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From Genes To Proteins
Biology 1201: Chapter 17
72
Biology
Undergraduate 1
10/16/2012

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Term
Gene Expression
Definition
The process by which information encoded in DNA directs the synthesis of proteins or, in some cases, RNAs that are not translated into proteins and instead function as RNAs.
Term
Transcription
Definition
The synthesis of a polypeptide using the genetic information encoded in an mRNA molecule.
Term
mRNA
Definition
A type of RNA, synthesized using a DNA template, that attaches to ribosomes in the cytoplasm and specifies the primary structure of a protein.
Term
Translation
Definition
The synthesis of a polypeptide using the genetic information encoded in an mRNA molecule.
Term
Ribosomes
Definition
A complex of rRNA and protein molecules that function as a site of protein synthesis in the cytoplasm.
Term
Primary Transcript
Definition
An initial RNA transcript from any gene.
Term
Triplet Code
Definition
A genetic information system in which a set of three-nucleotide-long words specify the amino acids for polypeptide chains.
Term
Template Strand
Definition
The DNA strand that provides the pattern, or template, for ordering, by complementary base pairing, the sequence of nucleotides in an RNA transcript.
Term
Codons
Definition
A three-nucleotide sequence of DNA or mRNA that specifies a particular amino acid or termination signal.
Term
Reading Frame
Definition
On an mRNA, the triplet grouping of ribonucleotides used by the translation machinery during polypeptide synthesis.
Term
RNA Polymerase
Definition
An enzyme that links ribonucleotides into a growing RNA chain during transcription, based on complementary binding to nucleotides on a DNA template strand.
Term
Promoter
Definition
A sequence of DNA signaling the attachment site for RNA polymerase
Term
Terminator
Definition
In bacteria, a sequence of nucleotides in DNA that marks the end of a gene and signals RNA polymerase to release the newly made RNA molecule and detach from the DNA.
Term
Transcription Unit
Definition
A region of DNA that is transcribed into an RNA molecule.
Term
Start Point
Definition
In transcription, the nucleotide position  on the promoter where RNA polymerase begins synthesis of RNA.
Term
Transcription Factors
Definition

A regulatory protein that binds to DNA and affects transcription of specific genes.

 

Term
Transcription Initiation Complex
Definition
The completed assembly of transcription factors and RNA polymerase bound to a promoter.
Term
TATA Box
Definition
A DNA sequence in eukaryotic promoters crucial in forming the transcription iniation complex.
Term
RNA Processing
Definition
Modification of RNA primary transcripts, including splicing out of introns, joining together of exons, and alteration of the 5' and 3' ends.
Term
Poly-A Tail
Definition
A sequence of 50-250 adenine nucleotides added onto the 3' end of a pre-mRNA molecule
Term
RNA Splicing
Definition
After synthesis of a eukaryotic primary RNA transcript, the removal of portions of the transcript (introns) that will not be included in the mRNA and the joining together of the remaining portions (exons).
Term
Introns
Definition
A noncoding, intervening sequence within a primary transcript that is removed form the transcript during RNA processing
Term
Exons
Definition
A sequence within a primary transcript that remains in the RNA after RNA processing
Term
Splicesome
Definition

 

A large complex made up of proteins and RNA molecules that splices RNA by interacting with the ends of an RNA intron, relasing the intron and joining the two adjacent exons.

 

Term
Ribozymes
Definition
An RNA molecule that functions as an enzyme, such as an intron that catalyzes its own removal during RNA splicing
Term
Alternative RNA Splicing
Definition
A type of eukaryotic gene regulation at the RNA-processing level in which different mRNA molecules are produced from the same primary transcript, depending on which RNA segments are treated as exons and which as introns.
Term
Domains
Definition
Proteins often have a modular architecture consisting of discrete structural and functional regions.
Term
tRNA
Definition
An RNA molecule that functions as a translator between nucleic adic and protein languages by carrying specific amino acids to the ribosome, where they recognize the appropriate codons in the mRNA
Term
Anticodon
Definition
A nucleotide triplet at one end of a tRNA molecule that base-pairs with a particular complementary codon on an mRNA molecule
Term
Aminoacyl-tRNA Synthetases
Definition
An enzyme that joins each amino acid to the appropriate tRNA.
Term
Wobble
Definition
Flexibility in the base-pairing reules in which the nucleotide at the 5' end of a tRNA anticodon can form hydrogen bonds with more than one kind of base in the third position (3' end) of a codon
Term
rRNA
Definition
RNA molecules that, together with proteins, make up proteins, make up ribosomes
Term
P Site (Peptidyl-tRNA Binding Site)
Definition
Holds the tRNA carrying the growing polypeptide chain
Term
A Site (Aminoacyl-tRNA Binding Site)
Definition
Holds the tRNA carrying the next amino acid to be added to the chain
Term
E Site (Exit Site)
Definition
Discharges tRNAs
Term
 Polyribosomes
Definition
A group of several ribosomes attached to, and translating, the same messenger RNA molecule
Term
Signal Peptide
Definition
A sequence of about 20 amino acids at or near the leading (amino) end of a polypeptide that targets it to the endoplasmic reticulium or other organelles in a eukaryotic cell
Term
Signal-Recognition Particle (SRP)
Definition

