  •  low energy e- is transferred to terminal e- acceptor (O2)--> H2O produced.
Term

 

 

 

Describe the Process by which ATP is produced by ATP synthase

Definition

 

Oxidative Phosphorylation: ATP Synthesis in Mitochondria

Step 2:

-Movement of H+ down the gradient (across IMM), through ATP synthase, fuels ATP syntheis. 

Term

 

 

 

True or False:

 

The generation of a proton gradient is an active process

Definition

 

 

 

True. Because it will require energy. 

Term

 

 

 

 

 

Apoptosis

Definition

 

 

 

 

A normal occurence in which a series of events lead to the death of a cell.

 

( Self destruction of a cell)

Term

 

 

 

Apoptosis is characterized by: 

 

Definition

 

-shrinkage of a cell

-blebbing of Plasma Membrane

-Fragmentation of DNA and nucleus

-Loss of attachment to other cells

-Engulfment by phagocytosis

 

 

Term

 

Apoptosis is characterized by all of the following except:

 

a) Fragmentation

b) Engulfment by phagocytosis

c) Portrusions in Plasma Membrane

d) Expansion of Cell

 

Definition

 

 

 

D) Expansion of a Cell

Term

 

 

 

Vesicular Transport is used in all of the following except:

a) Endocytosis

b)Excocytosis

c) Movement of Materials between cells

d) Movement of Materials between organelles

e) Transport of materials across a membrane

Definition

 

 

C) Movement of materials between cells

Term

 

 

 

How and for what reasons is Apoptosis initiated?

Definition

 

 

 

The Intrinsic Pathway of Apoptosis.

Intinsic stimuli initiate apoptosis. 

-Proapoptotic proteins stimulate mitochondria to leak proteins (ex/cytochrome C) 

- Release of apoptotic mitochondrial proteins commits the cell to apoptsis=destruction of cell

-

Term

 

 

 

What is Excocytosis?

Definition

 

 

 

ER-->Golgi-->Plasma membrane

 

a process by which the contents of a cell vacuole are released to the exterior through fusion of the vacuole membrane with the cell membrane

Term

 

 

 

 

What is Endocytosis?

Definition

 

 

 

PM--> organelle 

Term

 

 

 

 

What is the interior of the ER called?

Definition

 

 

 

Lumen

Term

 

 

 

 

 

Where does the glycosylation of proteins occur?

Definition

 

 

 

 

Rough ER

Term

 

 

 

What is the ER membrane continuous with?

Definition

 

 

 

The nucleus

Term

 

 

 

 

The function of the smooth ER includes:

 

Definition

 

-Production of Hormones

ex/ endocrine cells

 

- Detoxification

ex/Liver cells

 

- Sequestaration (storage of Ca+2)

(In a Muscle cell, Smooth ER = Sarcoplasmic Reticulum) 


Term

 

 

 

 

Definition
Term

 

 

 

 

1)Why is Protein Folding Critical?

2)Where does it occur?

Definition

 

 

1)critical for The Conformation of enzymes (lock and key hypothesis) and receptors (to signal selective transport)

 

2) Occurs in the Ribosome

Term

 

 

 

What are the functions of the rough ER?

Definition

 

 

 

 

  • Protein Synthesis, modification and transport
  • Synthesis of membrane phospholipids
  • glycosylation of proteins
  • Protein folding

 

 

Term

 

 

Where do ribosomes perform there fuction?

Definition

 

 

 

In the Cytoplasm of the Rough ER

 

Polypeptides are synthesised from mRNA

Term

 

 

 

True or False: Translation of Integral Membrane proteins begins on free ribosomes.

Definition

 

 

True: 

 

It will always begin on free ribosomes and end in the ER.

Term

 

 

 

 

What proteins complete there translation on free ribosomes?

Definition

 

 

 

Peripheral membrane proteins because they are targeted to the nucleus,mitochondria, peroxisomes and chloroplasts.

 

Term

 

 

Which of the following proteins are most likely processed in the ER?

 

a) Cytosilic hexokinase

b) Na+ /K+ ATPase

c) Succinyl Co-A Synthetase 

d)Fibronectin

e) Both C and D

f) Both B and D 

Definition

 

F) Both B and D.

 

 

Term

 

 

 

Proteins that are synthesized in the rough ER: 

Definition
  • Secretory Proteins
  • Integral Membrane Proteins
  • Soluble Proteins associated with the  inside the endomembrane (lumen)

ex/ Proteins that function in ER golgi, and lysosomes

Term
What drived the interaction between the signal sequence and the signal recognition particle (SRP)?
Definition

 

Amino acids (hydrophobic) in an aqueous environment. 

because the hydrophobic particles are attracted to one another (like-like) 

Term

 

 

During translation of a protein, a signal sequence emerges. What happens next to complete translation of the polypeptide?

