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Intro Cell Biology Test #1
Flashcards for information on the first test in Wilhite's Intro Cell Biology class.
36
Biology
Not Applicable
09/09/2007

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Term
Emergent properties
Definition
Novel properties emerge that are not present at the level just below.

ex #1: If a serious head injury disrupts the intricate architecture of a human brain, the mind may cease to function properly even though all of the brain parts are still present. Our thoughts and memories are emergent properties of a complex network of nerve cells.

ex #2: At an even higher level of biological organization—at the ecosystem level—the recycling of nutrients such as carbon depends on a network of diverse organisms interacting with each other and with the soil and air.
Term
How does evolution explain the diversity we see in living organisms?
Definition
Descent with modification. Diversity in the modifications that evolved as species branched from their common ancestors. Successive generations change slightly to better fit their environment. They diverge into separate groups according to diet, habitat, etc until they are new species.

ex: Finches
Term
How does evolution explain the unity that we find in living organisms?
Definition
Unity in the kinship among species that descended from common ancestors. Though they have modified so much that they are very diverse, they still have things in common.

Ex #1: Humans, whales, bats all have the same forelimb bones.

Ex #2: DNA
Term
Biological heirarchy
Definition
Atom
Molecule
Organelle
Cell
Tissue
Organ
Organism
Population
Community
Biosphere
Term
Domain Bacteria
Definition
Prokaryotes
Term
Domain Archaebacteria
Definition
Prokaryotes

Molecular evidence that archaea are at least as closely related to eukaryotic organisms as they are to bacteria.
Term
Domain Eukarya
Definition
Eukaryotes
Term
Classification scheme for naming organisms (genus, domain, family, etc)
Definition
Domain
Kingdom
Phylum
Class
Order
Family
Genus
Species
Term
Trace elements
Definition
Elements that are required in only minute quantities for life.

Ex: Iron, iodine
Term
Ionic bonding
Definition
Two atoms are so unequal in their attraction for valence electrons that the more electronegative atom strips an electron completely away from its partner.

Ex: A sodium atom has a total of 11 electrons, with its single valence electron in the third electron shell. A chlorine atom has a total of 17 electrons, with 7 electrons in its valence shell. When these two atoms meet, the lone valence electron of sodium is transferred to the chlorine atom, and both atoms end up with their valence shells complete. (Because sodium no longer has an electron in the third shell, the second shell is now the valence shell.)
Term
Covalent bonding
Definition
The sharing of a pair of valence electrons by two atoms.

Ex: When the two hydrogen atoms come close enough for their 1s orbitals to overlap, they share their electrons. Each hydrogen atom now has 2 electrons associated with it in what amounts to a completed valence shell
Term
Hydrogen bonding
Definition
Forms when a hydrogen atom covalently bonded to one electronegative atom is also attracted to another electronegative atom.

Ex: The partial positive charge of a water molecule is attracted to the partial negative charge of other water molecules.
Term
van der Waals interaction
Definition
Weak and occur only when atoms and molecules are very close together. Attraction between atoms. Interactions between electron clouds.
Term
Hydrophobic interactions
Definition
Water attracted to polar and charged molecules. Non-charged molecules are repelled by water, so they prefer contact with each other over water.
Term
Strength order or the various (covalent, ionic, etc) bonds in the cell
Definition
Covalent (considerably stronger)
Ionic
Hydrogen
(Hydrophobic)
van der Waals
Term
Some characteristics of carbon
Definition
Bond with other carbons
Can form ring structures
Can rotate as a single bond (double can't)
Term
The four emergent properties of water
Definition
COHESION Surface tension. The hydrogen bonds hold the substance together. Cohesion due to hydrogen bonding contributes to the transport of water and dissolved nutrients against gravity in plants. MODERATION of TEMPERATURE Water moderates air temperature by absorbing heat from air that is warmer and releasing the stored heat to air that is cooler. Water is effective as a heat bank because it can absorb or release a relatively large amount of heat with only a slight change in its own temperature. LESS DENSE AS A SOLID If ice sank, then eventually all ponds, lakes, and even oceans would freeze solid, making life as we know it impossible on Earth. During summer, only the upper few inches of the ocean would thaw. Instead, when a deep body of water cools, the floating ice insulates the liquid water below, preventing it from freezing and allowing life to exist under the frozen surface. POLAR SOLVENT Polar and charged substances dissolve in water.
Term
What is a solution?
Definition
A completely homogeneous mixture of two or more substances.
Term
What is a solvent?
Definition
The dissolving agent of a solution

Ex: Water when you mix water and sugar
Term
What is a solute?
Definition
The substance that is dissolved in a solution

Ex: Sugar when you mix water and sugar
Term
What is an acid?
Definition
A substance that increases the hydrogen ion concentration of a solution.

Ex: When hydrochloric acid (HCl) is added to water, hydrogen ions dissociate from chloride ions. This results in the solution having more H+ than OH-.
Term
What is a base?
Definition
A substance that reduces the hydrogen ion concentration of a solution. Some bases reduce the H+ concentration directly by accepting hydrogen ions. Other bases reduce the H+ concentration indirectly by dissociating to form hydroxide ions, which then combine with hydrogen ions in the solution to form water.
Term
On the pH scale, is 2 an acid or a base? Is 13 an acid or a base? 7?
Definition
2 is an acid.
13 is a base.
7 is neutral
Term
What is a buffer?
Definition
Substances that minimize changes in the concentrations of H+ and OH− in a solution. A buffer works by accepting hydrogen ions from the solution when they are in excess and donating hydrogen ions to the solution when they have been depleted. Most buffer solutions contain a weak acid and its corresponding base, which combine reversibly with hydrogen ions.
Term
What do proteins do?
Definition
Nearly every job. Structural support (internal skeleton in cells). Protection. Catalysis (speeding up chemical rxns (enzymes)). Transport (getting things actoss the cell membrance, around the cell, etc). Regulation (balance in cell, genes on or off). Movement (of cells, organisms). Communication.
Term
What do polysaccharides do?
Definition
Some are involved in structure. Energy storage. Communication. Starch - plant polysaccharide. Glycogen - animal Cellulose - formed when chained (plant cell wall) Chitin - fungi version of cellulose
Term
What do nucleic acids do?
Definition
Information storage. DNA. RNA. Made of monomers. Sugar with 5 carbons (pentose sugar), nitrogenous base, and phosphate group.
Term
What are lipids?
Definition
Lipids are the one class of large biological molecules that does not consist of polymers. Grouped together because they share one important trait: They have little or no affinity for water.
Term
What are nucleic acids made of?
Definition
Monomer is the nucleotide which is composed of a pentose sugar, phosphate group, and nitrogenous base. Many of these together create the polymer, polynucleotide. [image]
Term
What is a protein made of?
Definition
They are all polymers constructed from the same set of 20 amino acids. Polymers of amino acids are called polypeptides. A protein consists of one or more polypeptides folded and coiled into specific conformations. Amino acid: [image]
Term
What is the primary structure of a protein?
Definition
A polypeptide.
Term
What is the secondary structure of a protein?
Definition
Beta pleated sheet
Alpha helix
Term
What is the tertiary structure of a protein?
Definition
Further folds in on itself. This is where a protein becomes functional. Interactions between R groups cause it.
Term
What is the quaternary structure of a protein?
Definition
Multiple polypeptides come together.
Term
What is the name of the proteins that help other proteins fold into the right shape?
Definition
Chaperone proteins.
Term
What are polysaccharides made of?
Definition
They are macromolecules, polymers with a few hundred to a few thousand monosaccharides joined by glycosidic linkages.
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