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Exam II
Biogeography & deep earth history/history of life/molecular evolution 3 domains
37
Biology
Undergraduate 1
02/17/2010

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Term
Uniformitarianism
Definition
deeper fossils means older than fossils above
closer to top: fossils more similar to species to-date
Term
Protobiont
Definition
precursor to prokaryote, aggregates of abiotic that are non-reproducing but maintain internal chemical environment that differ from environment
Term
Stanely Miller Experiment
Definition
simulate primitive earth atmosphere in an attempt to make organic molecules from inorganic molecules. (not accurate)

amino acids, carbohydrates
Term
3 Life Characteristics
Definition
1. characterized by accurate replication/genetic continuity
2. cell structure: membrane separates genome from environment
3. metabolism
Term
Cyanobacteria/Stromatolites
Definition
earliest fossils, photosynthetic organisms thought to have changed the atmosphere to have Oxy abundance
Term
Endosymbiosis- Give Examples
Definition
the relationship between to organisms, one of which lives in the other.

ex. Mitochandria, Chloroplasts, nitrogen-fixating bacteria in roots of plants (dependent of N2 for growing)
Term
Trilobites
Definition
well-known fossil group of extinct marine anthropods during early Cambrian epoch
Term
Enrichment Cultures-What is it for?
Definition
Method for identifying bacteria/archaea
-specific growing conditions to maximize growth rate AKA culturing
Term
Direct Sequencing-What is it for?
Definition
Method for identifying bacteria/archaea -lyse cell, extract specific sequence via PCR, compare to data base. no matches? NEW SPECIES
Term
1.Thermophiles, 2.Halophiles, 3.Sulfate Reducers, 4.Methanogens
Definition
eXtreme bacteria 1. heat loving 2. salt loving 3. H2S by-product of cellular respiration 4. CH4 by-product of cellular respiration
Term
Monophyletic Group
Definition
ancestral population and all descendants
Term
Autotrophs vs. Heterotrophs
Definition
manufacture own building blocks via sunlight, photosynthesis "self feeders" vs. obtain building block compounds from other organisms "other-feeders"
Term
Oxygenic photosynthesis
Definition
species that use water as a source of electrons and have O2 as a biproduct
Term
Anoxygenic photosynthesis
Definition
by-products produce elemental S and Fe3+, O2 is rare
Term
Primary Producer
Definition
species that produces chemical energy by making organic compounds - photosynthesis
Term
Synapomorphies
Definition
derived traits that distinguish major monophyletic groups
Term
Slip Fault
Definition
moving of tectonic plates moving along one another. Generally moves 1 inch per year in JERKING movements
Term
Divergent vs. Convergent Plate Movement
Definition
Divergent moves plates apart creating oceans. Convergent moves plates together creating mountain ranges.
Term
Disjunct Distribution
Definition
+2 groups closely related but live far away from each other explained by plate tectonics
Term
Fauna
Definition
all life during specific time
Term
Mass Extinction (specific time periods)
Definition
Greatly increased biodiversity of today.
-Cretaceous 65 mya 35% lost
-Triassic 268 mya 80% lost
-Permian 245 mya 95% lost
Term
Background Extinction
Definition
the low level of extinction that occurs all the time
a natural process
Term
3 Processes which changed Composition of Early Atmosphere
Definition
1. Volcanic Activity- volcanoes spew out H2O vapors, CO2 and N2
2. Chemical Rxn- rain water + CO2 from carbonic acid trapped in rocks
3. Photosynthesis- contributor to O2 in atmosphere, consumes CO2
Term
Consequences of O2 in Early Atmosphere
Definition
1) Oxygen Catastrophe- MAJOR extinction even. Most species anearobic and O2 was toxic
b) Ozone Layer- protect from UV, absorbed/s significant amounts of UV radiation
Term
Vertical vs. Horizontal Transmission
Definition
Vertical: infection of eggs, seeds, embryos, babies-- in early development, passing from mother to child

Horizontal: between members of the same species that are not parent-child relationships
Term
Primary Endosymbiosis
Secondary Endosymbiosis
Definition
Primary: 1 free organism engulfs a bacterium and does noy lyse
Secondary: engulf 2nd bacterium, genome of engulfed becomes reduced and dependent
Term
Consequences of Interfering with gut community
Definition
1) Antibiotics: eradicate most bacteria in gut, hard to get back to normal
2) Hygenic conditions: not exposed to environment to gain bacteria
3) Association with Irritable Bowel Syndrome
4) Incorrect immune system development
5) Reduce digestive efficiency, metabolism, and obesity tendencies
Term
Osmotrohpy
Definition
herterotrophs that absorb nutrients
Term
Phagotrophy
Definition
heterotrophs that engulf another bacteria and lyse
Term
Plastid
Definition
any class of small organelles in the cytoplasm of plant cells containing pigments or food
Term
Basal Metabolic Rate
Definition
minimal amount of energy for a cell to say alive, generally measured by O2 consumption
Term
Fick's Law
Definition
-(Permeability of membrane)(Area)(concentration gradient)
Term
Cell Size Advantages
Definition
1) staying in 1 place and living in currents, food comes to them, not worrying about being displaced
2) large individuals increase resource base, they eat others and not eaten themselves
3) cell specialization
Term
Cell Size Disadvantages
Definition
O2 can not diffuse fast enough through large cell, have great metabolic demands
Term
Criteria for the 1st pre-biotic molecule?
Definition
1) all functions in cell must be encoded by a single type of molecule
2)individual polymer unites must be formed by natural organic chemistry
3) ability to encode information and in what direction
4) ability to catalyze its own replication
-ability to catalyze other rxns
Term
Isotope Dating
Definition
1/2 life, fossils, use of stable isotopes to date organisms
Term
Diapause
Definition
organism becomes dormant to protect it's self from extreme conditions. think Trees! and Rotifers
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