Definition

Cotranslational protein import 

 

After translation of signal sequence


1.Signal Recognition Particle binds to signal sequence- translation stops.

2. SRP binds to the SRP receptor on ER membrane - translation complex is now at the ER

3. SRP is released; ribosome binds to translocon

 

4. polypeptide enters the ER, through the translocon, as translation is completed


Term

 

 

 

What are the 2 possible fates after synthesis and processing in the ER. 

Definition

 

 

 

 

1) It is retained in the ER (if that is where the protein functions)

 

2) ER-->Golgi for further modification and deliery to distal partsof the biosynthetic/secretory pathway. 

 

Term

 

 

 

Transport from ER to Golgi Complex

Definition

 

Exit Sites: 

- Membrane and ER umen bud off to form transport vessicles.

 

ER-Golgi Intermediate Compartment(ERGIC) 

-region between ER and Golgi

-Transport vessicles fuse to form larger vessicles+interconnected tubules= vesicular-tubular clusters (VTC's) 

 

Term

 

 

 

 

List Areas in sequence from which the proteins travel from ER to golgi

Definition





ER---->ERGIC--->cis-golgi network (CGN)---> cisternae ------>Trans-cisternae--->TransGolgi network (TGN)

--->Golgi

Term

 

 

 

 

What are vesicular-tubular (VTC's)? What do they eventually form? 

Definition

 

 

VTCs are fused, tubular structures

 

They form the cis-golgi network. 

 

Term

 

 

 

 

Modification of Proteins iGolgi occur in which structure(s)? 

a) Cis cisternae

b) Cis Golgi Network

c) Trans Cisternae

d) a,c,d.

 

Definition

 

 

a) Cis cisternae

Term

 

 

 

What are the functions of the vesicular transport protein coat?

 

 

Definition

 

 

-Help form a vessicle.

-Help Select Cargo (material inside/on the vessicle).

 

 

Term

 

 

 

 

What are the two types of vesicular protein coats? How do they differ in their function?

Definition

 

COP1 and COP2 move in different directions.

 

COP1= retrograde (reverse)

COP2= anterograde (forward)

 

COP2: ER to Golgi

 

COP 1: Golgi--> ER

Term

 

 

 

List and Describe the 4 basic steps of vesicular traffiking.

Definition

 

1) Movement of vesicle to the target compartment 

-uses cytoskeleton and motor proteins

2) Tethering vesicle target compartment

-uses RABs

3) Docking of the vessicles to target compartment 

-uses SNAREs

4) Fusion of vessicle and target membrane.


 

Term

 

 

 

 

Describe the structure of the lysosome. How does this relate to their function? 

Definition

 

 

 

Internal pH of 4.6 (acidic pH can harm/destroy other proteins )

Hydrolytic enzymes

-acid hydolases (only work in acidic environment)

-Lysomal membrane

-contains glycoslated proteins that form a protective lining next to the lumen. 

Term

 

Endocytosis is:

a) The transpot of materials from an orgaelle to the plasma membrane via vesicles

b) The internalization os materials 

c) The movemtn of materials between an organelle

d) The anterograde movement of COPII coated vessicles from the ER to Golgi

Definition

B)  The internalization os materials


A= Excocytosis

D= COP1and COP2

Term

 

Describe the difference between consitiutive and regualted excocytosis.

Definition

Constitutuive- happens all the time 

 

Regualted- ex/secretion of neurotransmitter,

secretion of insulin

Term

 

 

 

Why is it important for the vesicular membrane to be glycosylated? 

 

 

 

Definition

-Come from lysosome (lysosome comes from golgi) 

-protects it from acidic enymes

-When a vessicle comes off, it takes part of the golgi membrane (lysosme)

 

Term

 

 

 

 

Why is it important for lysosmes to have a low pH?

Definition

 

 

 

 

to digest, and breakdown other molecules.

only active in an acidic environment (hydrolytic) 
Term

 

 

 

Name 2 main functions of Lysosome.

Definition

 

1) Autophagy: organelle turnover. 

 

2) to breakdown molecules

Term

 

 

 

Define autophay and describe its process 

 

 

 

Definition

Destruciton of organelles and their replacement.

-fuses with ER-derived autophagic

 

vacuole--> autophagolysosome

 

-Conetents enzymatically digested--> residual body-->2 fates: 

i) released (excocytosis)

ii) retained-->lipofusin granules (storage spot)

too toxic to be released.


