Shared Flashcard Set

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Final Practical
Virology, Immunology, Serology & Molecular Diagnostics
100
Microbiology
Graduate
04/09/2013

Additional Microbiology Flashcards

 


 

Cards

Term
What is the purpose of viral transport media?
Definition
The purpose of viral transport media is to keep the human cell culture alive in order to support the virus and keep it alive for identification
Term
What is contained in the viral transport media?
Definition
The transport media contains proteins, sugars and salts to keep the cells alive.
Term
How does a shell vial differ from a cell culture used in diagnostic virology?
Definition
The shell vial differs from the cell culture in that the shell vial is a mixture of the cell culture and immunofluorescence. The shell vial contains a layer of cell line at the bottom, and it allows for rapid ID via immunofluorescence by utilizing a high speed centrifuge to increase the rate of viral attachment.
Term
In latex agglutination testing, what coats the latex particles?
Definition
In latex agglutination an antibody or an antigen can coat the latex particle, it depends whether you are searching for an antibody or an antigen
Term
detection molecule in ELVIA
Definition
Beta galactosidase
Term
detection molecule in EIA/ELISA
Definition
chromogen
Term
detection molecule in IFA/DFA
Definition
monoclonal antibody with fluorescent molecule attached
Term
detection molecule in Chemilluminescence
Definition
luminol
Term
detection molecule in Amplification techniques
Definition
fluorescence, luminal, radioactive material, or chromagens
Term
5. A patient has a positive HIV screen. The western blot confirmatory test was negative. What may have caused this discrepancy
Definition
The western blot could have been negative because the patient hasn’t seroconverted yet, or the western blot was searching for HIV 2 and you were testing with an HIV 1 sample
Term
An HIV RNA PCR test is ordered for the patient. What additional information will the molecular test give the physician?
Definition
The PCR will give the physician information about viral load or the amount of virus present.
Term
What is Latex Agglutination
Definition
Qualitative and semiquantitative w/end point titres on Serum
Term
ASO – anti-streptolysin O latex agglutination for?
Definition
Group A strep detection
Term
Cryptococcal Antigen Latex Agglutination on which type of specimen?
Definition
CSF or serum
Term
Monospot (EBV) Latex Agglutination for?
Definition
Heterophile Ab
Term
What is Flocculation?
Definition
Clumping of visual charcoal particles
Term
RPR – Rapid Plasma Reagin Ab test on and for?
Definition
Plasma or serum Screening test for syphilis
Term
VDRL – Venereal Disease Research Laboratory on?
Definition
CSF
Term
EIA is a..
Definition
Ag-Ab chromogen reaction on nitrocellulose strip
Term
EIA with what sample?
Definition
NP Wash or Swab
Term
Pneumococcal Ag test on which sample?
Definition
Serum or CSF
Term
Legionella Ag on which sample?
Definition
Urine
Term
Mycoplasma pneumoniae testing for what antibody in which specimen?
Definition
IgM in Serum
Term
Rapid Influenza A&B on which specimen?
Definition
NP wash or swab
Term
Rapid HIV (EIA) on which specimen?
Definition
Serum or whole blood
Term
ELISA can be
Definition
automated or manual with spec used for C. diff toxin
Term
DSX can test for?
Definition
Mumps, Measles, Rubella, VZV, EBV, CMV, Herpes, Toxoplasma (serum)
Term
chemilluminescence
Definition
Luminol when mixed with oxidizing agent
Term
As electrons return to their ground state...
Definition
excess energy is liberated as a photon of visible blue light
Term
chemilluminescence measured on
Definition
photometer
Term
Hepatitis chronic panel
Definition
1. Hep BSAg
2. Hep C Ab
Term
Hepatitis acute panel
Definition
1. Hep BSAg
2. Hep C Ab
3. Hep A IgM
4. Hep BC IgM
Term
HBsAG -, anti-HBc -, anti-HBs - =
Definition
susceptible to hep B infection
Term
HBsAG -, anti-HBc +, anti-HBs + =
Definition
immune from past infection
Term
HBsAG -, anti-HBc -, anti-HBs + =
Definition
immune from hep B vaccination
Term
HBsAG +, anti-HBc +, IgM anti-HBc +, anti-HBs - =
Definition
acute infection
Term
HBsAG +, anti-HBc +, IgM anti-HBc -, anti-HBs - =
Definition
chronic infection
Term
HBsAG -, anti-HBc +, anti-HBs + =
Definition
(1) recovering from acute (2) immune and anti-HBs not detectable (3) susceptible to false-positive anti-HBc or (4) chronically infected and HBsAG not detectable
Term
HIV Ab screen can be done via
Definition
ELISA, rapid EIA or Chemilluminescence
Term
HIV & West Nile Confirmatory Test
Definition
western blot
Term
