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Gavino 210 ICC
Chapter 3 and 4
131
Microbiology
Undergraduate 2
06/18/2013

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Cards

Term
3 Staining Methods
Definition
Gram Staining
Acid-Fast staining
Endospore Staining
Term
Differential Staining
Definition
-uses 2 or more stains to distinguish bacterial groups
Term
Simple staining
Definition
uses one stain to see the morphology
Term
Morphology
Definition
Shape, size and arrangement of cells
Term
Gram Staining steps and dyes used?
What color is positive and negative?
Definition
1. Application of crystal violet (primary stain)
2. Application of Iodine (mordant)
3. Alcohol wash (decolorization)
4. Application of safranin (counterstain)
-Purple= +
-Pink= -
Term
Acid Fast Staining steps and dyes used?
What color is positive and negative?
Definition
1. Application carbolfuchsin (primary stain)
2. Heat (mordant)
3. Acid Alcohol (decolorizer)
4. Methylene Blue (counterstain)
-Pink = +
-Blue = -
Term
Endospore Staining Steps and dyes used?
What color is positive and negative?
Definition
1. Application of Malachite Green (primary stain)
2. Heat (Mordant)
3. Safranin (Counter stain)
-Green = +
-Pink = -
Term
What are some structural characteristics of Gram Positive cell walls?
Definition
-think layer of peptidoglycan
-Wall teichoic acid
-Plasma membrane under layer of peptidoglycan
-Tetrapeptide side chain
-Peptide cross-bridge
Term
What are some structural characteristics of Gram Negative cell walls?
Definition
-Thin layer of peptidoglycan
-Outer layer of phospholipids
-lipoproteins
Term
Diplococcus
Definition
round cells arranged in twos
Term
Streptococcus
Definition
round cells arranged in chains
Term
Staphylococcus
Definition
round cells arranged in grape like clusters
Term
Diplobacillus
Definition
rod cells arranged in twos
Term
Streptobacillus
Definition
rod cells arranged in chains
Term
Ribosomes
Definition
made of small 70S proteins and rRna; sites for protein synthesis
Term
Cytoplasm
Definition
area inside the plasma membrane; contains 80% water
Term
Inclusions
Definition
used to store materials such as lipids, polysaccharide, phosphate
Term
Glycocalyx
Definition
slimy,sticky material made of polysaccharides and polypeptides; used by bacteria to attach onto surfaces (biofilm)
Term
Capsule
Definition
hardened glycocalyx used by bacteria for protection against phagocytes
Term
Neucleoid
Definition
made of DNA and contains most of the genes
Term
Plasmid
Definition
small, circular, self replicating DNA that may contain a few genes
Term
Fimbriae
Definition
many short hair like protein appendages used for attachment
Term
pilus
Definition
hair like protein appendage used to transfer DNA during conjugation
Term
flagella
Definition
protein filaments used for movement, have different arrangements
Term
axial filament
Definition
protein fibrils that spiral around a cell used for movement
Term
Plasma membrane
Definition
made of two layers of phospholipids and proteins that act as transporters, channels, receptors and enzymes
Term
3 Functions of Bacterial Plasma Membrane
Definition
1. Selective permeability
2. Bacteria contains enzymes to make energy ATP (ex. electron transport chain in the plasma membrane)
3.Photosynthesis
Term
Selective permeability
Definition
(semipermeable) allows certain molecules or ions to pass through the membrane; but others are prevented from passing through the membrane
Term
Chromophores and Thylakoids of plasma membrane
Definition
contain pigments and enzymes for photosynthesis in photosynthetic bacteria
Term
Passive Processes
Definition
do not require ATP because the substances move with their concentration gradient
Term
Concentration Gradient
Definition
an area of high concentration to an area of low concentration
Term
Simple Diffusion
Definition
substances move from an area of high concentration to an area of low concentration and do not require transporter proteins
Term
Facilitated Diffusion
Definition
need transporter proteins to move substances from an area of high concentration to an area of low concentration
Term
Active Process
Definition
Require ATP to move substances against their concentration gradient
Term
Active transport
Definition
require transporter proteins and ATP to move substances against the concentration gradient
Term
Group Translocation
Definition
substances are chemically altered during their transport through the membrane; need transporter proteins and ATP to move substances against the concentration gradient
Term
Solution
Definition
Solute dissolved in solvent
Term
Solute
Definition
a substance dissolved in another substance
Term
Solvent
Definition
a dissolving medium
Term
Osmosis
Definition
movement of water with its concentration gradient
Term
Osmotic pressure
Definition
the force needed to stop the flow of water across the membrane
Term
Cell lysis
Definition
occurs when the movement of water into the cell exceeds the ability of the plasma membrane to withstand the osmotic pressure
Term
True or False
Fungi are sensitive to osmotic pressure
Definition
False
Bacteria are sensitive to osmotic pressure and fungi are resistant to osmotic pressure
Term
What substances can damage the plasma membrane of bacteria?
Definition
Alcohol
Anitbiotic (polymyxin)
Detergent
Term
Why is the plasma membrane a good terget for antibiotic?
Definition
Atp is produced in the plasma membrane and if that is destroyed then the cell cannot function
Term
Gram negative cell wall....
Definition
Has a outer membrane made of lipoprotein which is harder to stain
Term
Gram positive cell wall....
Definition
Has a thicker layer of peptidoglygan and holds the primary stain better
Teichoic Acid
Term
Eukaryotic Animal cell
Plasma membrane
Definition
Phospholipids bilayer that controls transport of substances
Term
Eukaryotic Animal cell
Lysosomes
Definition
contains enzymes that can digest germs
Term
Eukaryotic Animal cell
Ribosomes
Definition
larger size involved in protein synthesis
Term
Eukaryotic Animal cell
Nucleus
Definition
contains DNA organized into chromosome pairs and histone proteins
Term
Eukaryotic Animal cell
Rough Endoplasmic Reticulum
Definition
