| Term 
 
        | general MOA of natural compound as anticancer agents |  | Definition 
 
        | many of the naturally occurring anticancer compounds have antibiotic activity in addition to the anticancer activity 
 MAY INTERCALATE BETWEEN THE BASE PAIRS OF DNA
 strong non-covalent bones
 deforms and uncoils DNA
 prevents proper replication
 affects the action of many associated proteins
 
 MAY INHIBIT TOPOISOMERASE I OR II
 enzyme that is involved in cleavage of DNA during replication, but repairs cleavage after replication
 topoisomerases are enzymes that cause transient strand breakage during transcription
 
 MAY GENERATE CYTOTOXIC FREE RADICALS THAT BREAK DNA STRAND
 
 MAY TARGET TUBULIN AND MICROTUBULES (ANTIMIOTIC)
 |  | 
        |  | 
        
        | Term 
 
        | compounds that generate radicals |  | Definition 
 
        | antracyclines (streptomyces):  daunorubicin and doxorubicin 
 actomycins (streptomyces):  dactinomycin
 
 bleomycins (streptomyces verticullus): bleomycin sulfate
 
 these compound may generate radicals which can break DNA strands
 
 actinomycins are derived from streptomyces strain and have the ability to generate radicals due to a chromophore in their structure known as a quinoneimine
 
 reduction of this quinoneimine can lead to radical generation
 
 bleomycins chelate Fe++ and generate radicals
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | antracyclines 
 actinomycins
 
 they have a planar compound to their structure that allows DNA intercalation
 |  | 
        |  | 
        
        | Term 
 
        | bifunctional alkylating agents |  | Definition 
 
        | mitomycins:  mitomycin c 
 mitomycin C is bioactivated to a species that can serve as a bifunctional alkylating agent
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | taxanes (pacific yew):  paclitaxel (Taxol) 
 epothilones:  epothilone B
 
 the taxanes, and epothilones stabilize microtubulin
 
 as a result, they act as antimitotic agents
 |  | 
        |  | 
        
        | Term 
 
        | inhibition of tubulin polymerization |  | Definition 
 
        | vinca alkaloids:  vincristine and vinblastine 
 eribulin
 
 the vinca alkaloids bind to microtubules causing depolymerization
 
 eribulin inhibits microtubule dynamics in a novel mannar
 the compound binds to an unique site on tubulin resulting in suppression of microtubulin polymerization without effects on depolymerization
 also, it sequesters tubulin into non-functional aggregates
 by inhibiting miotic spindle formation, eribulin causes irreversible mitotic block, which ultimately leads to cell cycle arrest in the G2-M phase and apoptosis
 |  | 
        |  | 
        
        | Term 
 
        | topoisomerase II inhibitors |  | Definition 
 
        | anthracyclines (intercalators):  doxorubicin 
 epipodophyllotoxins (American Mandrake or Mayapple):  etoposide
 
 topoisomerases play a role in DNA replication and trascritpion
 
 the taxanes and epothilones inhibit topoisomerase II leading to double strand breaks
 |  | 
        |  | 
        
        | Term 
 
        | topoisomerase I inhibitors |  | Definition 
 | 
        |  | 
        
        | Term 
 
        | anticancer agents acting via radical species |  | Definition 
 
        | ANTRHACYCLINES: doxorubicin
 daunorubicin
 idarubicin
 epirubicin
 valrubicin
 
 ANTRACENEDIONES:
 mitoxanthrone
 
 ACTINOMYCINS:
 dactinomycin
 
 BLEOMYCINS:
 bleomycin sulfate
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | radical-chemical species capable of independent existence with one or more unpaired electrons 
 [image]
 
 radicals are independent chemical species that have one or more unpaired electrons
 
 the superoxide radical is generated by the 1 electron reduction of molecular oxygen
 
 superoxide dismutase can convert superoxide to O-2, which can form hydrogen peroxide in the presence of 2H+
 
 hydrogen peroxide can be broken to yield hydroxyl radicals
 
 also, hydrogen peroxide, in the presence of Fe++, can form hydroxyl radicals
 
 the enzyme catalase will break hydrogen peroxide down to water and oxygen
 
 although radicals are desirable to treat cancer cells (cleavage of DNA strands), they can be harmful to normal tissue
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 [image]
 