A protein-RNA complex that recognizes a signal peptide as it emerges from a ribosome and helps direct the ribosome to the endoplasmic reticulum (ER) by binding to a receptor protein on the ER

 

Term
Mutations
Definition
A change in the nucleotide sequence of an organism's DNA or in the DNA or RNA of a virus
Term
Point Mutations
Definition
A change in a single nucleotide pair of a gene
Term
Nucleotide-Pair Substitution
Definition
A type of point mutation in which one nucleotide in a DNA strand and its partner in the complementary strand are replaced by another pair of nucleotide.
Term
Silent Mutation
Definition
A nucleotide-pair substitution that has no observable effect on the phenotype
Term
Missense Mutations
Definition
A nucleotide-pair substitution that results in a codon that codes for a different amino acids
Term
Nonsense Mutations
Definition
A mutation that changes an amino acid codon to one of the three stop codons, resulting in a shorter and usually nonfunctional protein.
Term
Insertion
Definition
A mutation involving the addition of one or more nucleotide pairs to a gene.
Term
Deletion
Definition
A mutational loss of one or more nucleotide pairs from a gene
Term
Frameshift Mutation
Definition
A mutation occurring when nucleotides are inserted in or deleted from a gene and the number inserted or deleted is not multiple of three resulting in the improper grouping of the subsequent nucleotides into codons.
Term
Mutagen
Definition
A chemical or physical agent that interacts with DNA and can cause a mutations
Term
DNA --> RNA
Definition

Transcription

Uses RNA Polymerase

Term
RNA --> Protein
Definition
Translation
Term
Genes
Definition
Segments of DNA that code for a particular function or character
Term
Transcription: Eukaryotes
Definition

*In nucleus

- DNA is transcribed into pre-mRNA

- Pre-mRNA is "processed" into mRNA

*In Cytoplasm

- mRNA leaved the nucleus and moves to cytoplasm

- mRNA is translated into polypeptides by ribosomes

Term
Transcription: Prokaryotes
Definition

*No nucleus

DNA is transcribed to mRNA

Then immediately translated to protein by ribosomes

Term
Translation and Transcription (Location)
Definition

Translation: Cytoplasm

Transcription: Nucleus

Term
Review of RNA
Definition

 

 

Nucleic Acid like DNA, except:

1.) Single Stranded

2.) Consists of: Ribose (With an extra O2 moleculeat the 2' position)

3.) Uses U instead of T

 

 

 

Term
Types of RNA (3)
Definition

mRNA

tRNA

rRNA

Term
DNA Replication
Definition

Production of more DNA

Uses enzymes DNA Polymerase

Term
How many nucleotide genes are required to code 300 amino acid peptide?
Definition
900 Nucleotide Genes
Term
The Universal Code
Definition

A triplet code means there are 64 codons

- (4 Bases)3 = 64

20 required codons (only 20 amino acids)

- many codons are duplicated

There are start and stop codons

Term
Genome
Definition
The whole DNA or RNA
Term
Reading Frame Process
Definition

Normally doesn't overlap

Small organisms overlap

If ther are mutations everything gets shifted (frame shift mutation)

Term
Elongation
Definition
RNA Polymerase adds nucleotides to complement the DNA template
Term
Termination
Definition
RNA Polymerase separates from DNA
Term
A DNA sequence is transcribed in the
Definition
5' --> 3' direction
Term
RNA and DNA are synthesized
Definition
5' --> 3'
Term
DNA polymerase recognizes and binds to the promoter in
Definition
Prokaryotes (Bacteria)
Term
Bacteria have ___ kind of RNA Polymerase.
Definition
1
Term
Promoter and transcription factors are required to initiate transcription in
Definition
Eukaryotes
Term
Eukaryotes have ____ kinds of RNA Polymerase
Definition
3
Term
__________ transcribes mRNA in eukaryotes.
Definition
RNA Polymerase II
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