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GIT Infections
N/A
80
Microbiology
Post-Graduate
04/07/2012

Additional Microbiology Flashcards

 


 

Cards

Term

Identify Cell Morphohlogy of

 Helicobacter pylori Gastritis

Definition
  • Gram -, Vibrio shaped, rod
  • motile
  • acid tolerant
  • microaerophilic
  • non-invasive
Term

Identify Virulence Factors for

Helicobactor pylori Gastritis

Definition
  • Ability to produce Cytoxin A (VacA) required for ulcer formation
  • pathogenicity island produces CagA - induces IL-8->cancer
  • LPS cross-reacts w/ host Ag -> Ab-> cancer
  • Acid tolerent due to production of copious amts. of usease
Term

Identify the epidemiology of

Helicobactor pylori Gastritis

Definition
  • 1 of the most prevalent bacterial infections
  • Humans = reservoir
  • Transmission-> fecal-oral; gastric-oral; oral-oral
  • Age+Gender-> carriage increases w/ age; NO gender differences
  • Responsible for ALL type B gastric + duodenal ulcers (class I carcinogen, cancer can occur w/o ulcer)
Term

Identify Clinical Manifestations of

Helicobacter pylori - Gastritis

Definition
  • Abdominal pain
  • Hematologic changes (idiopathic thrombocytopenic purpura, iron def., anemia
Term

How do you diagnose

Helicobacter pylori Gastritis?

Definition
  • Invasive(GOLD STANDARD) -> Endoscopy or esphagogastroduodenscopy
  • Non-invasive: Breath test (13C) Urea; ELISA or LA; Stool Ag test detected by monoclonal Ab
Term

What is treatment for

Helicobacter pylori Gastritis?

Definition
  • Combo, sequential, or both
    • Bismuth salts
    • Metronidazole or Tinidazole
    • Tetracycline or amoxicillin
    • Anti-secretory therapy may enhance healing
    • protonix, clarithromycin, amoxicillin

TREAT ALL PERSONS INFECTED!!

Term

What are MO associatde w/ afebrile

watery diarrhea?

Definition
  • Vibrio cholerae
  • Enterotoxigenic E. Coli
  • Aeromonas Sp.
Term

What is cell morphology + metabolism

of Vibrio cholerae?

Definition
  • Gram -, vibrio shaped, rod
  • halophile
  • falcultative anaerobe
  • non-invasive
Term

How do you classify

Vibrio cholerae?

Definition
  • O-Antigens
    • Type O-1 - classical
    • Type O139 - new
Term

What are the virulence factors

of Vibrio cholerae?

Definition
  • Heat labile, ENTEROtoxin ->
    • Stimulates activty of adenylatre cylase (which converts ATP to cyclic AMP -> Diarrhea)
Term

What is epidemiology of

Vibrio cholerae?

Definition
  • Humans + zooplankton = Resevoir
  • Vehicle is FOOD + WATER
  • Seasonality -> warmer months
  • travelers to endemic or epidemic area are @ high risk!
Term

Describe the pathogenicity of

Vibrio cholerae

Definition
  • Incubation = 1-5d
  • HIGH dose MO
  • Diseae of small intestine - grows in lumen of small intestine + elaborates ENTEROtoxins -> fluid + electrolyte loss in feces (1L/h)
    • hypovolemic shock
    • metabolic acidosis
    • hemoconcentration
Term

What are the clinical manifestations of

Vibrio cholerae?

Definition
  • Abrupt onset
  • effortless vomiting
  • profuse water diarrhea assuming rice water appearance w/ flecks of floating mucus + possess a sweet fishy odor
  • little if any fever
  • Fluid loss in feces maybe 1L/h (hypovolemic shock, hemoconc., + metabolic acidosis)
Term

How does lab diagnose

Vibrio cholerae?

Definition
  • micorscopic exam of stool for presence fo commma-shaped MO + absence of fecal leukocytes
  • culture
  • serological confirmation
Term

What is the treatment for

Vibrio cholerae?