 ANTHRACYCLINES ARE GLYCOSIDES
 the non sugar is the AGLYCONE - anthracyclinone
 the SUGAR is L-daunosamine
 
 anthracyclines consits of a non-carbohydrate portion (aglycone) and a carbohydrate portion (L-daunosamine) connected via a glycosidic linkage
 
 the sugar is L- the substituent down at position C5
 
 the aglycone portion of the antracyclines is known as anthracyclinone
 
 QUINONE MOIETY:  highly oxidized state and is subject to reduction; compounds that contain quinones undergo one electron reductions to form radicals
 
 [image]
 
 doxorubicin differs from the other antracyclines in having a COCH2OH group instead of CH3 at position 9
 
 valrubicin has a lipophilic ester attached to the OH at C9 that enhances its lipophilicity
 additionally the trifluoroacetyl group enhances its lipophilicity
 
 rubicin = red
 
 idarubicin is lacking a substituent on position 4
 
 epirubicin is an epimer - the sugar OH is beta instead of alpha
 
 both the aglycone and the sugar is necessary for activity
 
 amino sugars (4 of the above) is important for activity (intercalation into DNA) b/c it will inize at pH 7.4 and the + will interact with phosphate in the DNA backbone
 
 [image]
 
 the aglycone portion is essentially planar and readily intercalates DNA
 
 aglycone is planar and the amino sugar is below to help stabilize the binding in its protonated form (interaction with the posphate of DNA)
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | intercalate into DNA 
 poisoning of topoisomerase II
 
 generation of oxygen free radicals (-OH, O2--, and H2O2)
 |  | 
        |  | 
        
        | Term 
 
        | metabolism of anthracyclines |  | Definition 
 
        | [image] 
 the carbonyl group on the side chain at C9 can be reduced by aldo-keto reductases
 
 the resulting alcohol is active, but it is taken up more slowly by cancer cells (more polar)
 some of the ADRs may be attributed to the OH metabolite
 
 cleavage of the glycosidic clinkage by glycosidases results in formation of the aglycone
 INACTIVE species (the amino sugar is not assisting in binding to DNA)
 
 the species can be demethylated at C4 and conjugated as the water soluble sulfate conjugate (inactive)
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 valerate ester enhances entry into cancer cells due to increased lipophilicity
 
 CF3 electron withdrawing but lipid enhancing
 
 orphan drug (used for intravesicular therapy) refractory bladder cancer
 
 little systemic absorption and the drug is excreted essentially unchanged
 
 the trifluoroacetyl group masks the amino group of the sugar and increases its overall lipophilicity
 |  | 
        |  | 
        
        | Term 
 
        | antracyclines:  generation of semi-quinone radical |  | Definition 
 
        | [image] 
 antracyclines can generate radicals by a one reduction to give a semi-quinone radical
 
 in the presence of O2, the semiquinone radical can be oxidized to the quinone and generate superoxide radical in the process
 
 CHELATING ABILITY IS AN IMPORTANT CHEMICAL PROPERTY RELATED TO THE ANTICANCER ACTIVITY OF ANTHRACYCLINES
 
 [image]
 
 the chelating ability is an important chemical property of the antracyclines
 
 oxidation of chelated Fe++ to Fe+++ by hydrogen peroxide can generate OH radicals which can fragment DNA
 