Immunofluorescence can be
Definition
direct or indirect
Term
FTA – Fluorescent Treponema Antibody confirms
Definition
RPR
Term
Respiratory Panel contains
Definition
Adenovirus, Influenza A&B, Para influenza 1,2 & 3, RSV
Term
Phenotypic
Definition
unique physical characteristics that can be observed
Term
Immunologic
Definition
unique antigens
Term
Serologic
Definition
indirect identification targeting unique antibodies
Term
Molecular
Definition
unique nitrogenous base sequences
Term
Watson & Crick - 1953
Definition
Molecular Structure of Nucleic acids
Term
Kary Mullis - 1983
Definition
PCR (Polymerase Chain Reaction)
Term
Steps in PCR (5)
Definition
Extraction
Denaturation
Primer anneal
Extension
Detection of products
Term
PCR amplification in a
Definition
thermal cycler
Term
Real-time polymerase chain reaction
Definition
amplify and simultaneously quantify a targeted RNA or DNA sequence. The amplified DNA is detected as the reaction progresses in real time, a new approach compared to standard PCR, where the product of the reaction is detected at the end.
Term
Method for detection in Real Time-PCR
Definition
sequence-specific probes consisting of oligonucleotides labeled with a fluorescent reporter
Term
Abbreviations used for real-time PCR
Definition
RTQ-PCR, Q-PCR or qPCR
Term
Real-time reverse-transcription PCR is denoted as
Definition
qRT-PCR, RRT-PCR,or RT-rt PCR
Term
acronym RT-PCR commonly denotes
Definition
reverse-transcription PCR and not real-time PCR
Term
SDA
Definition
Strand displacement amplification
Term
NASBA
Definition
Nucleic acid sequence based amplification
Term
TMA
Definition
transcription mediated amplification
Term
LCR
Definition
Ligase chain reaction
Term
Cepheid Gene Xpert
Definition
PCR detection of MRSA from nasal swabs
Term
Hybridization Used for speciation of AFB
Definition
genprobe or labeled probe
Term
Frederick Sanger – The Nobel Prize in Chemistry 1980
Definition
DNA sequencing
Term
Human Genome Project
Definition
3 billion base pairs in 23 chromosomes
Only 1.5% of the human genome codes for proteins
2003
Term
Gene sequencing of Actinomycetes
Definition
Micro seq 500™
Term
HCV genotype testing is used to determine
Definition
required length and potential response to interferon-based therapy
Term
Microarray Technology
Definition
Chip w/oligonucleotide DNA probes
Intensity of hybridization is determine using imaging processing software
Term
Virion
Definition
complete viral particle comprised of genetic material & the capsid
Term
virus innfects cells by
Definition
lytic or latent
Term
structures of virus
Definition
enveloped, helical, icosohedral
Term
genome can be
Definition
ssRNA, dsRNA, dsDNA or ssDNA
Term
Positive sense 5’ – 3’
Definition
Viral RNA serves as mRNA
for translation
Term
Negative sense 3’ – 5’
Definition
Virus provides RNA polymerase to convert to positive sense RNA
Term
Rotavirus found in
Definition
stool
Term
enterovirus found in
Definition
stool CSF, NP or throat swab
Term
Respiratory panel done on
Definition
patient specimen or patient infected mixed cell line (r-mix)
Term
H glycoproteins
Definition
help attach
Term
N glycoproteins
Definition
help leave
Term
Syncytia
Definition
fusion of cells
Term
RSV
Definition
Respiratory Syncytial Virus
Term
RSV test
Definition
EIA
Term
oncovirus
Definition
triggers a cell to become cancerous, HIV
Term
seroconversion
Definition
indeterminate results
Term
JCV & BKV
Definition
Transplant patients
Term
JCV & BKV testing on
Definition
Urine, Plasma, CSF or Tissue
Term
BSL 4 organisms
Definition
Marburg Virus and Ebola Virus
Term
Prions
Definition
protein particles that can destroy nerve tissue
Term
Creutzfeldt-Jacobs Disease
Definition
mad-cow, caused by prion
Term
It is best to collect specimens for viral isolation during
Definition
first few days of illness, during the febrile, acute (IgM) period
Term
Blood for virus collection to
Definition
rule out viremia
Term
Indirect viral detection
Definition
2 antibodies
Term
SEM
Definition
scanning electron microscope
Term
TEM
Definition
transmission electron microscopy
Term
direct detection
Definition
EM
Term
examples of CPE
Definition
synica, inclusions, lysis, enlargement
Term
Direct - DFA
Definition
Tagged MCAb + Virus infected cell
Respiratory panel, CMV, HSV, VZV
Term
Indirect IF
Definition
Tagged Ab + MCAb + Virus infected cell
Term
Rapid cell culture w/fluorescent staining used on which vial with what virus
Definition
shell vial with CMV
Term
ELVIS
Definition
enzyme linked virus inducible system
Term
Whats in an ELVIS
Definition
Hamster Kidney Cells w/Beta galactosidease gene
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