Shared Flashcard Set

Details

Genetics Exam 3
N/A
48
Biology
Undergraduate 3
03/18/2012

Additional Biology Flashcards

 


 

Cards

Term
virus
Definition
small infectious particle that contains nucleic acid surrounded by a capsid of proteins
Term
self assembly
Definition
nucleic acid and capsid proteins spontaneously bind to each other to form a mature virus
Term
directed assembly
Definition
requires the involvement of non-capsid proteins to direct the proper assembly of the virus
Term
scaffolding proteins
Definition
catalyze assembly process
Term
protease-like proteins
Definition
cleave viral capsid proteins into smaller units which allows for correct assemblages
Term
structural gene sequence
Definition
encodes for proteins
Term
intergenic regions
Definition
non-transcribed regions
Term
origin of replication
Definition
unique DNA sequence at which replication is initiated
Term
underwinding
Definition
left handed and produces negative supercoiling
Term
overwinding
Definition
right handed and produces positive supercoiling
Term
topoisomers
Definition
strands that only differ with regards to supercoiling
Term
DNA Gyrase
Definition
AKA topoisomerase II; induces negative supercoil and relaxes positive supercoil; critical for survival of bacteria
Term
Topoisomerase I
Definition
relaxes negative supercoil
Term
unique or non repetitive sequences
Definition
sequences only found once or a few times within a genome
Term
moderately repetitive sequences
Definition
sequences found a few hundred to several thousand times in the genome
Term
highly repetitive sequences
Definition
those found tens of thousands or even millions of times in the genome
Term
rate of renaturation
Definition
the amount of time it takes a denatured DNA double strand to come back together
Term
nucleosome
Definition
8 histone proteins plus 146 base pairs
Term
linker region
Definition
connects nucleosomes
Term
chromatin fiber
Definition
composed of 6-8 nucleosomes that associate with each other to form a more compacted structure that is 30nm in diameter
Term
SARs and MARs
Definition
scaffold-attachment regions and matrix-attachment regions that bind to specific proteins in the nuclear matrix causing loops to form
Term
radial loop domains
Definition
formed when 30nm fibers interact with the nuclear matrix to form loops
Term
euchromatin
Definition
less condensed regions capable of gene transmission
Term
heterochromatin
Definition
tightly compacted regions of chromosome that are generally transcriptionally inactive
Term
constitutive heterochromatin
Definition
always heterochromatic and permanently inactive with regards to transcription
Term
facultative heterochromatin
Definition
has the ability to convert between heterochromatin and euchromatin (i.e.Barr body)
Term
HATs
Definition
histone acetyltransferases that add an acetyl group
Term
HDACs
Definition
histone deacetylases remove an acetyl group
Term
SMC proteins
Definition
structural maintenance of chromosome proteins; use ATP to catalyze changes in chromosome structure
Term
condensin
Definition
promotes greater compaction of radial loops
Term
condensin type II
Definition
located in cell nucleus and is involved in early chromosome condensation of prophase
Term
condensin type I
Definition
located in cytoplasm and gains access to chromosomes only after the nuclear membrane breaks down
Term
cohesin
Definition
promotes binding between sister chromatids
Term
DnaA box
Definition
serves as binding site for the DnaA protein
Term
DnaA protein complex
Definition
causes the AT-rich region to separate
Term
DnaC proteins
Definition
bring helicase enzymes (AKA DnaB) to bind to the denatured AT-rich region and begin strand separation
Term
SSB proteins
Definition
bind to single stranded DNA and keep it from binding back together before replication occurs
Term
Polymerase III
Definition
synthesizes leading strand and elongates RNA primer on lagging strand
Term
Primase
Definition
synthesizes the RNA primer on the lagging strand
Term
Polymerase I
Definition
excises RNA primer and fills gap with DNA bases
Term
DNA ligase
Definition
links Okazaki fragments to form a continuous strand
Term
Tus protein
Definition
binds to the termination sequences and stops the replication fork
Term
T1 ter sequence
Definition
allows advancement of clock-wise moving forks but stops counter clock-wise forks
Term
T2 ter sequence
Definition
allows advancement of counter clock-wise moving forks but stops clock-wise forks
Term
cantenanes
Definition
two or more circular DNA molecules that have become interlocked and intertwined
Term
primosome
Definition
DNA helicase + primase
Term
replisome
Definition
primosome + two DNA polymerase holoenzymes
Term
Dam enzyme
Definition
DNA adenine methyltransferase
Supporting users have an ad free experience!