 Fe2 oxidized to Fe3 = generation of hydroxyl radical
 |  | 
        |  | 
        
        | Term 
 
        | cardiotoxicity of antracyclines |  | Definition 
 
        | [image] 
 the cardiotoxicity of the anthraquinones may be due to reduction to a hydroquinone followed by loss of the glycosidic linkage
 
 the aglycone may be responsible for the cardiotoxicity of these compounds
 
 LOW LEVELS OF CATALASE IN CARDIAC TISSUE
 
 CARDIOTOXICITY IS ATTRIBUTED TO THE AGLYCONE FORM
 
 [image]
 
 generation of hydroxyl radicals is highly desirable in treatment of cancer cells
 
 however, the heart lacks catalase and therefore the highly toxic hydroxyl radical is generated
 
 the aglycone can generate superoxide radicals upon reduction to the hydroquinone
 
 the enzyme superoxide dimutase in the presence of Cu++ can generate hydrogen peroxide
 
 in the presence of Fe++, hydrogen peroxide can oxidize the iron to Fe+++ and produce hydroxyl radicals
 
 in normal tissue, catalase can act on hydrogen peroxide to yield water and oxygen
 however, in cardiac tissue, there is low level of catalase
 
 as a result, these radicals (hydroxyl and superoxide) are highly toxic to cardiac tissue
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 contains structural feature necessary to intercalate DNA (note the relatively planar anthracenedione nucleus)
 
 chemically, mitoxantrone is an anthracenedione
 
 note that the terminal ring is missing in comparison with anthracyclines
 
 it has the necessary planar structure to intercalate DNA
 
 anthracenedione has the quinone moiety!
 
 the difference is that it does not have an amino sugar, but DOES have an amino side chain
 
 does not have a terminal ring - implies that the terminal ring is not required for activity
 
 intercalates - ring system is planar and the amino group is protonated and interacts with the phosphate backbone of DNA
 |  | 
        |  | 
        
        | Term 
 
        | structural comparison of mitoxanthrone and antracyclines |  | Definition 
 
        | [image] 
 anthracyclines and anthracenediones:
 intercalate DNA (planar structures)
 generate radicals (hydroxyl, superoxide, and hydrogen peroxide)
 topoisomerase II poison
 
 although mitoxanthrone does not contain an amino sugar unit, the terminal amino nitrogen on the side chain matches up with the amino group on the amino sugar of the antracyclines
 
 note the triangle formed among the carbonyl, hydroxyl, and side chain nitrogen in both compounds
 
 [image]
 
 reduction of the side chain carbonyl may produce some of the chronic cardiotoxicity associated with the antracyclines
 
 mitoxanthrone lacks a side chain carbonyl and is less cardiotoxic
 
 the chronic toxicity of the anthracyclines may be due in part to reduction of the side chain carbonyl at C9 to the alcohol metabolite
 
 since mitoxanthrone lacks this carbonyl group, it is less toxic
 |  | 
        |  | 
        
        | Term 
 
        | metabolism of mitoxanthrone |  | Definition 
 
        | [image] 
 the metabolism of mitoxanthrone is shown above
 
 it undergoes N dealkylation to form a primary amine
 
 this substance can then undergo oxidative deamination by P450 to yield an aldehyde
 
 the aldehyde can be further oxidized by aldehyde dehydrogenase to the inactive carboxylic acid
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | actinomycins are a group of closely related structures which contain the same chromophore 
 3-phenoxazone-1,9-dicarboxylic acid
 
 [image]
 
 highly conjugated system that incorporates an imino-quinone like moiety
 
 3 phenoxazone ring system is planar so it could intercalate into DNA
 
 no quinones in this structure but there is a carbonyl and a C=N opposite - this can generate radicals through one electron reduction
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 SAR:
 
 1.  opening of lactone ring decreases activity
 
 2.  change in stereochemistry decreases activity
 
 3.  replacement of the 4-Me and 6-me groups on the phenoxazone ring decreases activity
 