Definition
  • Supportive -> rehydration
  • Tetracycline is used to shorten the duration + carrier state
Term

What are virulence factors

of Enterotoxigenic E. coli (ETEC)?

 

Definition
  • Plasmid encoded ENTEROtoxins
    • LT toxin
      • heat labile, antigenically/strucaturally similar to + same moa as cholera enterotoxin
    • ST toxin
      • NON-antigenic -> stimulates guanylate cyclase -cGMP system
Term

What is epidemiology of

Enterotoxigenic E. coli (ETEC)?

Definition
  • WW incidence
  • Cause of traveler's + weanling's disease
  • Vehicle - FOOD + WATER
  • Transmission -> Fecal-oral
Term

What is the pathogencity of

Enterotoxigenic E. coli (ETEC)?

Definition
  • HIGH dose MO
  • Incubation period -> 1-2d
    • similar mechanism as V. cholerae
Term

What are the clincal manifestations

of Enterotoxigenic E. coli (ETEC)?

Definition
  • Spectrum of clincal mani. is like cholera -NOT as severe
  • aburpt onset of diarrhea which last 1-3d
Term

What are some prevention and treatment measures

for Enterotoxigenic E. coli (ETEC)?

Definition
  • Prevention: pepto-bismol OR Rifaximin
  • Treatment: TMZ + Rifaximin
Term
What are food-borne diseases?
Definition
  • Staphlococcus aureus
  • Bacillus cereus
  • Clostridium perfringens, type A
Term
What is etiology of staphlococcal aureus?
Definition
  • Characteristics: Coagulase +, Gram + cocci in clusters
  • ENTEROtoxin: water-soluble, heat stable, colorless, odorless, + tasteless
Term

What are epidemiology factors of

Staphylococcal aureus?

Definition
  • Humans = Reservoir + Source
  • Mode of intoxication:
    • toxin is produced by S. aureus growing in improperly prepared food
    • Persons ingests the pre-formed toxin in: custard filled baked goods, potato salad, canned foods, processed meats, meat pies
Term

What is pathogenicity of

Staphlococcal aureus?

Definition
  • Incubation period = 1-6h post-ingestion
  • Enterotoxin is absorbed in gut
  • disseminates to the CNS
  • acts on vomiting center
Term

What are clincal manifestations of

Staphlococcal aureus?

Definition
  • symptoms last <12h
    • nausea, acute salivation, pronounced vomiting, less pronounced diarrhea may occur, abdominal cramps, illness is SELF-LIMITING -> recovery 1-4d
Term

How do I diagnose

Staphlococcal aureus?

Definition
  • Short incubation period- NO neurological signs, NO fever
  • Epidemiological investigations
  • Test entertoxin
  • Phage typing of MO
Term

What is morphology + metabolism

of bacillus cereus?

Definition
  • Gram +, spore forming rod
  • produces 2 ENTEROtoxins
Term

What is the epidemiology of

bacillus cereus?

Definition
  • WW distribution, in soil
  • spors are found on
    • grains - rice
    • potatoes
    • vegis
Term

What is pathogenicity and clinical

manifestations of bacillus cereus?

Definition
  • Emetic form: food poisining caused by heat-stable ENTEROtoxin produced in food
  • Diarrheal form:food poisining caused by heat-labile ENTEROtoxin -> production of adenylate cyclase in small intestine
    • symptoms 10-12h post ingestion + last <24h
    • SELF- LIMITING
    • profuse watery diarrhea, abdominal cramps, pain, less pronounced N/V may occur
Term
How to diagnose bacillus cereus?
Definition
  • Suspect B. cereus food poisoning whenever upper GI illness develops 1-5 hours after eating, or lower-intestinal-tract illness develops 6-24h after eating
  • Diagnosis is confirmed by detecting, quatitating, and identifying large #s of this aerobe in the incriminated food + pt's feces
Term

What is cell morphology + metabolism

Clostridium perfringens, type A?

