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EXAM 3
laipis
59
Biochemistry
Graduate
10/30/2010

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Term
Cyclin
Definition
Cyclins are a family of proteins that control the progression of cells through the cell cycle by activating cyclin-dependent kinase (Cdk) enzymes.their concentration varies in a cyclical fashion during the cell cycle; they are produced or degraded as needed in order to drive the cell through the different stages of the cell cycle.
Term
Cdk
Definition
Term
ARS
Definition
Term
ORC
Definition
Term
MCM
Definition
Term
cdc6
Definition
Term
cdc45
Definition
Term
cdt1
Definition
Term
cdc mutants
Definition
Term
pol alpha, pol delta, pol epsilon
Definition
Term
PCNA
Definition
Term
RPA
Definition
Term
RFC
Definition
Term
nucleosome
Definition
Term
telomere
Definition
Term
telomerase
Definition
Term
tert
Definition
Term
t-loops
Definition
Term
histone chaperones
Definition
Term
T-antigen
Definition
Term
BER
Definition
Term
NER
Definition
Term
Xeroderma pigmentosa
Definition
Xeroderma pigmentosum, or XP, is an autosomal recessive genetic disorder of DNA repair in which the ability to repair damage caused by ultraviolet (UV) light is deficient.xeroderma pigmentosum is an autosomal recessive genetic defect in which nucleotide excision repair (NER) enzymes are mutated, leading to a reduction in or elimination of Nucleotide Excision Repair.
Term
Ape1
Definition
Apurinic / apyrimidinic endonuclease (Ape1) is responsible for the incision of DNA basic sites during base excision repair.
Term
Fen1
Definition
Flap endonuclease 1 is an enzyme that in humans is encoded by the FEN1 gene.The protein encoded by this gene removes 5' overhanging flaps in DNA repair and processes the 5' ends of Okazaki fragments in lagging strand DNA synthesis. Direct physical interaction between this protein and AP endonuclease 1 during long-patch base excision repair provides coordinated loading of the proteins onto the substrate, thus passing the substrate from one enzyme to another.
Term
XP-F, XP-G
Definition
Term
MLH
Definition
Term
MSH, PMS
Definition
Term
DNA PK
Definition
DNA activated protein kinase.
Term
Ku80/Ku70
Definition
Term
Heavy Strand
Definition
Term
Light Strand
Definition
Term
D-loop
Definition
Term
RT
Definition
Term
RNAase H
Definition
RNase H is a non-specific endonuclease and catalyzes the cleavage of RNA via a hydrolytic mechanism.RNase H’s ribonuclease activity cleaves the 3’-O-P bond of RNA in a DNA/RNA duplex
Term
integrase
Definition
Retroviral integrase (IN) is an enzyme produced by a retrovirus (such as HIV) that enables its genetic material to be integrated into the DNA of the infected cell.
Term
LTR
Definition
Term
pro-virus
Definition
A provirus is a virus genome that has integrated itself into the DNA of a host cell. One kind of virus that can become a provirus is a retrovirus. When a retrovirus invades a cell, the RNA of the retrovirus is reverse-transcribed into DNA by reverse transcriptase, then inserted into the host genome by an integrase.
Term
terminal protein
Definition
Term
inverted repeats
Definition
Term
hairpin ends
Definition
Term
promoter
Definition
Term
enhancer
Definition
Term
monocistronic
Definition
Term
Exon
Definition
Term
Intron
Definition
Term
PolyA
Definition
Term
hypersensitive site
Definition
Regions of DNA that have lost their nucleosomal character.
Term
HAT
Definition
Term
HDAC
Definition
Term
SWI/SNF
Definition
This is the chromatin remodeling complex that is involved in opening chromatin and making genes more available for transcription.
Term
transcription factor
Definition
General term for any protein, other than RNA pol, that is required to initiate or regulate transcription in eukaryotic cells. General factors, required for transcription of all genes, participate in the formation of the pre-initiation complex. Specific factors, like activators or repressors stimulate or inhibit transcription of specific genes by binding to their regulatory sequences.
Term
enhancesome
Definition
Term
CTD
Definition
Term
cap
Definition
Term
GC island
Definition
Term
epigenetics
Definition
Term
imprinting center
Definition
Term
XIST
Definition
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