 4.  replacement of the 2-NH2 group decreases activity
 
 attached to the carboxylic acid groups at the 1 and 9 positions (via amide linkages) are peptapeptide groups
 
 the peptides contain several non-natural amino acids which makes them metabolically more stable to peptidase action
 
 the peptide is attached to the 3-phenoxazone ring via a lactone linkage
 
 this lactone group is formed from the carboxy group of L-Me Val and the side chain Thr residue
 
 ring opening of this lactone decreases the activity of dactinomycin
 
 this is b/c the peptide chain fits into the minor group in DNA
 
 when the lactone is hydrolyzed it does not bind as well in the minor groove
 
 substitution on the phenoxazone nucleus generally decreases activity
 
 BE ABLE TO RECOGNIZE LACTONES (CYCLIC ESTERS)
 |  | 
        |  | 
        
        | Term 
 
        | radical generation by dactinomycin |  | Definition 
 
        | [image] 
 the quinoneimine moiety in the 3-phenoxazone nucleus of dactinomycin can undergo a one electron reduction to form a semiquinone-imine radical
 
 this radical can be oxidized back to the quinone imine to give off an electron
 
 reaction of this electron with molecular oxygen can generate superoxide radical
 
 this radical can result in DNA strand cleavage
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | generation of radicals 
 [image]
 
 dactinomycin intercalates DNA adjacent to G-C bases
 
 the polypeptide chains extend along the minor groove stabilizing the complex
 
 main effects appears to be on topoisomerase II
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 bleomycin is actually a mixture of 2 compounds (bleomycin A2 and bleomycin B2)
 
 there are several regions in its structure that are important
 
 the metal binding portion of the structure contains several nitrogen atoms that can chelate Fe++
 
 this region of the molecule is separated from the DNA binding domain by a tripeptide linking
 
 the heterocyclic bases containing the side chains interact with DNA
 
 note that bleomycin contains 2 glycosidic linkages
 
 side chain is either a sulfonium or guanidinium - both are protonated and will interact with a phosphate on the DNA backbone
 
 part of the structure of bleomycin involved in Fe++ chelation:
 
 [image]
 
 this is a representation of bleomycin binding molecular oxygen in the metal binding domain of the molecule
 
 once bound Fe++ can generate radicals upon oxidation to Fe+++
 
 bleomycin is inactivated by bleomycin hydrolase:
 
 [image]
 
 tumor cells deficient in bleomycin hydrolase will be more sensitive to bleomycin
 
 hydrolysis of bleomycin by bleomycin hydrolase cleaves the terminal amide residue
 
 once hydrolyzed the amino acid undergoes intramolecular H-bonding and removes a site of chelation with Fe++
 
 thus, the compound is biologically inactive
 
 H bonding site to the iron is removed
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 natually occurring antitumor agent (contains quinone and aziridine groups)
 
 used in a variety of tumors (breast, stomach, esophagus, and bladder)
 
 prototype of reductively activated alkylating agents
 
 mitomycin C contains several reactive functional groups
 
 the compound contains the 3 membered aziridine ring, a quinone group, and a side chain carbamate
 
 we know that reduction of quinone functional groups can generate radicals
 
 thus, some of the effects of mitomycin may be due to radical generation
 
 [image]
 
 3 things in terms of reactivity = quinone, aziridine ring (C adjacent to the aziridine ring subject to Nu attack), and the carbamate (C linkage is subject to alkylation)
 
 mitomycin forms a reactive species capable of acting as a bifunctional alkylating agent
 
 can bind to DNA and undergo oxidation-reduction to yield H2O2
 this species can form highly reactive radicals that may cause strand cleavage of DNA
 
 mitomycin C undergoes bireductive activation
 
 as a result, the compound can serve as a bifunctional alkylating agent
 
 bioactivation of mitomycin C:
 
 [image]
 
 the bioactivation of mitomycin begins with a 2 electron reduction to conver the quinone to a hydroquinone
 
 this species then loses a molecule of methanol
 
 the movement of electrons in this hydroquinone intermediate results in the opening of the aziridine ring
 
 the 3 member ring is under considerable strain and this strain is alleviated by ring opening
 
 a nucleophilic group on one of the purine or pyrimidine bases in DNA attacks the reactive intermediate to produce an alkylated DNA adduct
 
 finally, the monoalkylated adduct is attacked by DNA to result in the loss of the carbamate group, leading to a bis-alkylated DNA adduct
 
 DNA attached to the C adjacent to the carbamate and the carbon adjacent to the aziridine ring
 
 summary of mitomycin C bioactivation and bifunctional alkylation
 
 [image]
 