Term

 

 

 

Plant Vacuole

 

Definition

 

 

fluid filled, membrane bound organelle

Term

 

 

 

What is the tonoplast? Why is it important for the cell to function?

Definition

 

 

It is a vaculoar membrane

 

It contains active transport systems that generate a high [ion] concentration (which creates gradient for water to move in). (used in osmotic regulation)

 

Product of secretory pathway

 

Term

 

 

Why is the storage of toxic componds especially important for a plant cell.

Definition

 

 

-applies turgor pressure

-supports soft tissues

-stretches cell wall during growth. 

Term

 

 

The Function of the Cytoskeleton include:

a)Contractility and motility

b) Spatial Organization

c) Structural Support

d) Intracellular support

e) All of the Above

f) None of the above

Definition

 

 

e) All of the Above

Term

 

Which of the following proteins contained a signal sequence when it is being translated?

 

a) Lysomal hydrolase

b) Lysomal membrane protein

c) impossible to know

d) a and b

 

Definition

 

a and b

Term

 

Which components are most commonly associated with motor proteins?

a) actin microfilaments

b)intermediate microfilaments

c) microtubules

d) a + b

e) a +c

 

Definition

 

a+c

Term

 

 

Describe the difference between an axonemal and cytoplasmic microtubule.

Definition

 

Axonemal: Highly organized and stable-

-part of structure involved in cell movement.

 

Cytoplasmic: lossly organized,dynamic

-located in cytosol

Term

 

Why is polarity of MT's important?

Definition

 

 

direction of movement, 

 

-cell growth/shrinkage

Term

 

 

What happens at the microtuble growing centre? 

Definition

 

 

central site of assembly of Microtubules.

Term

 

In general, how is a microtubule situated within a cell?

 

Definition

 

 

minus end in center extends to plus end on the outside of cell

Term

 

MT's undergo rapid dynamic assembly and disassembly

Definition

 

Dynamic instability: in vivo leads to rapid turnover of MT's w/in a cell

 

Catastrophe: shrikage occuring rapidly at plus end.

Term

 

 

During vesicle trafficking, which of the following proteins functions closest to the fusion of the vesicle and target membranes? [1 mark]

A) Rabs

B) SNAREs

C) COPI

D) COPII

E) Myosin

Definition

 

 

B) SNAREs

Term

 

 

12. What is a lipofuscin granule? [1 mark]

A) a form of secretory granule

B) the product of lysosomal fusion with the plasma membrane

C) an autophagolysosome

D) a residual body (formed during autophagy) that is retained within a cell

E) a residual body that is secreted by a cell

Definition

 

D) a residual body (formed during autophagy) that is retained within a cell

Term

 

 

15. Compare and contrast the structures of microtubules and intermediate filaments.

Definition

- both are polymers of protein subunits

- both are non-branched, filamentous structures

- microtubules (MTs) are all made of (globular) tubulin αβ heterodimers; intermediate filaments (IFs) are made from a heterogeneous family of fibrous proteins

- MTs are polar; IFs are not

- IFs are very stable; MTs are dynamically unstable

- MTs have a larger diameter (25 nm) than IFs (10-12 nm)

- MTs support motor-based transport; IFs do not

Term

 

Describe the difference between the 2 classes of

Motor Associated Proteins (MAPs)

Definition

1) Non-motor: In cytosol, organized in microtubles

 

2) Motor: transports materials 

i) Kinesin

ii)Dynein 

-use ATP to generate force

 

 

Term

 

 

 

Toward which end of the microtuble is dyenin directed ?

Definition

 

 

Minus end directed, facing nucleus.

 

microtubule involed in movement

 

Axon walks toward the middle.

 

Term

 

A synaptic vesicle is being transported down an axon to a distant synapse. Which type of MAP is most likey powering this transport?

a) Dynenin

b) Tau neurons

c) Myosin via interaction with actin

d) Kinesin

Definition

 

 

d) Kinesin

Term

 

 

 

Are intermediate filaments polar? Explain.

Definition

 

 

monomers are aligned; IF dimers are polar with different N-and C- termini 


dimers associate anti-parellel; assembled filaments are not polar

Term

 

 

 

 

Which of following is the most stable cytoskeletal component?

a) microtubules

b) Intermediate Filaments

c) Microfilaments

Definition

 

b)  Intermediate Filaments

 

Term

 

 

 

 

What is the primary function of intermediate filaments.

Definition

 

 

provide structural support and mechanical strength. 

 

fiburous proteins contain centr alpha helical domain.

