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genetics2
test 1a
50
Biology
Undergraduate 4
09/18/2009

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Term
what is a primer?
Definition
A primer is a polynucleotide with a “free 3´OH end”
In normal DNA replication, this is RNA
Term
What is a substrate?
Definition
To make DNA, a polymer, monomers are needed
Nucleotide triphosphates (NTPs) are the monomers
Term
What is the direction of dna synthesis?
Definition
5' to 3'
Term
what makes RNA to start synthesis?
Definition
Primase
Term
what is a leading strand?
Definition
5' to 3' pol III con. adds nuleotides
Term
what is a lagging strand?
Definition
3' to 5' primase reads DNA and adds RNA, this will make okazaki fragments, pol I removes RNA and replaces with DNA, ligase joins the DNA
Term
what does helicase do?
Definition
break hydrogen bonds between base pairs
Term
what is a okazaki fragment?
Definition
short strand of DNA on the lagging strand
Term
how does ligase work?
Definition
it uses covalent bond to get a 3' end to a 5' end with one phosphate group
Term
Eukaryote replication enzymes?
Definition
Pol α creates RNA primer, adds some DNA, Pol ε proofreads
Term
what is the telomere problem?
Definition
DNA is lost at the ends of the linear eukaryotic DNA because of the removal of primers
Term
solution to telomere problem?
Definition
telomerase contains guide RNA codes to DNA
Term
what is G quartet base pairing?
Definition
remaining ss strand will pair with itself 2 G-G
Term
how big is e. coli chromosome?
Definition
1.2mm
Term
proteins associated with DNA packaging for e. coli?
Definition
HU, FIS, IHF, HNS
Term
what is a nucleoid?
Definition
a region in the cytoplasm rich in DNA and protein; comparable to a nucleus but without a membrane
Term
what is the function of IHF?
Definition
bending
Term
what is the function of FIS?
Definition
bending
Term
what is the funciton of HNS?
Definition
compaction
Term
what is the function of HU?
Definition
wrapping
Term
what are Topoisomerases?
Definition
enzymes that unwind and wind DNA, in order for DNA to control the synthesis of proteins, and in order for DNA to reproduce. They cut the DNA, and at the end of the process connect it again
Term
what is underwound DNA?
Definition
negative supercoiling
Term
how are mitochondria and chloroplasts alike?
Definition
they both have DNA, DNA s circular, self replicate, have their own ribosomes
Term
what are polytene chromosomes?
Definition
DNA goes through many rounds of replication producing synapsed sister chromatids
Term
where do you find polytene?
Definition
salivary glands in drosophila flies
Term
what is the largest human chromosome?
Definition
82mm long
Term
how short does DNA get during metaphase?
Definition
10 micrometers
Term
histone proteins accosiated with nucleosomes?
Definition
H2A, H1, H2B, H3, H4
Term
what are histones?
Definition
the chief protein components of chromatin. They act as spools around which DNA winds
Term
how many base pairs wrap around the histone octet?
Definition
145
Term
how many total base pairs per nucleosome?
Definition
200
Term
what is cytidine?
Definition
nucleoside molecule that is formed when cytosine is attached to a ribose ring, is a componet of RNA
Term
what is a nuclease?
Definition
enzyme that breaks down nucleic acid, exo-breaks bonds at end of chain, endo in the chain
Term
Heterochromatin?
Definition
DNA which tends to be highly compacted and dark staining, found in centromeres and telomeres. Also, much of Y chromosome
Term
Euchromatin?
Definition
is not so compacted or dark
Term
which base pairs are more dense?
Definition
G-C
Term
why is centrifugation used?
Definition
to find G-C%
Term
what is Cot?
Definition
DNA concentration x (time)
Term
what % of DNA code for proteins?
Definition
3%
Term
types of DNA?
Definition
ALU-300bp, alpha satellite-170bp, VNTR-15-100bp, dinucleatide repeats
Term
what are chromosomes?
Definition
Consist of nuclear DNA packaged with histone proteins
DNA not normally visible (chromatin) until mitosis.
During mitosis, DNA is condensed; chromosomes can be visualized by staining.
Each chromosome has a characteristic appearance so you can tell them apart.
In diploid organisms, chromosomes come in pairs (one from each parent), are called homologous chromosomes
Term
what is the centromere?
Definition
an area of highly condensed DNA to which the spindle attaches during mitosis
Term
what is the telomere?
Definition
the area at the end of the “arms” of the chromosome.
Term
dark bands consist of?
Definition
condensed DNA
Term
what is the short arm of the chromosome?
Definition
p arm
Term
metacentric?
Definition
centromere near middle
Term
submetacentric?
Definition
offset middle centromere
Term
acrocentric?
Definition
centromere near end
Term
telocentric?
Definition
centromere at the end
Term
acentric and dicentric?
Definition
no centromere & two centromeres
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