 1.  reduction of the quinone to the hydroquinone (radical generation is possible)
 2.  loss of methanol
 3.  opening of aziridine ring
 4.  attachment of a nucleophile on the 5 membered ring of mitomycin
 5.  attachment of a nucleophile on the carbon bearing the carbamate group
 
 cross linking of DNA by mitomycin C
 
 [image]
 
 the cross links can be either interstrand or intrastrand
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | antracyclines and mitoxanthrone 
 dactinomycin
 
 deforms DNA and leads to interference with DNA associated proteins (polymerases, transcription factors, DNA repair systems, and topoisomerases
 
 DNA intercalating agents insert between the base pairs of DNA
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | nuclear enzymes that induce transient breaks in DNA allowing a single strand break or double strands to pass through each other 
 DNA replication
 recombination of strands
 condenstation-decondensation of chromosomes
 
 DNA topoisomerase are enzymes that play an important role in DNA replication and transcription
 
 in the tertiary structure of DNA, the long DNA molecule must be compacted to fit into the nucleus
 
 this process is termed supercoiling
 
 supercoiling requires the action of DNA topoisomerases
 
 these enzymes catalyze the act of one strand of DNA through another
 
 this is achieved by cleaving one or both DNA strands
 
 this results in a temporary gap that is resealed after crossover
 
 uncoiling must occur for replication and transcription to take place
 
 the unwinding of the strands are catalyzed by helicases
 
 the same topoisomerase responsible for the coiling are responsible for the uncoiling process
 
 thus, inhibition of topoisomerases would effectively block transcription and replication
 
 topoisomerases bind a single or double strand of DNA where 2 regions of DNA are in proximity
 
 topo II causes a break in both strands of DNA allowing the other segment of DNA to pass through this transient gap
 
 after this occurs, the enzyme catalyzes the resealing of the double strands of DNA
 
 if this process is inhibited by inhibition of topoisomerases, transcription and DNA replication is inhibited
 
 DNA topoisomerases regulate the topology of DNA and are essential for transcription
 
 topoisomerase I - DNA single strand breaks
 topoisomerase II - DNA double strand breaks and requires ATP
 
 [image]
 
 the key cleavage of the DNA strand is the action of a side chain Tyr OH group on the 3' phosphate group
 
 this is a reversible process
 
 inhibitors of DNA topoisomerases prevent the re-ligation of the DNA strand, leading to fragmentation of DNA
 |  | 
        |  | 
        
        | Term 
 
        | topoisomerase II inhibitors |  | Definition 
 
        | intercalators:  anthracyclines and mitoxanthrone 
 [image]
 
 non-intercalators:  etoposide and related analogs
 |  | 
        |  | 
        
        | Term 
 
        | epipodophyllotoxins (glycosides):  etoposide and related analogs |  | Definition 
 
        | bind tubulin, but main effect is on topoisomerase II 
 stabilize the ternary complex (DNA, drug, and enzyme), thus preventing re-ligation
 
 DNA fragments accumulate leading to apoptosis
 
 RNA transcription is also inhibited
 podophyllotoxin:
 
 [image]
 
 this compound is a LACTONE containing compound (many natural products have lactone rings)
 
 the compounds that are used as anticancer agents are epimers of this compound at position 4
 
 [image]
 
 [image]
 
 teniposide more potent than etoposide (note the presence of the 2-thienyl group in teniposide)
 
 this facilitates entry into the cancer cell
 
 both compounds are POORLY WATER SOLUBLE
 
 these compounds are lactone glycosides
 
 in the case of teniposide, the 2-thienyl group increases its lipophilicity and facilitates its entry into cancer cells
 
 both compounds are poorly water soluble
 
 the acetal group on the terminal sugar can be viewed as the reaction product between an aldehyde and the dihydroxy groups of D-glucose
 
 etopophos:  prodrug of etoposide
 
 [image]
 
 the phosphate ester enhances its water solubility
 
 the compound is activated to etoposide by the action of phaophatases
 |  | 
        |  | 
        
