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Exam 3
Mar. 15- April 5
114
Biology
Undergraduate 1
03/17/2011

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Term
Isotopes
Definition
different forms of the same element. Have different number of NEUTRONS. This makes nucleus unstable.
Term
Radioactive decay is the process by which:
Definition
an unstable atomic nucleus loses energy by emitting ionizing particles or radiation
Term
What happens when you build a molecule with a radioactive element?
Definition
we can "trace" where the molecule is.
Term
Griffith
Definition
demonstrations of bacterial transformations. Discovered transforming factor
Term
Avery, McCarty and McLeod
Definition
transforming factor is separable
Term
Hershey and Chase
Definition
Transforming factor is DNA. Discovered that DNA is what provides genetic info
Term
Chargaff
Definition
Ratios of DNA within and b/w species. Determined that DNA composition varies from species to species but there is always an equal number of A & T and C & G bases.
Term
Watson and Crick
Definition
DNA structure. Built models of dbl helix (using W&Fs pic). Determined base pairs (AT and CG). Determined that pecific base pairing indicates a mechanism for copying genetic material.
Term
Wilkins and Franklin
Definition
Using x-ray crystallography W&F produced picture of DNA that showed shape (dbl helix) and the spacing of the nitrogenous bases. Also deduced that there were 2 anitparallel sugar-phosphate backbones, wit hthe nitrogenous bases paired in the molecules interior DNA structure
Term
Meselson and Stahl
Definition
semi-conservative replication.
Term
Everytime a cell divides _____ must be replicated.
Definition
DNA
Term
Who came up with the semiconservative model of DNA?
Definition
Watson and Crick
Term
Semiconservative model of replication
Definition
says when a dbl helix replicates, each daughter molecule will have one old strand (derived or "conserved" from the parent molecule) and one newly made strand
Term
Helicase
Definition
untwists the dbl helix
Term
Topoisomerase
Definition
relieves the strain of twisting caused by unwinding (breaks swivels and region bonds).
Term
Primase
Definition
makes a primer (a starting point) for synthesis of a DNA strand
Term
DNA Polymerase
Definition
polymerizes a new strand of DNA by adding nucleotides
Term
Ligase
Definition
ligates or joins together nucleic acids
Term
http://wps.aw.com/bc_campbell_biology_8/77/19957/5109208.cw/index.html
mastering bio, study area, ch 17, bioflix
Definition
Term
look at bottom of 15 march notes. Starting with page 5 DNA Replication initiation (find a suitable visual)
Definition
Term
DNA Replication begins at special sites called _______________________
Definition
origins of replication
Term
bubble
Definition
At the origins of replication, two DNA strands are separated, opening up a replication _____________
Term
copied
Definition
Replication proceeds in both directions from each origin, until the entire molecule is _______
Term
copied
Definition
Replication proceeds in both directions from each origin, until the entire molecule is _______
Term
copied
Definition
Replication proceeds in both directions from each origin, until the entire molecule is _______
Term
replication fork, new DNA strands are elonglated
Definition
At the end of each replication bubble is a ___________________, a y-shaped region where ____________________
Term
Definition
Antiparralled Elongation
Term
DNA polymerase
Definition
Enzymes called _____________ catalyzes the elongations of new DNA at a replication fork
Term
primer, DNA template strand
Definition
Most DNA polymerase require a ______ and a _____________
Term
500, 50
Definition
The rate of elongation is about _____ nucleotides per sec in bac and _____ per sec in human cells
Term
triphosphate
Definition
Each nucleotide that is added to a growing DNA strand is a nucleotide _______
Term
ATP of energy metabolism
Definition
dAPT for example, supplies adenine to DNA and is similaar to the ______________________
Term
dATP-deoxyribose
ATP- ribose
Definition
Difference in the sugars of dATP and ATP
Term
2 phosphate groups
molecule of pyrophosphate
Definition
As each monomer of dNTP joins the DNA strand, it loses __________ and a molecule of __________
Term
replication
Definition
The antiparallel structure of the dbl helix affects __________
Term
3', 5' to 3'
Definition
DNA polymerase add nucleotides only to the free __' end of a growing strand; therefore, a new DNA strand can elongate only in the __' to __' direction
Term
DNA polymerase, replication fork
Definition
Along one template strand of DNA, the ___________ synthesizes a leading strand continuously, moving towards the ____________
Term
Definition
Proofreading and Repairing DNA
Term
DNA Polymerase
Definition