membranous organelle involved in modifying proteins
Term
Eukaryote (Humans)
Plasma Membrane
Composition
Function
Definition
-Phospholipid bilayer, sterols
-transports substances
Term
Eukaryote (Humans)
Cell Wall
Composition
Function
Definition
Absent
Term
Eukaryote (Humans)
Ribosomes
Composition
Function
Definition
-Larger size
-protein synthesis
Term
Eukaryote (Humans)
Chromosomes
Composition
Function
Definition
-23 chromosome pairs (DNA)
-genes control cell function
Term
Eukaryote (Humans)
Membranous Organelles
Composition
Function
Definition
Mitochondria, Endoplasmic reticulum and lysosomes
Term
Eukaryote (Humans)
Cell Division
Composition
Function
Definition
Mitosis and Meiosis
Term
Prokaryote (Bacteria)
Plasma Membrane
Composition
Function
Definition
-phospholipid bilayer, proteins
-transports substances, energy production
Term
Prokaryote (Bacteria)
Cell Wall
Composition
Function
Definition
-peptidoglycan
-maintains shape, protection
Term
Prokaryote (Bacteria)
Ribosomes
Composition
Function
Definition
-Smaller size
-genes control cell function
Term
Prokaryote (Bacteria)
Membranous Organelles
Composition
Function
Definition
-Absent
Term
Prokaryote (Bacteria)
Cell Division
Composition
Function
Definition
Binary Fission
Term
Physical Growth Requirements
Definition
1. Temp
2. Oxygen
3. Chemical and Physical Requirements
Term
4 Groups of microbes classified by temperature
Definition
1. Mesophiles
2. Psychrotrophs
3. Thermophiles
4. Hyperthermophile
Term
Mesophiles
Definition
-moderate-temp loving, can grow from 10-48 degrees celcius
ex. human pathogens like body temp (37)
ex. grow in room temp (25)
Term
Psychrotrophs
Definition
can grow from 0-30 degrees celcius
ex bacteria that can spoil food in the refrigerator (5)
Term
Thermophiles
Definition
heat loving, can grow from 40-70 degrees celcius
Term
Hyperthermophile
Definition
hot temperature loving, can grow from 65-110 degrees celcius
ex. Archaea
Term
5 groups of microbes classified by the amounts of o2 needed
Definition
1. Facultate Anaerobes
2. Obligate Aerobes
3. Microaerophiles
4. Obligate Anaerobes
5. Aerotolerant Anaerobes
Term
Facultate Anaerobes
Definition
Prefer O2 but can survive without it
ex. E. coli
Term
Obligate Aerobes
Definition
require a lot of O2
Term
Microaerophiles
Definition
require very little O2
Term
Obligate Anaerobes
Definition
killed by O2
Term
Aerotolerant Anaerobes
Definition
Don't use O2 but can live with O2
Term
Organic Molecules
Definition
Carbohydrates, proteins, lipids, nucleic acids
Term
Nucleic acids
Definition
DNA, RNA, ATP
Term
Mineral elements
Definition
iron, copper, zinc
Term
7 Chemical and Physical Requirements of microbes
Definition
1. Carbon
2. Nitrogen
3. Sulfur
4. Phosphorus
5. Trace elements
6. Organic Growth Factors
7. pH
Term
Carbon
Definition
microbes need to make all kinds of organic molecules to form their cell structures, carbon is used as a source of energy
Term
Nitrogen
Definition
needed to make the organic molecules proteins and nucleic acids
ex. most is acquired from protein sources (food)
ex. nitrogen fixing bacteria get it from the atmosphere
Term
Sulfur
Definition
needed to make amino acids and vitamins
Term
Phosphorus
Definition
needed for microbes to make nucleic acids and the bilayer of the plasma membrane
Term
Trace Elements
Definition
mineral elements needed in small amounts for making cofactors of enzymes
Term
Organic Growth Factors
Definition
essential organic compounds from the environment
ex. vitamins, amino acids, purines and pyrimidines
Term
Purines
Definition
A and G Bases of DNA and RNA
Term
Pyrimidines
Definition
T, C, U Bases of DNA and RNA
Term
pH for Bacteria
Definition
Like neutral 6.5-7.5 pH
Term
pH for Fungi
Definition
molds and yeasts like acidic 5-6 pH
Term
Culture medium
Definition
nutrients prepared to grow microbes
ex. nutrient agar
Term
Sterile
Definition
contains no living microbes
Term
Inoculum
Definition
microbes introduced into a culture medium to initiate growth
Term
Culture
Definition
microbes growing in or on culture medium
Term
Pure culture
Definition
contains only one species or strain
Term
Colony
Definition
a visible mass of microbial cells that arose from a single cell, spore, or a group of attached cells
Term
Preserving Bacterial Cultures
Short term
Definition
Slows down metabolism
Term
Preserving Bacterial Cultures
Long Term
Definition
Totally stops metabolism for years
Term
Deep-freezing
Definition
Long term bacterial preservation
-in liquid nitrogen -50 to -95 decrees celcius
Term
Lyophilization
Definition
Long term bacterial preservation
-freeze drying dehydrate in a vacuum then freeze -54 to - 72 degrees celcius
Term
2 ways to obtain pure cultures
Definition
1. Pour Plate Method
2. Streak Plate Method
Term
Complex media
Definition
chemical composition varies slightly per batch
Term
Chemically Defined Media
Definition
the exact chemical composition is known
Term
Selective Media
Definition
suppress the growth of unwanted microbes and encourage the growth of the desired microbe
ex. sabourand agar has acidic pH5 for fungi
ex Mannitol Salt Agar for Staphylococcus aureus
Term
Differential Media
Definition
make it easier to distinguish colonies of desired microbe
ex. hemolytioc bacteria form halo on Blood agar and EMB agar
Term
Enrichment media
Definition
encourage the growth of a desired microbe
ex enrichment broth for staphylococcus
Term
Bacterial Growth Curve
Definition
1.lag phase
2.log phase
3.stationary phase
4.Death phase (log arithmic decline)
Term
lag phase
Definition
no cell dvision
Term
log phase
Definition
Exponential growth, optimum conditions
Term
Sationary phase
Definition
slower growth, new cells are produced at the same rate cells are dying
Term
Death phase
Definition
dying cells exceed new cell production
Term
Measuring Microbial Growth
4 Direct Methods
Definition
Plate count
Most Probable Number (MPN)
Direct Microscopic Count
Filtration
Term
Measuring Microbial Growth
3 indirect methods
Definition
Turbidity
Metabolic Activity
Dry Weight
Term
Plate Count
Advantage
Disadvantage
Definition
a common method for estimating the number of bacteria in a sample, assumes that each bacterial cell grows into a single colony
-counts only the number of living cells