Definition
  • Gram +, spore forming rod
  • anarobic
  • produces ENTEROtoxin
    • heat labile, acid labile, protein
    • toxin produced in gut
      • toxin inhibit glucose + Cl- absorption
Term

What is epidemiology of

Clostridium perfringens, type A?

Definition
  • WW - common in: soil + the gut of humans + other animals
  • Food-borne disease is associated w/ ingestion of: meat, poultry, meat or poultry gravy
Term

What is pathogenicity of

Clostridium perfringens, type A?

Definition
  • Heat labile ENTEROtoxin produced in gut agter ingestion of food containing large # of MO
Term

What are the clincal manifestations

of Clostridium perfringens, type A?

Definition
  • Lower GI symptoms appear 10-12h after ingestion of contaminated food
  • SELF-LIMITING
  • symptoms last <24h
  • Symptoms -> profuse water diarrhea, abdominal cramps/pain, less pronounced N/V may occur
Term

How to diagnose

Clostridium perfringens, type A?

Definition
  • confirmed by detecting, quantitating, and identifying larger #s in the incriminated food + pt's feces
Term
What are the 4 afebrile
intestinal protozoans?
Definition
  • Giardia lamblia
  • Cryptosporidium parvum
  • Cyclospora spp. Isospora
  • Microsporidia
Term

what is pathogenicity of

Giardia lamblia?

Definition
  • Trophozoites adhere to mucose of upper small intestine but do NOT invade - they interfere w/ absorption of fat + protein
Term

What are clincal manifestations

of Giardia lamblia?

Definition
  • Asympotomatic cyst passers
  • Acute infection-> 3-4d w/ little or no fever, watery, greasy, foul smelling stools, nausea, abdominal distension, flatulence
  • Chronic infection-> ≤2yrs ->abdominal pain + distension, greasy foul-smelling stools (malabsorption), wt. loss
Term

How is

Giardia lamblia, Cryptosporidium parvum, Cyclospora spp. Isospora, + Microsporidia transmitted?

Definition
  • Fecal-Oral route via FOOD or WATER
  • Giardia lamblia + Cryptosporidium -> DIRECT contact OR sexually (oral-anal sex)

Term

What is etiology of

Cryptosporidium parvum + cyclospora spp.?

Definition
  • Acid-fast
  • broad host range
  • Obligate intracellular parasite
  • undergo sexual reproduction-> producing oocysts
Term

who do the clinical manifestations affect

for Cryptosporidium parvum + cyclospora spp.?

Definition
  • immunocompetent hosts
    • explosive, profuse watery diarrhea w/ vomiting + flatulence + self-limiting
    • duration ~2wks
  • immunocompromised hosts
    • prolonged, severe, watery diarrhea w/ wt. loss >2mo w/ dissemination to all of GI tract, liver, pancreas
    • symptomatic resp. infections can occur
Term

 

 

 

What are etiologic agents of Cyclospora spp?

Definition

(LIKE crytosproidium)

 

  • Mildly acid-fast
  • have intracellular as well as extracellular existance 
 
Term

What is the epidemiology of

Cyclospora spp.?

 

 

(i.e. incidence + prevalance)

Definition
  • Highest incidence in natives + travelers to Asia + S. America 
Term
How to diagonose Cyclospora spp.?
Definition
  • Microscopic examinations (LARGE oocytes)
      • U.V floresence
  •  Acid Fast +
Term
How to prevent Cyclospora spp.?
Definition
Properly clean fruits
Term

What is MOST common cause of chronic

diarrhea in HIV/AIDS pt?

Definition

Microsprodidians - Enterocytozoan bieneusi, Encephalitzoon spp. are causes of chronic diarrhea in the immnocompromised

 

They ARE the MOST COMMON cause of chronic diarrhea in HIV/AIDS pts.

