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Honors Biology Midterm Study
To help me and anyone else study for honor's biology.
136
Biology
9th Grade
01/23/2010

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Term
What are the five steps of the scientific method?
Definition

  1. Make an observation.
  2. Ask a question/State a problem.
  3. Form a hypothesis.
  4. Test your hypothesis.
  5. Draw a conclusion.

Term
What is scientific theory?
Definition
A hypothesis that has been tested for its predictive power many times and has not yet been found incorrect.
Term
All matter is composed of:
Definition
atoms.
Term

What are the three parts of an atom?

Definition

  1. Protons: + charge.
  2. Electrons: -- charge.
  3. Neutrons: 0 charge.

Term
Where are the three parts of an atom found?
Definition

  1. Protons: the nucleus.
  2. Electrons: the electron cloud- rotating around the nucleus.
  3. Neutrons: the nucleus.

Term
What does an element's atomic number determine?
Definition
The number of protons an element has.
Term
How do you find atomic mass?
Definition

Add the number of protons and neutrons together.

It is also located on the periodic table, directly below the element's symbol.

Term
What are isotopes?
Definition
Atoms of the same element with different numbers of neutrons.
Term
What type of isotopes spontaneously decay into elements of lower atomic number?
Definition
Radioactive isotopes.
Term
What are ions?
Definition
Atoms that have gained a charge by losing or gaining electrons.
Term
What is the difference between cations and anions?
Definition

Cations have positive charge.

Anions have negative charge.

Term
How are electrons distributed in energy levels?
Definition
The maximum capacity for the first ring is 2. Up to 8 in other levels.
Term
What are valence electrons?
Definition
Electrons in the outermost ring of an atom. They determine the element's properties and are important in bonding.
Term
What is a molecule?
Definition
A group of atoms linked by chemical bonds.
Term
What is the difference between ionic and covalent bonds?
Definition
In an ionic bond, atoms transfer electrons. In a covalent bond, atoms share electrons.
Term
Which type of bond is stronger, ionic or covalent?
Definition
Ionic.
Term
When do chemical reactions occur?
Definition
During the formation or destruction of atomic bonds.
Term
In a chemical reaction, the ________ result in the _________.
Definition
reactants; products.
Term
What three factors affect the rate of chemical reactions?
Definition

  1. Temperature.
  2. Concentration of reactants/products.
  3. Catalysts (presence of enzymes).

Term
A water molecule has oppositely charged ends. This makes it_______.
Definition
polar
Term
The oxygen end of a water molecule is slightly_________.
Definition
negative
Term
The hydrogen end of a water molecule is slightly___________.
Definition
positive
Term
What type of bond to water molecules form?
Definition
Hydrogen bond.
Term
What are the eight properties of water?
Definition

  1. Cohesion
  2. Adhesion
  3. Capillarity
  4. High specific heat
  5. High heat of vaporization
  6. Solid is less dense than liquid
  7. Universal solvent
  8. Transparency

Term
What three things do living things use water as?
Definition
A coolant, a transport medium, and a habitat.
Term
Describe water cohesion.
Definition
Water molecules are attracted to one another because of their oppositely charged ends.
Term
What does cohesion create on the surface of water?
Definition
Surface tension, a measure of the force necessary to stretch or break the surface of a liquid.
Term
Describe water adhesion.
Definition
Water molecules are attracted to other substances with which it can form hydrogen bonds.
Term
Describe capillarity.
Definition
Due to a combination of adhesion and cohesion, water is pulled up little tubes, such as the ones that bring water to treetops.
Term
What is specific heat?
Definition

The amount of heat that must be absorbed or released to change the temperature of 1 gram of a substance 1o C.

