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GENE 3000
Evolutionary Biology
42
Biology
Undergraduate 3
02/11/2009

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Term
The Modern Synthesis
Definition
Main proponents: Fisher, Haldane, and Wright
Showed that selection acting to change gene frequencies could account for evolution
Term
The Modern Synthesis integrated these areas:
Definition
Genetics, systematics, paleontology, plant biology, cytology, and ecology
Term
Orthogenesis
Definition
Life has an innate tendency to move in a unilinear fashion due to some internal or external driving force
Term
Mutationism
Definition
Emphasizes mutation as a creative principle and source of discontinuity in evolutionary change
Term
Saltationism
Definition
A sudden change from one generation to the next
Term
Neo-Lamarckism
Definition
An organism passes on attributes attained during its life to its offspring
Term
Color absorption: Plants only
Definition
anthocyanins
Term
Color pigments: animals and plants
Definition
Carotenoids: yellow to deep orange
Melanin: black to dark brown
Term
Six crop plants bred from wild mustard
Definition
Kohirabi, Kale, Broccoli, Brussels sprouts, Cabbage, and Cauliflower
Term
Achondroplasia
Definition
Autosomal dominant trait that causes dwarfism in 0.6-1.3 mutations/100,000 gametes
Term
Huntington's Disease
Definition
A genetic disorder located on one gene which causes jerky movements and a decline in brain function

Occurance: 0.5 mutations/100,000 gametes

Repetition of CAG sequence, which codes for glutamine
Term
Heterozygosity (h)
Definition
The frequency of heterozygotes at a given locus

Measured as: (# of heterozygotes at a locus)/(total number of individuals assayed)
Term
Homeotic Genes
Definition
Specify the anterior and posterior of the organisms during early embryonic development

Ex: eye mutation in drosophila or antennapedia in ants
Term
Process of Gel Electrophoresis
Definition
1.) Collect animals
2.) Grind up tissue
3.) Separate proteins in starch gels
4.) Stain for enzyme
5.) Record allozymes
Term
Horshoe crap
Definition
Data allow test of evolutionary hypothesis about genetic variability in "living fossils"
Term
Recombination of Existing Genetic Variance as a Source of Genetic Variability
Definition
1.) Choose chromosomes with "normal" viability, pair them, and let them recombine
2.) Make recombinant chromosomes homozygous: use marker stocks combining dominant marker and recessive lethal and measure viability
3.) Determine how much of original variability in viability is generated by recombination among only 10 chromosomes

Research by Dobzhansky and colleagues
Term
Conclusion of Dobzhansky's experiment
Definition
Recombination is a major source of the genetic variability on which evolution is based
Term
Average Mutation Rate
Definition
The rate at which a genetic marker mutates or changes over time
Term
Mutually Exclusive events
Definition
When only one of several events can actually occur at any one time

Probability that one or another event will occur is obtained by adding the probabilities of the separate events
Term
Independent events
Definition
The occurrence of one event does not influence the occurrence of the other event

Probability that they will both occur is the product of the probabilities of the two events
Term
Assumptions of the Hardy-Weinberg Principle
Definition
*Random mating
*Large population size
*No natural selection
*No gene flow
*No mutation
Term
Chi Square Test Equation
Definition
Χ^2 = Σ (observed # - expected #)^2 / expected #
Term
p-value rejection parameters
Definition
If p < 0.05, the hypothesis of random mating is rejected. If p > 0.05, the hypothesis of random mating is retained.
Term
Work done by Wright, Fisher, and Malecot
Definition
Studied the inbreeding coefficient, f, which is defined as the probability that two alleles are identical by descent (IBD)
Term
Frequency of AA, AB, and BB under inbreeding
Definition
AA: p^2 + Fpq
AB: p^2 - 2Fpq
BB: q^2 + Fpq
Term
Advantages of Mixed Mating
Definition
Robert Allard showed that it was a very adaptive system

Outcrossing provides genetically variable plants, then self-fertilization copies the genotype for suitable environments
Term
Barriers to Gene Flow
Definition
Natural geographical barriers: mountains, rivers, deserts, etc.

Man-made barriers often interrupt migration among populations
Term
Three examples of gene flow:
Definition
Human ABO blood types in Asia and Europe
Corn gametes migrate only up to 30 or 50 feet
American oysters exchange genes by movement of gametes and larvae in sea water, but their movements are interrupted at the tip of Florida
Term
Who has a higher migration rate: males or females?
Definition
Females.

Patrilocality: the wife tends to move into her husband's natal household; the intercontinental migration of women is about 8 times that of men
Term
Frequency of homozygotes AA in a metapopulation
Definition
(Σi pi2) / n = p2
Term
What does F measure, and what does its size imply?
Definition
F = Fst = V/pq

This measures the loss of heterozygosity over the whole metapopulation.

Larger F means more fixation, which means more homozygosity.
Term
What factors affect the Fst value? How are number of migrants and fixation index related?
Definition
Reproductive capacity of the organism and the environment in which it lives.

Lower Nm gives higher Fst.
Term
What is the importance of Genetic Drift?
Definition
It introduces the element of chance to evolutionary theory; defines the evolutionary process as a combination of "chance and necessity"

Chance is largely drift, necessity is largely selection and gene flow.
Term
Who studied genetic drift, and when did they study it?
Definition
Studied in the 1920s and 1930s by R.A. Fisher and Sewall Wright
Term
Equation for Probability of Identity (Homozygosity)
Definition
F = 1/(1+4nu)

Heterozygosity = 1-F = Th/(1+Th), where Th = 4Nu
Term
What is Motoo Kimura famous for discovering?
Definition
He realized that drift could be important in very large populations.
Term
How can the time since divergence be estimated?
Definition
t = D/(2la) la = lambda = substitution rate

D = 2(la)(t)
Term
Cats and dogs' divergence?
Definition
56.89 mya
Term
Define I
Definition
I is the genetic identity between populations.

I = J12/[(J11)(J22)]^1/2
J12 = identity of alleles from the 2 populations
J11 = Identity of allele pairs from pop 1
J22 = identity of allele pairs from pop 2
Term
What are the distributions of genetic identity for groups of 1.) populations within the same species (C), 2.) species within the same genus (B), and 3.) genera within the same family (A)?
Definition
Genetic identity is greatest between populations of the same species (C), and is greater for species in the same genus (B) and even greater for genera in the same family (A).
Term
What is the molecular clock, and what does it do for science?
Definition
It is a concept of a steady rate of change in DNA sequences over time, and it provides the basis for dating the time of divergence of lineages, proving rate of change can be estimated.
Term
What are some techniques for constructing a phylogenetic tree?
Definition
UPGMA, parsimony, neighbor-joining, and maximum likelihood.
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