Term

How to diagnose

Microsporidians (Enterocytozoan bieneusi, Enchpalitozoon spp.)?

Definition
O + P w/ modified trichrome stains
Term
What are the 2 diarrheas presenting w/ OR w/o fever?
Definition
  • STEC - Shinga-producing E. Coli
  • EHEC 0157:H7 - Enterohemorrhagic E. coli 
Term

 

 

What is epidemiology of STEC - Shinga-producing E. Coli + EHEC 0157:H7 - Enterohemorrhagic E. coli ?

Definition
  • Zoonosis
  • Food-borne outbreaks + sporadic cases occur
  • Childern + eldery more commonly affected
  • peaks in warmer months
  • RISK FACTORS: undercooked beef, raw milk, _ unpasteurized A.J., + poor personal hygiene 
Term

T/F

STEC + EHEC are non-invasive

Definition
TRUE
Term

What are the clinical manifestations

of EHEC + STEC?

Definition
  • Afebrile bloody diarrhea
    • Become bloody after 1-3d
    • may have cramps, N/V, w/ fever in 1/2 pts.
    • 1/3 of pts HAVE fecal leukocytes 
Term
What is a comlication of EHEC + STEC?
Definition
  • HUS
    • Microangiopathis hemolytic anemia
    • thrombocytopenia
    • acute renal failure
    • CNS involvement
  • Mortatlity is HIGH
  • Toxemia
  • Toxinn is potentiated by TMX-SMX in vitro + in vivo!!!
Term
How to diagnose EHEC + STEC?
Definition
Culture on MacConkey's agar w/ sorbitol
Term
What is treatment for EHEC + STEC?
Definition
Supportive ONLY!!!
Term
What is etiology of Entamoeba histolytica?
Definition
  • invasive
  • anarobic
  • eucaryotic protzoan
  • FORMS CYSTS -- infectious form - LOW dose MO
  • consumes human RBC
  • Virulence Factors-> produce soluble cytotoxins -lyse PMNs
Term
What is epidemiology of Entamoeba histolytica?
Definition
  • Humans are the difinitve host and ONLY reservior
  • LOW dose MO
  • Transmitted -> fecal/oral(food/water), direct contact, sexually (oral/anal sex)
  • RISK GROUPS: travelers to endemic coutnries SE Asia, persons who practice oral/anal sex 
Term

What are clincal manifestations of

Entamoeba histolytica?

Definition
  • Acte amebic colitis (varies): bloody,loose watery diarrhea, abdominal pain, urgency to defecate, fever + constituational symptoms seen in many
  • Extrainsetinal amoebiasis: Mostly necrotic amebic liver abscess (symptoms: upper right quadrent pain, fever, pleuritic pain, liver involvement-liver faulure s/s of hepatitis) 
  • NOT self-limiting
Term
How to diagnose Entamoeba histolytica?
Definition

Detection of trophozoites in diarrhea or cysts in formed stools

 

Few fecal RBC + WBC

Term
How should I treat Entamoeba histolytica?
Definition
Metronidazole
Term

What is cell morphology of

Bacillus anthracis?

Definition
  • Gram + box car shaped rod
  • spore former
  • aerobic
  • encapsulated
  • facultative intracellular pathogen
  • produced exotoxins 
Term

T/F

Bacillus anthracis is a disease of herbivores

Definition

TRUE

Enzootic disease:

  • Sheep
  • Goats
  • Cattle
  • Horses 
Term

How is Bacillus anthracis

transmitted?

Definition
  • Bacillus anthracis is excreted from infected animals in: feces, urine, + saliva
  • Spores can surive for YEARS in the soil
  • Disease requires DIRECT contact w/            -> contaminated soil, infected animals, or animal products bearing spores 
Term

What are clinical manifestations of

Gastrointestinal Bacillus anthracis?