Term
What does it mean to say that water has a high specific heat?
Definition
Large amounts of energy are needed to break its hydrogen bonds and raise its temperature, but the energy is released again when the water is cooled.
Term
Describe evaporative cooling.
Definition
A large amount of energy is required to change 1g of water into a gas, breaking hydrogen bonds.
Term
Why is water called the "universal" solvent?
Definition
Water is a highly effective solvent because of its ability to form hydrogen bonds. Water clings to polar molecules causing them to be soluble in water, but repels non-polar molecules.
Term
What does hydrophobic mean?
Definition
Repelled by water.
Term
What does hydrophilic mean?
Definition
Attracted by water.
Term
Why is it important that water is transparent?
Definition
It allows light to pass through, which lets underwater plants grow. Basically, it provides a better habitat.
Term
Why is it important that ice is less dense than water?
Definition
Oceans and lakes don't freeze solid because the frozen ice floats on the top, insulating the water underneath and allowing organisms to survive all year long.
Term
What does pH stand for?
Definition
Parts hydrogen.
Term
On the pH scale, (0-14), a substance below seven is_________ and substance above seven is _________.
Definition
Acidic, basic.
Term
Acids have many ____ ions and bases have many ____ ions.
Definition
H+; OH-
Term
What happens when bases dissolve in water?
Definition
They disassociate to increase the concentration of H+.
Term
What role do buffers play?
Definition
They combine with H+ ions, thus decreasing H+ concentration. They therefore act as protection against extreme pH levels by donating or removing H+ as necessary.
Term
What are macromolecules?
Definition
The molecules that make up living cells, and the cells of living things.
Term
What are the four types of macromolecules?
Definition

  1. Carbohydrates
  2. Lipids
  3. Proteins
  4. Nucleic acids

Term
What six elements are found in macromolecules?
Definition

Carbon

Hydrogen

Oxygen

Nitrogen

Phosphorous

Sulfur 

Term
What does 'organic' mean?
Definition
"Containing carbon."
Term
Why is carbon found in all living things?
Definition
It is a versatile atom; it has four valence electrons, and a variety of bonding patterns. It easily forms isomers. 
Term
What are isomers?
Definition
Molecules with the same chemical formula but different structure.
Term
What are functional groups and what do they do?
Definition
Atoms or clusters of atoms that are covalently bonded to a carbon backbone. They give organic compounds their different properties.
Term
What are polymers and how are they formed?
Definition

 

 Groups of monomers linked together through dehydration synthesis to form a single unit of a macromolecule.  

 

 

 

Term
How are polymers separated?
Definition
Hydrolysis.
Term
What is the byproduct of dehydration synthesis?
Definition
Water.
Term
What is a characteristic of lipids?
Definition
They tend to be insoluble in water.
Term
What are the four major types of lipids?
Definition

  1. Fats
  2. Phospholipids
  3. Steroids
  4. Waxes

Term
What is the only type of lipid with no fatty acids?
Definition
Steroids.
Term
What do all fatty acids have at one end?
Definition
A carboxyl group.
Term
All fatty acids are built on what?
Definition
A carbon backbone.
Term
What does it mean when a fatty acid is saturated?
Definition

 Every C atom is bonded to at least two H atoms, maximum number of H. 


Term
Give an example of a saturated fatty acid.
Definition
Butter, lard, peanut butter.
Term
What does it mean when a fatty acid is unsaturated?
Definition

There is at least one bond between successive C atoms.

Liquid at room temperature.

Term
Give an example of an unsaturated fatty acid.
Definition
Oils: vegetable, olive.
Term
What does it mean if a fatty acid is polyunsaturated?
Definition
There is more than one bond between successive C atoms.
Term
Animal fats are mostly ________, while plant fats are mostly _________.
Definition
saturated; unsaturated.
Term
Describe the structure of a fat molecule.
Definition

 Fatty acid(s) attached to glycerol, triglycerides are most common (3 fatty acids). 


Term
What are the three functions of fats?
Definition

 

  1. Insulation
  2. Long term energy storage (vs. carbs)
  3. Protection

 

Term
What are phospholipids?
Definition
The main components of biological membranes, e.g. cell membranes.
Term
Describe the structure of a phospholipid molecule.
Definition
A polar hydrophilic head (phosphorous group) with two non-polar hydrophobic tails (fatty acids, glycerol backbone.)
Term
Describe the backbone of a steroid molecule.
Definition
Four fused together C rings; very rigid.
Term
What is cholesterol?
Definition
The most common steroid in animals.
Term
What are some substances cholesterol forms?
Definition