        | Term 
 
        | metabolism of epipodophyllotoxins |  | Definition 
 
        | [image] 
 inhibitors of CYP3A4 increase toxicity (azoles, macrolides)
 
 inducers increase clearance (phenytoin, phenobarbital)
 
 the metabolism of the epipodophyllotoxins is shown above
 
 ring opening of the lactone group yields an inactive compound
 
 additionally, CYP3A4 can catalyze the demethylation of the methyl ether to yield a caechol metabolite
 
 the catechol can be further oxidized to a quinone
 
 the quinone metabolite is an inhibitor of topoisomerase II
 
 LACTONE RING IS ESSENTIAL FOR ACTIVITY TO PREVENT TOPO II
 ortho quinone is also active and can inhibit topo II
 |  | 
        |  | 
        
        | Term 
 
        | topoisomerase I inhibitors |  | Definition 
 
        | suppressors which inhibit the enzyme, but do not stabilize the DNA topoisomerase covalent complex 
 topoisomerase poisons - act after DNA cleavage and prevent religation
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 these compounds contain both lactam and lactone functional groups
 
 [image]
 
 the camptothecins differ in their substitution at R1, R2, or R2
 
 note that topotecan or irinotecan contain basic side chains; this allows for salt formation increasing water solubility
 
 all of the compounds contain a 6 membered lacton group
 
 irinotecan is a carbamate prodrug
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 substitution is allowed in ring A at positions 9 and 10 and in ring B at position 7
 
 the lactone is necessary for activity
 
 the basic side chain increases the water solubility of these compounds
 
 once the lactone ring is opened, it is no longer active
 |  | 
        |  | 
        
        | Term 
 
        | low water solubility issues of camptothecins |  | Definition 
 
        | camptothecins have low water solubility 
 administered in large doses as a result and causes ring opening of the lactone
 
 [image]
 
 the hydroxy acid can close back to the lactone at the kidney pH
 
 as a result, it achieves high concentrations in the kidney and can react with SH containing proteins to produce hemorrhagic cystitis
 
 topotecan and irinotecan are more water soluble and don't accumulate in the kidneys
 |  | 
        |  | 
        
        | Term 
 
        | irinotecan used with 5FU first line therapy in treatment of metastatic colorectal cancer |  | Definition 
 
        | [image] 
 irinotecan is actually a prodrug
 
 the basic side chain increases its water solubuility
 
 it then undergoes bioactivation by carboxylesterases to yield a phenol (topotecan) and a carbamic acid
 
 the carbamic acid readily loses carbon dioxide to yield a diamine metabolite
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 1) conjugation with the phenol with beta-glucuronic acid
 
 2) N-demethylation
 
 3) ring opening of the lactone group to a hydroxy acid
 |  | 
        |  | 
        
        | Term 
 
        | binding of camptothecin and DNA and topoisomerase I |  | Definition 
 
        | [image] 
 this shows a binding model of camptothecin at the active site of topoisomerase I
 
 note that the lactone group interacts by ion-dipole attractions with the Arg 364
 
 this is the reason that ring-opening leads to a loss of biological activity, H-bonding is impeded
 
 IMPORTANCE OF THE LACTONE RING:  complex if formed that is an inhibitor of topo I and also needed to bind to DNA
 
 Arg 364 is very important in binding to the lactone group of camptothecin
 |  | 
        |  | 
        
        | Term 
 
        | tubulin - transport protein crucial to cell division |  | Definition 
 
        | [image] 
 transport proteins are usually not a drug target; however, tubulin is the exception
 
 tubulin is critical for cell division
 
 tubulin polymerizes to give microtubules (small tubes) in the cell cytoplasm
 
 they perform many functions including maintaining cell shape
 
 when cells are about to divide, microtubules depolymerize to give tubulin
 
 the tubulin then repolymerizes to form the spindle
 
 this is a structure that serves to push the dividing cells apart and act as a framework in which the chromosomes of the original cell is transferred to the new cell
 
 drugs that inhibit this process are effective anticancer agents
 
 the taxanes (paclitaxel and docetaxel)accelerate polymerization and stabilize the microtubules
 
 whereas, the vinca alkaloids inhibit polymerization
 
 either way, drugs that affect with equilibrium produce a toxic effect and inhibit cell division
 
