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Intro
ex3 - biology
51
Medical
Professional
09/23/2011

Additional Medical Flashcards

 


 

Cards

Term

main properties of?

 

MTs

Actin

IFs

Definition

organelle location and division

locomotion, cytokinesis, exo/endocytosis

strength

Term
what is stathmin?
Definition
a monomer seq. unit.  it binds free tublin therefore taking it out of the reservoir of tublin to grow an MT
Term
what can break an MT in the middle?  how does it do it?  why does it do it?
Definition
katanin - it has the ability to hydrolyze ATP.  it can increase the rate of MT synthesis by leaving short ends of previous MTs that are starting points for new MTs, or it can start to disessemble them because the cell needs to cut back on its framework.
Term
difference btwn taxol and colchicine?
Definition
taxol stabilized MTs by binding to monomers that have aggregated.  colchecine seq. monomers allowing for disassembly
Term
what is the contractile ring that separates cells in division composed of?
Definition

actin fibers

 

Term
what protein are actin filaments anchored by that assist in fxns like sweeping and and motility?
Definition
formin.  ARP proteins also serve thing function as they are acitn originating pts
Term
what are tropomyosin and cofilin?  what's their difference?
Definition
they are side binding proteins.  tropo stabilizes, cofilin destabilizes.
Term
what is the formation of actin?
Definition
its "protofilaments" take on a helical formation 
Term
difference between thymosin and profilin.
Definition

thymosin sequesters free monomers therefore stabilizing the growth of actin.  

 

profilin has the opposite effect bc it aids in the addition of free ATP bound monomers

Term
what connects lateral sides of cells in reference to the intracellular matrices?
Definition
adherent junctions and focal adhesions
Term
what can be added to the plus end of an actin filament to stabilize it?
Definition
a CapZ capping protein known as Gelsolin.  Gelsolin is, however, a member of a larger severing family of proteins.  It would require a substantial amount of cytosolic Ca2+ in order to perform its severing fxns
Term
actin and intracellular meshwork
Definition

on the interior side of the PM, there are adherent junctions and focal adhesions which serve as connection sites for actin internally, but are adhesion site for cell to cell contact on the exterior

 

cadherins will be connected to these proteins extracellularly and span a protential space until they connect with a neighboring cells.  The intracellular tail of the proteins is connected to actin, and is therefore, significanly anchored

Term
what commonly transports neurotransmitter containing vesicles?
Definition
kinesin motor proteins
Term
where do IFs anchor
Definition

at desmosomes (cell to cell) and hemidesmosomes (cell to matrix).  the filaments at alpha helical.  they arrange in tetrametic subunits where two alphahelical stands are lined up, but they are anti parallel to two other monomeric stands with their amino groups facing the other's COOH groups

 

therefore, lack polarity, can have no motor proteins 

Term
transmembrane adhesion molecules for IFs
Definition

in epithelial cells, they are usually connected to desmosomes through desmolein and desmocollin via kertin fibers

 

the fibers connected at basil lamina are connected through integrin AB and plectin at hemidesmosomes

Term
what can deficiencies in plectin cause?
Definition
skin blistering, DMD, and neurodegeneration
Term
myosin I
Definition

present in all cells, has single head and tail.

 

the tail may bind a vesicle, the PM, or an organelle

Term
Myosin II
Definition

conventional myosin, found in muscle cells, is a dimer with two heads

 

each head will attach to different F-actin molecules (at amino head) and the two tails will attache to the two tails of another myosin 2 dimer (at COOH head)

 

makes contractile activity possible and cytokinesis

Term
Myosin V
Definition

unconventional

 

double heads bind to actin while the globular tails can bind to a Rab protein on a vesicle.  works in vesicle transport and can move in both directions

 

moves melanosomes

Term
what does kinesin and dynein position
Definition
kinesin positions the ER while dynein positions the golgi
Term
some jobs of the ECM
Definition
provide structural support, seq growth factors, serve as pathways for migration, shape, embryonic development
Term
what is 25% of all protein mass composed of?
Definition
connective tissue
Term
how are collagen fibrils strengthened?
Definition
covalent cross linkage of lysine residues (highly cross-linked in the achilles tendon).  the precursors have propeptides on their ends so that they cannot form INTRAcellular collagen fibers
Term
types of collagen
Definition
sheet-forming collagen, anchoring,  fibrillar (rope-like)
Term

what is the malfxn in osteogensis imperfecta?

 

ehlers-danlos syndrome?

Definition

weak bones due to a collagen type one mutations

 

collagen type two mutations causing chondrodyplasias (abnormal cartilege)

Term
how are fibrils organized?
Definition

by cells with regulate their deposition over the plasma membrane sometimes done so by secretions that mediate their interactions with each other.

 

skin fibrils are women into a wickwork patter, tendon are organized in parallel bundles, bone and cornea are arranged in an orderly ply-wood style configuration

Term
what cells can synthesize elastins?
Definition
embryonic and jivenile fibroblasts.  this is why cells and tissues become less elastic with age (ie. skin)
Term
components of elastin
Definition

it is a very hydrophobic and is rich in proline and glycine, however, unlike collagen, cannot be glycosylated or hydroxylate lysines.