  1. Hormones, such as estrogen, testosterone, and adrenaline, which regulate bodily functions.
  2. Vitamins, such as D.

 

Term
Describe the structure of a wax molecule.
Definition
Long chain of fatty acids linked to a long chain of alcohols or C rings.
Term
What are some characteristics of waxes?
Definition
Firm consistency, repels water.
Term
Why are waxes important?
Definition
They repel water.
Term
Where are waxes used in nature?
Definition
Beeswax, bird feathers, coats of water mammals, leaves, and fruits.
Term
What elements are in carbohydrates?
Definition
Carbon, hydrogen, and oxygen, in about a 1:2:1 ratio.
Term
What are the three classes of carbohydrates?
Definition
Monosaccharides, disaccharides, and polysaccharides.
Term
What are monosaccharides?
Definition

The simplest of carbohydrates.

Monomers.

Term
Describe the structure of a monosaccharide.
Definition
Ring structure, with 5- or 6-carbon backbone.
Term
Give five examples of monosaccharides.
Definition

  1. Fructose
  2. Glucose
  3. Galactose
  4. Ribose
  5. Deoxyribose

Term
What are disaccharides?
Definition
Two monosaccharides joined by a covalent bond.
Term
Give three examples of disaccharides.
Definition

  1. Sucrose
  2. Maltose
  3. Lactose

Term
What are polysaccharides?
Definition
More than two monosaccharides joined by covalent bonds.
Term
Give four examples of polysaccharides.
Definition

  1. Starch
  2. Glycogen
  3. Cellulose
  4. Chitin

Term
What are the elements in proteins?
Definition

Carbon

Hydrogen

Oxygen

Nitrogen

Sulfur

Term
What is the monomer of a protein?
Definition
Amino acids.
Term
Describe the structure of an amino acid.
Definition
Has an amino group, a carboxyl group, an H atom and an R group all bonded to a central C atom.
Term
How many types of amino acids are there?
Definition
Twenty, all grouped into 5 classes based on their R groups.
Term
Describe protein synthesis.
Definition

 Dehydration synthesis links the amino group of one amino acid with carboxyl group of the next, forming a peptide bond. 

Term
Describe the structure of a protein polymer.
Definition
One or more long chains of amino acids linked by peptide bonds.
Term
What are the two classes of protein polymers?
Definition
Dipeptides and polypeptides.
Term
What is the sequence of elements in any polypeptide's backbone?
Definition
N-C-C-N-C-C-N-C-C-N
Term
What are the four classes of proteins?
Definition
Primary, secondary, tertiary, quartemary.
Term
Describe the primary structure of a protein. 
Definition
Linear sequence of amino acids, linked together by peptide bonds; unique for each protein.
Term
What are the two types of secondary structures formed by hydrogen bonding?
Definition
The alpha helix (coils) and the beta-pleated sheet (fold-backs.)
Term
Describe a tertiary structure.
Definition
Spider and worm silk.
Term
Describe a tertiary structure.
Definition
Final folded shape of 3d protein based on bonding of R groups.
Term
Give an example of a tertiary structure.
Definition
Enzymes.
Term
What is a quartemary structure?
Definition
Two or more polypeptide chains associated to form a functional protein.
Term
What is the process of changing a protein's shape called?
Definition
Denaturalization.
Term
What affect does denaturalization have?
Definition
Usually renders proteins biologically inactive.
Term
Name and give examples of the three ways proteins can be denatured.
Definition

  1. Changing pH (adding lemon juice to fish)
  2. Changing temperature (cooking eggs)
  3. Changing ionic concentration (salt pickling to cure food)

Term
What are the elements in nucleotides?
Definition

Carbon

Hydrogen

Oxygen

Nitrogen

Phosphorous

Term
Describe the structure of a nucleotide.
Definition
Has a five-carbon sugar, (ribose or deoxyribose), a phosphate group, and a nitrogen-containing base.
Term
What types of nucleotides do not form nucleic acids?
Definition
ATP, NAD+, NADP+, and FAD.
Term
What types of nucleotides do form nucleic acids?
Definition
Deoxyribonucleic acid and ribonucleic acid.
Term
What is the main job of DNA?
Definition
To encode genetic information used to assemble proteins.
Term
What is the main job of RNA?
Definition
To read the information in DNA and direct protein synthesis.
Term
Describe the structure of DNA.
Definition
Double-helix with anti-parallel strands of a deoxyribose sugar-phosphate backbone.
Term
What are the four bases and which bonds with which?
Definition

Adenine, Guanine, Thymine, Cytosine.