-need a lot of materials to perform serial dilutions of a sample
-requires time for incubation

(Direct Method)
Term
CFU
Definition
colony forming units
Term
Most Probable Number (MPN)
Definition
a statistical estimation of bacterial count, this method is used when microbes won't grow on solid media
(Direct)
Term
Liquid differential media
Definition
uses lactose for broth for coliforms
for microbes that only grow in liquid
Term
Direct Microscopic Count
Advantage
Disadvantage
Definition
uses a special slide that can hold a measured volume of bacterial suspension
-a fast way of counting the number of cells

-requires a high concentration of cells in a sample
-does not work if the bacteria are motile
-counts living and dead cells
(direct)
Term
Filtration
Definition
bacteria are first sieved out onto the surface of a membrane filter then transferred to a culture medium and the CFUs are counted a useful method when the bacterial count is low
(direct)
Term
Turbidity
Definition
measures the level of cloudiness uses a spectrophotometer to measure the amount of light that passes through a suspension of cells
(indirect)
Term
Metabolic Activity
Definition
measures the amount of metabolic products such as acids gas and enzyme production
(indirect)
Term
Dry weight
Definition
used for filamentous organisms (fungi and algae) that can be grown, dried and weighed
(indirect)
Term
4 groups of organic molecules
Definition
Carbon, hydrogen, oxygen, and nitrogen
Term
atoms found in carbohydrates
Definition
Carbon, hydrogen, oxygen

2:1 hydrogen to oxygen
Term
atoms found in lipids
Definition
Carbon, Hydrogen and Oxygen
Term
monosaccharides
Definition
simple sugars
3-7 carbon molecules
Term
disaccharides
Definition
monosaccharides bonded in dehydration synthesis reaction and can be broken down by hydrolysis
Term
polysaccharides
Definition
10s or 100s of monosaccharides joined through dehydration synthesis
-not soluble in water
Term
simple lipids
Definition
fats, triglycerides
contain glycerol and fatty acids
Term
complex lipids
Definition
contain phosphorus, nitrogen, sulfur, carbon, hydrogen and oxygen
-glycerol and 2 fatty acid chains and a phospholipid group
Term
atoms found in proteins
Definition
Carbon Hydrogen Oxygen and Nitrogen
Term
Steroids
Definition
4 interconnected Carbon rings
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