 

comes in alternating segments of (1) lysine and alanine a helicial segments and (2) hydrophobic segments

 

tropoelastin, the elastin precursor, is soluble

Term
assembly outside the cell of elastin?
Definition

the lysines get widely crosslinked once the elastin precursor has been transported outside the PM.  the elastin network then gets covered by MAGPs (microfibril-associated glyxoproteins; such as fibrillin-1 and -2)

 

deficiencies in formation of fibrillin-1 can lead to marfan's syndrom (lanky with spidery fingers and narrow aorta)

Term
what to proteogylcans link to?
Definition

polysaccharide chains called glycosaminoglycans (GAGs).  this produces very hydrated "ground substances" which embed in collagen and elastin (space is created this way and prevents too tight of packing; also, molecules are able to pass through the ECM with this space created)

 

these proteins are sythne. by RER and GAGs are assembled on them inside the golgi

Term
more on GAGs
Definition

very hydrophilic, negatively charged by carbonyl and sulfate, therefore will attract Na+ which will draw water out extracellularly and take on a very extended conformation

 

types include:

hyaluronan

chondroitin/dermatan sulfate

heparin

keratan

 

Term
proteogylcan of major importance in cartilege?
Definition
aggregan; consists of 100 confroitin sulfate chains and about 30 keratan sulfare chains linked to a serine rich core
Term
decorin?
Definition
single chained proteoglycan secreted by fibroblasts and it decorates surface of collagen fibrils
Term
mast cells and proteoglycans?
Definition
mast cells package seglycin into secretory granules
Term
the proteoglycan syndecan
Definition

a transmembrane protein which has extracellular GAGs connected to chondroitin sulfate and haparin sulfate, while its intracellular doman is attached to the actin cytoskeleton.

 

this positioning allows it to act as a receptor for matrix proteins

 

they modulate integrin fxn at focal adhesions in fibroblasts and can bind fibroblast growth factors and present them to FGF receptor proteins on the PM of the same cell

Term
the perlecan proteoglycan
Definition
a heparin sulfate linked proteoglycan which plays a role in the basal lamina of the kidney glomerulus and permits filtration of molecules passing into the urine
Term
hyaluronan
Definition

simplest and largest of GAGs with 25,000 repeating dissharide units.  it is abundant in early embryos as it plays the role of a space filler during development (almost the size space of an organelle)

 

also big enough to create a cell free space which allows for the important migration of cells forming the heart and cornea during development

 

can allow passage of Wharton Jelly

Term
purpose of adhesive glycoproteins
Definition
help "glue" the ECM to cell.  they do so with multiple binding site specific or many components of the ECM
Term
the fibronectin gylco-adhesion-protein
Definition

has two subunits bound by sulfide bonds.  the two subunits have sollagen bind, cell bind, heparin binding domains.  each domain has "modules" too.  The main ones in fibronectin binds to integrin.  basically it can just glue everything together

 

Term
fibronectin fibrils
Definition

these are found on the interior of the cell and are attached to actin.  actin helps influence fibronectin orientation and can pull on the fibronectin until they begin to display a cryptic domain allowing them to bind to each other (sometimes disabled in cancer cells allowing them to break apart from each other and metastasis).

 

this fibronectin/fibril relationship can be inhibited by uteroglobulin in the kidney

Term
laminin
Definition

a large protein that can self-assemble in vast 2D networks.  very important component of basal lamina.  the laminin can bind to perlecan type IV collagen, and nidogen and holds all the components of the basal lamina together making a nice sheet.

 

it is also capable of signaling down an integrin to stimulate things such as cell proliferation.

Term
ECM adaptability?
Definition

the ECM has to be able to turnover and deconstruct in response to events such as the need for cell migration, infection, injury, tissue remodeling.

 

this is done by extracellular proteases.  in normal tissues, this happens slow and naturally, and continuously

 

there are two classes of these protease, metalloproteases (MMPs) and serine proteases (some members are chymotrypsin, tyrpsi, elastase).

 

most components mentioned are degraded extracellularly, but proteoglycans and hyalauronans under endocytosed and brought to lysosomes for degradation

Term
basal lamina following cell degeneration?
Definition
the exterior framework of the basal lamina can be retained even as the cells has been destroyed.  This can be a placeholder for a future cell of the same type to form at.  a nerve cell wont be able to regenerate, but the synaptic path that previously existed will be reconstructed
Term

The action of proteases is restricted by protease inhibitors:


Definition
1)tissue inhibitors of metalloproteases (TIMPs)
2)serine protease inhibitors (serpins
Term
tissues can begin to from floating single cells thanks to organization performed by the ECM
Definition

integrin can stimulate the ECM of other cells it comes in contact with and can propogate orginization with any cells in the vacinity if its environment demands it to do so.

 

this is also beneficial to the cells that were floating around because many need to be attached to survive (known as anchorage dependence).  binding causes vital signal transduction

 

fibronectin as well as integrin are very important in this process

Term
motility and the ECM
Definition

cells may need to perform locomotion in order to find other cells in which to associate their ECM with.  Actin will play the major role in this, as per usual, but proteins like fibronectin can also help.

 

they help by forming adhesions as it moves to find a cell to associate with

Term

Basal lamina is synthesized by :


help it to determine:


Definition

the cells that rest on it


cell polarity,

influence cell metabolism,

organize the proteins in adjacent plasma membrane,

promote cell survival,

proliferation,

differentiation,

serve as specific highways for cell migration. 


mature basil lamina contain type IV collagen

Term
ATM gene, presentation, purpose
Definition
spidery red veins, sensed DNA action codes for it and it activates p53 
Term
p53 action
Definition
p53 is a tumor supressor gene that is activated by ATM and when it is prosphorylated it activated the transcription of p21, which then in turn arrests the cell cycle
Term

what does ___  do?

 

MYC

 

HER2/neu

 

BCL2

Definition

it is a transcription regulator

 

activates EGFR

 

anti-apototic gene

Term
describe RB1's activity
Definition
It is usually usually bound to E2F.  which it is phosphorylated, it is inactivated and releases permitting passage through the cell division cycle.  This is fine when it gets controlled natural signals, but mutations will cause it to be inactive most of the time and, thus, no longer controlling cell division
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