 COMPOUNDS EXERT THEIR EFFECTS BY DISRUPTING THE TUBULIN EQUILIBRIUM:
 BINDS TO TUBULIN AND INHIBITS POLYMERIZATION - VINCA ALKYLOIDS
 BIND TO MICROTUBULES AND INHIBIT DEPOLYMERIZATION - TAXANES
 
 microtubules are hollow structures composed of 13 parallel protofilaments composed of alpha and beta tubulin
 
 tubulin dimers polymerize during mitotic spindle formation
 
 the microtubules depolymerize during cell division
 
 thus, this is a dynamic equilibrium
 
 compounds can act on microtubules to stabilize or destabilize them or bind to tubulin to inhibit polymerization
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 the vinca alkaloids are found in the periwinkle plant
 
 the complex molecules are described as alkaloids
 
 that is, they are basic naturally occurring compounds
 
 the upper ring contains the heterocycle indole and is designated as the catharanthine ring
 
 the bottom ring contains an indoline ring and is designated vindoline
 
 vincristing and vinblastine are vinca alkaloids
 
 vinblastine is more lipophilic and better entry into cell
 
 vinca alkaloids bind tubulin at high and low affinity sites
 
 binding at the high affinity site affects both lengthening and shortening of the spindle, thereby affecting its function
 
 binding at the low affinity site (at high drug concentration) leads to a breakdown of the spindle as tubulin depolymerizes)
 
 the vinca alkaloids bind tubulin at sites different from the taxanes and the epithilones
 
 at low concentrations of the drug, the vincas bind to the high affinity site and prevent lengthening and shortening of the miotic spindle
 
 thus, the spindle function is disrupted
 
 at high concentration, the vinca alkaloids cause the mitotic spindle to breakdown as tubulin depolymerizes
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 1) both rings are required for activity
 
 2)  the OH group at C4' can be replaced by a double bond.
 
 3)  the bridge between the indole ring in the catharanthine ring and the basic 6 membered ring can be 1 or 2 carbons
 
 4)  hydrolysis of the 4 acetate ester yields an active OH metabolite
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 vinorelbine and vinblastine are more lipophilic than vincristine and enter the cell more readily
 
 both the catharanthine and vindoline components are required for activity
 
 the presence of the methyl group on the indoline nitrogen increases lipophilicity of vinblastin and vinorelbine
 
 this enhances their ability to pass through cell membranes
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 binds to unique site on tubulin
 
 suppresses microtubule polymerization
 
 causes irreversible miotic block leading to cycle arrest and apoptosis
 
 does not effect depolymerization
 
 also, it sequesters tubulin into nonfunctional aggregates
 
 by inhibiting mitotic spindle formation, eribulin causes irreversible miotic block, which ultimately leads to cell cycle arrest in the G2-M phase and apoptosis
 
 amine increases water solubility
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 trabetedin contains 2 fused tetrahydro isoquinoline rings linked by a benzylic sulfide that is attached to a third tetrahydroisoquinoline ring
 
 in contrast to traditional alkylating agents that bind guanine at N7 or )6 positions, trabectedin binds the exocyclic amino group of guanine at the C2 position
 
 this occurs in the minor groove of DNA
 
 the resulting adduct is stabilized by van der waals interactions and one or more hydrogen bonds between trabectedin and the neighboring nucleotides in the strads of DNA, thus creating a functional crosslink
 
 binding model of trabectedin in the minor groove of DNA:
 