___________ proofread newly made DNA, replacing any incorrect nucleotides
Term
mismatch repair, repair
Definition
in ____________ of DNA, _______enzymes correct errors in base pairing
Term
chemicals, radioactive emissions, x-rays, UV light, and certain molecules (in cigarette smoke for example)
Definition
List some ways in which DNA can be damaged:
Term
nucleotide excision repair
Definition
In _______________, a nuclease cuts out and replaces damaged stretches of DNA
Term
Definition
Replicating the ends of DNA molecules
Term
DNA polymerase
Definition
Limitations of _________ create problems for the linear DNA of eukaryotic chromosomes
Term
shorter DNA molecules
Definition
The usual replication machinery provides no way to complete the 5' ends so repeated founds of replication produce ________________
Term
telomeres
Definition
Eukaryotic chromosomal DNA molecules have at their ends nucleotide sequences called ____________
Term
ends of DNA molecules
Definition
Telomeres do not prevent the shortening of DNA molecules, but they do postpone the erosion of genes near the _____________
Term
aging
Definition
It has been proposed that the shortening of telomeres is connected to _____________
Term
essential genes would eventually be missing from the gametes they produce
Definition
What would happen if chromosomes of germ cells becaame shorter in every cell cycle?
Term
telomerase
Definition
an enzyme called ________ catalyzes the lengthening of telomeres in germ cells
Term
Definition
The Flow of Genetic Information
Term
nucleotides
Definition
The information content of DNA is in the form of specific sequences of ___________
Term
proteins
Definition
The DNA inherited by an organism leads to specific traits by dictating the synthesis of _______________
Term
genotype, phenotype
Definition
proteins are the link between __________ and ______________
Term
gene expression
Definition
_____________ is the process by which DNA directs protein synthesis
Term
Archibald Garrod
Definition
__________ first suggested that genes dictate phenotypes through enzymes that catalyze specific chemical reactions
Term
Beadle and Tatum
Definition
Using bread mold experiment they developed the one gene-one enzyme hypothesis (now called one gene one polypeptide hypo)
Term
Definition
Basic principles of transcription and translation
Term
RNA
Definition
is the intermediate b/w genes and the proteins for which they code
Term
transcription
Definition
____________ is the synthesis of RNA under the direction of DNA
Term
mRNA
Definition
Transcription produces _______
Term
polypeptide
Definition
Translation is the synthesis of a _______
Term
ribosomes
Definition
__________ are the sites of translation
Term
translated w/o more processing
Definition
in prokaryotes mRNA produced by transcription is immedietly is immedietly _________________
Term
nuclear envelope
Definition
In an uekaryotic cell, the _____________ separates transcription from translation
Term
RNA processing
Definition
Eukaryotic transcripts are modified through ______________ to yield finished mRNA
Term
primary
Definition
A ______ transcript is the initial RNA transcript for any gene
Term
Definition
The Genetic Code
Term
codon
Definition
A three-nucleotide sequence of DNA or mRNA that specifies a particular amino acid or termination signal; the basic unit of the genetic code
Term
Template strand
Definition
During transcription, one of the two DNA strands called the _________ provides a template for ordering the sequence of nucleotides in an RNA transcript.
Term
codon, 5, 3
Definition
Diring translation, the mRNA base triplets, called _________ are read in the __' to __' direction
Term
amino acid, polypeptide
Definition
each codon specifies the ________ amino acid to be placed at the corresponding position along a _________
Term
translpation machinery
Definition
codons along an mRNA molecule are read by ____________
Term
20
Definition
each codon specifies the addition of one of __ amino acids
Term
Definition
Cracking the codon code
Term
64
Definition
are are __ codons
Term
61, 3
Definition
__ code for Amino acids, __ triplets are "stop" signals to end translation
Term
false. Codons are redundant but not ambiguous
Definition
True or false. A codon specifies more than one Amino acid
Term
true
Definition
True or false. Genes can be transcribed and translated after being transplanted from one species to another
Term
RNA polymerase
Definition
RNA synthesis is catalyzed by ____________, which pries the DNA strands apart and hooks together the RNA nucleotides
Term
U, T
Definition
RNA synthesis follows the same base-pairing rules as DNA, except __ substitues for __
Term
promoter, terminator
Definition
The DNA sequencce where RNA polymerase attaches is called the __________; in bacteria, the sequence signalling the end of transcription is called the _______