 

5 classes (I-V) 

-keratin:epithelial cells

-neurofilaments:neurons

-Lamins: nucleus of all cells.

 

Term

 

 

Definition
Term

 

Rank thefollowing cytoskeletal elements from largest to smallest: 

intermediate filaments, microtubules, microfilaments.

Definition

 

 

 

microtubules>intermediate filaments>microfilaments

Term

 

 

 

Name the individual molecules that make up microfilaments.

Definition

Polymer of protein actin(compact)

 

Polypeptide = 42Kda, binds to ATP

 

-Individual molecules: G-actin (globular)

Polymerized microfilament: F-actin 

Term

 

 

 

What are the primary functions of microfilaments?

Definition

 

 

-maintanence of cell shape 

-cell movement

-Cytokinesis

-Muscle contraction

Term

 

 

 

 

True or False:

 

During F-actin microfilament assembly, elongation occurs at both ends of the growing filament. 

Definition

 

True:

 

Elongation is fast, occurs at both ends. 

 

faster at + end

Term

 

What is F-actin? 

 

 

 

 

Definition

 

 

Monomers that are incorporated into the filament in same orientation

 

It is polar.

Term

 

 

 

Nuclear Lamina

Definition

 

  • Thin meshwork of filamentous proteins

-lamins (intermediate filaments) 

 

  • bound to inner surface of NE 
  • Provides structural support for NE 
  • attachment sites for chromatin  
Term

 

 

 

 

Nuclear Envelope

Definition

 

2 parallel phosolipid bilayers

  • outer membrane binds ribsomes and is continuous with the membrane of membrane of the rough ER
  • inner membrane 

-bears integral proteins, which connect the nuclear lamina

Term

 

 

 

Function of the Nuclear Envolope: 

Definition

-seperates nuclear content from cytoplasm 

-seperates trascrciption/translation

 

-Selective barrier

-allows limited movemtn of molecules between nucleus and cytoplasm.

 

-suppoted by nuclear lamina

Term

 

What is the difference between IFs, microtubules and F-actin? 

Definition

 

 

F-actin networks can be highly branched.

Term

 

 

Function of Nucleus:

Definition

 

 

  • Storage, replication and repair of gentic material
  • Expression of genetic material
  • Transcription of mRNA, tRNA and rRNA

        - splicing

  • ribosome biosynthesis
Term

 

 

Nucleus Structure:

Definition
  • Nucrlear Envelope

-nuclear membrane

-nuclear pores

-nuclear lamina

 

  • Nuclear Contents: chromatin, nucleoplasm, nuclear matrix, nucleolus. 
Term

 

 

 

Myosin is an F-actin associated Motor Protein

Definition

 

-large family of proteins, use ATP

-most move toward plus end of microfilament

-divided into 2 broad groups

 

1) conventional myosins:

-typeII 

-priamry motor for muscle contraction

 

2) unconventional myosins:

-type I, type III-XVIII

Term

 

Arp 2/3 complex

Definition

 

The cooridinated activity of actin-binding proteins control microfilaments forming lamellipodium to allow directed movement of cells.

Term

True or false

 

Microtubule and microfilament based motors are both involved in active transport

Definition

False

 

Microtubule and microfilament based motors are both involved in vesicular transport

Term

 

 

Nuclear Pores

Definition
  • gateways between cytoplasm and nucleoplasm
  • 3000-4000 pores/nucleus
  • inner and oiter membrane fuse--> pores 
  • Pores complain Nuclear Pore complex 
Term

 

 

 

Nuclear Pore Complex 

 

Definition

 

 

 

  • composed of nucleoporins
  • octagonal symmetry
  • fits into pore
  • projects into cytoplasm & nucleoplasm
  • Central channel lined with the filaments of NUPs
Term

 

 

Function of NPC

Definition
  • passive diffusion of molecules smaller than 50kDa or 9nm
  • Regulated movemtn of large molecules
  • regulated movement of protiens into the nucleus requires a 

nuclear localization signal

 

 

NLS= short stretch of positively charged amino acids within the proteins. 

Term

 

Cellular function is acutely dependent upon nuclear import and export 

 

- nucleocytoplasmic traffiking 

  • Nucleotides 
  • Structural - lamins & nuclear matrix proteins
  • DNA: packaging proteins
  • Proteins for RNA processing and export
  • Proteins for ribosome synthesis and export. 
Definition
Term

 

 

 

Function of the Nucleolus

Definition

 

  • Ribosome biogeneis

-rRNA synthesis

-rRNA processing

-assembly of subunits

-40s and 60s subunits are exported to cytoplasm

 

  • tRNA synthesis
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