 [image]
 
 after loss of OH, a reactive intermediate is formed
 
 this species undergoes reaction with the C2 amino group of a guanine residue in the minor groove of DNA
 |  | 
        |  | 
        
        | Term 
 
        | taxanes (mitosis inhibitors) |  | Definition 
 
        | microtubule stabilizing agents binding at the taxane site 
 the taxanes are diterpenes
 
 these compounds are derived from 4 isoprenoid units to give a C20 skeleton
 
 the pacific yew and the English yew are sources of taxanes
 
 [image]
 
 the English yew is a much better source of paclitaxel than the pacific yew
 
 the compound 10-decaethylbaccatin III can be obtained from the English yew
 
 this compound can be converted into paclitaxel or docetaxel by semi synthesis
 |  | 
        |  | 
        
        | Term 
 
        | SAR of taxol and related taxoids |  | Definition 
 
        | [image] 
 northern half substitutions not that specific
 
 southern half substitutions are important
 
 3'N important for binding to tubulin
 
 ester at 2' and OH has to be alpha
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 note that the tert-butyl group in docetaxel replaces a phenyl ring
 
 this suggests that it is binding to some lipophilic site at its target site
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 a variety of metabolites are possible with paclitaxel
 
 the major metabolite is the 6 alpha OH metabolite
 
 hydroylsis of the acetate at C10 yields an active metabolite
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 docetaxel is hydroxylated by CYP3A4 on the methyl group of the tert-butyl group
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | [image] 
 binds to and stabilizes microtubules
 
 prevents microtubule depolymerization and cell division
 
 cabazitaxel used in combination with prednisone for metastatic castration-resistant prostate cancer for patients previously treated with docetaxel containing regimen for late state disease
 
 a difference between cabazitaxel is, that unlike docetaxel, it is a poor substrate for Pgp
 
 Pgp is thought to contribute the the constitutive and acquired resistance of cancer cells to taxanes
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 4 major 16 membered macrolide antibiotics 
 highly active in producing cell arrest at G/M phase resulting in apoptosis
 
 [image]
 
 stabilize microtubules triggering apoptosis
 
 effective against multiresistant tumor cells
 
 the key functional groups in the compound are 1) epoxide 2) thiazole 3) ketone
 
 these compounds are macrolides (16 membered lactone ring)
 |  | 
        |  | 
        
        | Term 
 
        | advantages of epothilones over taxols |  | Definition 
 
        | higher potency in some cases 
 active against some taxol resistant cell lines
 
 higher aqueous solubility
 
 simpler structures
 
 [image]
 
 epothilones have greater water solubility compared to taxol
 
 the lactone ring can be opened up by hydrolysis to yield an inactive compound
 
 the epoxide group is not essential for activity
 
 a methyl group at position 12 leads to an increase in activity
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        | Term 
 | Definition 
 
        | [image] 
 semi synthetic analog of epothilone B
 
 metabolically more stable than epothilone B
 
 low susceptibility to multi drug resistance protein mediated efflux
 
 balance needed to maintain therapeutic concentration in tumor cells, but to minimize GI toxicity
 
 low plasma protein binding
 
 increased water solubility
 
 the presence of a lactam group instead of lactone renders the compound more metabolically stable
 
 increased water solubility due to both H bond donors and acceptors present
 
 t1/2 52 hours
 
 CYP3A4 inhibitors can decrease metabolism and may increase risk of toxicity
 
 metabolic stability of ixabepilone:
 
 [image]
 
 by inserting the lactam it is more stable to hydrolysis than the lactones
 
 ixabepilone leads to microtubulin stabilization leading to G2/M arrest and induction of apoptosis
 
 [image]
 
 ixabepilone binds to beta tubulin contained in microtubules
 
 the microtubules are stabilized leading to apoptosis
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        | Term 
 
        | binding of taxol and epothilone B to beta-tubulin |  | Definition 
 
        | taxol and the epothilones do not share a common pharmacophore 
 His 227 on beta tubulin plays an important role in binding the compound to the active site
 
 taxol does not bind in an identical fashion
 
 also, Arg 276 and Thr 274 form H bonds with the carbonyl groups of ixabepilone
 
 a key interaction in taxol is the interaction of the oxetane ring with Thr 274
 
 overall, epothilone B occupies a much smaller binding cavity compared to taxol
 
 epothilone:  thiazole ring is important for activity - interaction of H bonding with histadine - important for binding beta tubule
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