A-T, G-C

Term
Which bases are purines and which are pyrimidines? 
Definition
A and G are purines. C, U and T are pyrimidines. Purines bind with pyrimidines.
Term
What is uracil?
Definition
Used instead of thymine in RNA strands.
Term
What did Chargraff's work show?
Definition
The base pairings A/T, G/C.
Term
How did Rosaline Franklin examine DNA and what did she conclude?
Definition
She used x-ray crystallography and concluded that DNA was some sort of helix.
Term
What did the Watson-Crick model look like?
Definition

 A double helix with two nucleic strands running in opposite directions held together bonds between bases, A/T and C/G.

Term
What is the difference between RNA and DNA?
Definition
RNA is a single strand, contains ribose instead of deoxyribose, and uracil instead of thymine.
Term
How many types of RNA are key players in protein synthesis?
Definition
Three.
Term
Why are enzymes catalysts?
Definition
They speed up reactions without being altered and lower the energy of activation. 
Term
What is an active site?
Definition
The place on an enzyme where the reaction occurs.
Term
What are the substrates?
Definition
The molecules that an enzyme changes during a chemical reaction.
Term
Describe the basic process of an enzyme.
Definition

  1. Substrate binds to enzyme's active site, creating enzyme-substrate complex.
  2. Chemical reaction takes place and changes substrate.
  3. Enzyme and substrate break apart.

Term
What are the specific features of enzymes?
Definition

1) Enzymes do not make anything happen that could not happen on its own. They just make it happen much faster.

2) Reactions do not alter or use up enzyme molecules.

3) The same enzyme usually works for both the forward and reverse 

reactions.

4) Each type of enzyme recognizes and binds to only certain substrates. 


Term
What is the difference between the lock-and-key model and the induced fit model?
Definition

Lock and key model: the enzyme's active site is perfectly shaped to fit the substrate.

Induced fit: the active site is changed to fit around the substrate after it has landed on the active site. 

Term
What is the difference between competitive and non-competitive inhibition?
Definition

Competitive inhibition is when the inhibitor lands on the active site, blocking the substrate.

Non-competitive inhibition is when the inhibitor lodges to a different part of the enzyme, permanently changing the shape of the active site and rendering it useless.

Term
What is allosteric activation?
Definition
An allosteric activator must bind to the allosteric binding site for a substrate to be able to bind with the enzyme.
Term
What is allosteric inhibition?
Definition
When an allosteric inhibitor binds with the allosteric binding site and substrates can no longer bind to the enzyme.
Term
Is allosteric inhibition/activation temporary or permanent?
Definition
Temporary.
Term
Describe feedback inhibition.
Definition
When enough of the final product of a series of enzyme reactions has been produced, one of the final product goes back to the original enzyme and binds with it, stopping production temporarily.
Term
What factors affect enzyme rates of reaction?
Definition

 

  1. Temperature
  2. pH level
  3. Concentration of substrate

 

Term
What is the affect of high enzyme concentration?
Definition
More enzymes = more active sites = higher rate of reaction.
Term
What is the affect of temperature on rate of reaction?
Definition

 

 Small increase in temperature increases molecular collisions and reaction rates, high temps disrupt bonds and destroy shape of active site 


 

Term
What is the affect of pH?
Definition
Every enzyme has a very narrow range of pH in which it works effectively; increasing/decreasing pH denatures protein and slows/stops reaction.
Term
Who invented the first microscope?
Definition
Zacharias Janssen
Term
Who wrote Micrographia and first called cells 'cells'?
Definition
Robert Hooke
Term
Who was the first person to observe single-celled organisms and accurately describe red blood cells?
Definition
Anton von Leeuwonhoek
Term
Who observed and named the nucleus in plant cells?
Definition
Robert Brown
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