Definition
  • fever
  • N/V
  • diarrhea
  • GI pain
  • bleeding 
Term

What is morphlogy and characteristics of

Clostridium difficle?

Definition

Gram +, anaerobic, spore forming rod

Most produce cytotoxin (toxin A or Toxin B or BOTH)

Term

How is Clostridium difficle

transmitted?

Definition

person-to-person

Via fomites

Term

What are pre-disposing factors of

Clostridium difficle?

Definition
  • hospitalization (malnutrition, debilitation, bedridden)
  •  Antibiotic therapy for ID
  • antacids, PPI
  • Elderly + females disproportionately affeted (more)
Term

What are the 4 clincal forms of

Clostridium difficle?

Definition
  • short-term colonization
  • acute diarrhea
  • fulminant diarrhea
  • recurrent C. difficle infection
Term

Symptoms of AAD Clostridium difficle?

(AAD- Antibiotic associated diarrhea)

Definition

Diarrhea

  • Sometimes accompanied by lower abdominal cramping w/ NO systemic signs!
Term

What are symptoms of AAC Clostridium difficle?

(AAC - Antibiotic associated colitis)

Definition
  • Profuse, debilitating diarrhea (foul-smelling, greenish colored) w/ abdominal pain + cramping
  • Systemic signs (fever, anorexia, malaise, dehydration)
  • NO pseudomembrane 
Term

Symptoms of AAPMC Clostridium difficle?

(AAPMC - Antibiotic associated pseudomembrane colitis)

Definition
  • symptoms of AAC - MORE severe
  • presence of classical pseudomemraneous colitis -> elevated yellowish plaques scattered over the inflamed areas of the muscose when viewed in sigmoid or coloic endoscopic exam 
Term
How to diagnose Clostridium difficle (CDI)?
Definition
  • CDI should be suspected in any person w/ diarrhea who has recieved antibiotics <2mo +/or whom diarrhea began >72h after hosp.
  • gram stain stool
  • EIA + latex aggulation
  • Cytotoxin assay - most specific
  • stool culture - most sensitive
  • endoscopy
  • differential 
Term

What is treatment for

Clostridium difficle?

Definition

Supportive!

  • STOP antibiotic treatment is possible
  • vanco, metronidazole, or tinidaxole can be used
  • probiotics 
Term

What are some preventative measures for

Clostridium difficle?

Definition
  • Barrier precautions
  • isolation of pt
  • careful cleaning - sporicidal agents (bleach)
  • Hand hygiene (sanitizers do NOT eradicate Clostridium difficle) 
Term

What is seasonality of:

Rotovirus

Norwalk

Norovirus

Definition
  • Rotovirus -> winter
  • Norwalk -> summer
  • Norovirus -> summer (but ALL year round)

 

Term

How are Rotovirus, Norwalk,Norovirus

tranmitted?

Definition
  • fecal/oral route
  • food + water can be vehicles 
Term

What are manifestations of Rotovirus,

Norwalk, + Norovirus?

Definition
  • diarrhea
  • acute vomiting
  • fever
  • abdominal pain
  • Durations:
    • Rotovirus 5-7d
    • Norwalk 1-2d
    • Norovirus 1-2d

 

Term

What is treatment for

Rotovirus, Norwalk,+ Norovirus?

Definition

Supportive!

** NOTE ** child can NOT digest disaccharides --            NO MILK!! 

Term

What are virulence factors of

Shigella spp.?

(Bacillary Dysentery)

Definition
  • Surface 0 antigens (allows MO to INVADE)
  • shiga toxins (irreversable inactivation of EF-1 + Y-interferon
Term

What is etiology of

Shigella spp.?

(Bacillary Dysentery)

Definition
  • Gram -, NON-lactose fementing, non-motile, enteric bacilli
  • facutlative intracellular pathogen
  • 4 species based on serology
    • S. dysenteriae, group a
    • S. flexneri, group b **
    • s. boydii, group c
    • s. sonnei, group d **

**more common in US

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