Term
transcription unit
Definition
The stretch of DNA that is transcribed is called a _____________________
Term
Definition
Three stages of transcription
Term
RNA synthesis, RNA polymerase, transcription initiation complex, TATA box
Definition
1. Initiation.
prromoters signal the initiation of ________. Transcription factors mediate the binding of ____________ and the initiation of transcription. the completed asembly of transcription factors and RNA polymerase II bound to a promoter is called a _____________. A promoter called a _______ is crucial in forming the initiation complex in eukaryotes
Term
10, 20, 40, RNA polymerases
Definition
2. Elongation
As RNA polymerase moves along the DNA, it untwists the dbl helix, __ to __ bases at a time. Transcription progresses at a rate of __ nucleotides per sec in eukaryotes. A gene can be transcribed simultaneously by sev ___________
Term
bacteria, eukaryotes
Definition
3. Termination
The mechanisms of termination are different in Bacteria and eukaryotes.
In bacteria/eukaryotes (pick one) the polymerase stops transcription at the end of the terminator.
In bacteria/eukaryotes (pick one) the polymerase continues transcription after the pre-mRNA is cleaved from the growing RNA chain; the polymerase eventually falls off the DNA
Term
Definition
Eukaryotic cells modify RNA after transcription
Term
pre-mRNA, cytoplasm
Definition
Enzymes in the eukaryotic nucleus modify _______ before the genetic msgs are dipatched to the __________
Term
both
Definition
During RNA processing, one/both ends of the primary transcript are usually altered
Term
Definition
Alteration of mRNA ends
Term
Definition
Each end of a pre-mRNA molecule is modified in a particular way
Term
modified nucleotide 5' cap
Definition
The 5' end recieves a ____________________
Term
poly-A tail (50-250 adenine nucleotides)
Definition
The 3' end gets a __________________
Term
mRNA, hydroltyic enzymes, 5
Definition
These Modifications share several fxns
1. the seem to facilitate the export of _____
2. they protect mRNA from ____________
3/ They help ribosomes attach to the __' end
Term
Definition
Introns, Exons, and Splicing
Term
introns
Definition
Most Eukaryotic genes and their RNA transcripts have long noncoding stretches of nucleotides that lie b/w coding regions. The noncoding regions are called interveining sequences or ______
Term
exons
Definition
The other introns are called ____ b/c they are eventually expressed, usually translated, into amino acid sequences
Term
introns, exons
Definition
RNA splicing removes introns/exons and joins introns/exons, creating an mRNA molecule with a continuous coding sequence
Term
spliceosomes
Definition
in some cases RNA splicing is carried out by __________. Slpiceosomes consist of a variety of proteins and sev sm. nuclear snRNPs that recognize the splice sites
Term
ribozymes
Definition
_______ are catalytic RNA molecules that fxn as enzymes and can splice RNA
Term
functional, hydrogen
Definition
Three Properties of RNA that enable it to fxn as an enzyme:
1. it can form a 3D structure b/c of its ability to base pair with itself
2. Some bases in RNA contain ______ groups
3. RNA may ________ bond with other nucleic acid molecules
Term
Definition
Introns
Term
exons
Definition
Some genes can encode for more than one kind of polypeptide, depending on which segments are treated as ________ during RNA splicing
Term
alternative RNA splicing
Definition
Such variations are called ____________
Term
proteins, genes
Definition
b/c of alternative splicing, the number of different ________ an organism can produce is much greater that its number of _______
Term
domains
Definition
Proteins often have a modular architecture consisting of discrete regions called _________
Term
exons
Definition
In many cases, different _____ code for the different domainss in a protein
Term
shuffling
Definition
exon ______ may result in the evolution of new proteins
Term
Definition
Synthesis of a Polypeptide
Term
tRNA
Definition
A cell translates an mRA message into protein with the help of ______
Term
amino acid, anticodon
Definition
Each tRNA molecule carries a specific _________ on one end and a _______ on the other
Term
cloverleaf
Definition
tRNA molecule resembles a ________
Term
hydrogen, L
Definition
Shape:
b/c of _____ bonds, tRNA twists and folds into a 3D molecule. It is roughly __-shaped
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