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Exam 2
BIOS 1500
164
Biology
Undergraduate 2
01/28/2013

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Term
Prokaryotes
Definition
Ex) Bacteria, Archaea
Genetic material in the nucleoid(no nucleus), cytoplasm, plasma membrane, cell wall, fibers, ribosomes, no membrane bound organelles
Term
Eukaryotes
Definition
Nucleus-DNA inside, Exhibit compartmentalization, have membrane bound organelles
Term
Structures specific to Prokaryotes
Definition
Pili, Flagella
Term
Pili
Definition
tubular; used for attaching to one another and transfer of genetic material (drug resistance)
Term
Flagella
Definition
present in some prokaryotes, used for locomotion (swimming action), rotary motion propels the cell
Term
What are Ribosomes made of?
Definition
RNA and protein
Term
What is the function of RNA?
Definition
Make protein
Term
Where can Ribosomes be found?
Definition
In all living things (Prokaryotes/Eukaryotes)
Term
Genome
Definition
all the genetic information of an organism. Every cell has the same genetic material
Term
Proteome
Definition
proteins/gene products used w/in individual cells at specific time, under specific environments, developmental stages,etc.
Term
What is the percentage of genes that code for membrane proteins?
Definition
30%
Term
What kind of bilayer is the Fluid Mosaic Model made of?
Definition
Phospholipids
Term
Integral proteins
Definition
embedded in bilayer; some are transmembrane (span membrane)
Term
Peripheral proteins
Definition
attached to surface, easier to remove; bound non-covalently to face the cytosol
Term
Why is the model a Fluid Mosaic model?
Definition
Fluid because of phospholipids arranged in a bilayer; Mosaic because of globular proteins inserted (transmembrane) in the lipid bilayer and attached to the surface
Term
What affects membrane fluidity?
Definition
Warm temp. makes the membrane more fluid; saturated fatty acids make the membrane more rigid; unsaturated fatty acids make the cell more fluid
Term
How is the membrane fluidity handled in animals?
Definition
Cholesterol-help to stabilize the membrane
Term
How is the membrane fluidity handled in plants?
Definition
Starch
Term
How can the fluidity of a membrane be changed?
Definition
By adjusting the saturated/unsaturated fatty acids in the membrane
Term
The more saturated a membrane is the _____ it is
Definition
Less fluid
Term
What is the animal membrane helps to keep the membrane fluid?
Definition
Cholesterol
Term
Passive Diffusion
Definition
small, non-charge, non-polar, high to low concentration, no energy needed, no transport protein, gases (O2,CO2), ethanol, through bilayer
Term
Facilitated Diffusion
Definition
high to low concentration, no energy required, requires transmembrane protein channel or carrier (protein)
Term
Active Transport
Definition
against concentration gradient, from low to high, requires transmembrane protein, needs ATP or other energy
Term
Channel Proteins
Definition
polar interior allowing polar molecules to pass through, form an open passageway for the direct diffusion of ions or molecules across the membrane
Term
Carrie Proteins
Definition
bind to specific molecules to facilitate its passage, conformational change transports solute, principle pathway for the uptake of organic molecules
Term
Gated Channels in Facilitated Diffusion
Definition
open and close, how nerve fibers work
Term
Osmosis
Definition
Diffusion of water from a high solute concentration to a low solute concentration across a membrane
Term
Isotonic
Definition
equal water and solute concentration on either side of the membrane
Term
What happens to a membrane when placed in an isotonic solution?
Definition
Nothing happens
Term
Hypertonic
Definition
solute concentration is higher (water concentration is lower) on one side of the membrane
Term
What happens to a cell membrane when placed in a Hypertonic solution?
Definition
Water leaves the cell - cell shrinks
Term
Hypotonic
Definition
Solute concentration is lower (water concentration higher) on one side of the membrane
Term
What happens to a cell membrane when placed in a hypotonic solution?
Definition
Water rushes in the cell - cell gets larger
Term
What is moving in Osmosis?
Definition
Water
Term
Active Transport
Definition
from a lower concentration to a higher concentration, against gradient, requires energy (ATP), requires carrier proteins
Term
How is ATP used in Active transport?
Definition
Directly or indirectly to fuel energy transport
Term
Na/K pump
Definition
actively transport Na+ and K+ against their gradients by using the energy from ATP ACTIVE TRANSPORT, 3Na+ out for 2K+ in, sets up charged gradient
Term
Transmembrane gradient
Definition
concentration of a solute is higher on one side of a membrane than the other, all cells more + outside and more Na+, more K+ inside - maintained by the Na/K pump
Term
Endocytosis
Definition
vesicle pinches off of plasma membrane - vesicle moves content into cell
Ex) phagocytosis-large, pinnocytosis-small
Term
Phagocytosis
Definition
cell takes in particular matter (large)
Term
Pinnocytosis
Definition
cell takes in only fluid (smaller)
Term
Receptor Mediated
Definition
material imported attaches to binding protein that concentrates it, when the binding sites are filled a signal causes coated pits to break off into vesicle
Term
How does receptor mediated endocytosis work?
Definition
1)Receptor mediated endocytosis
2)Vesicles fuse w/endosome
3)Receptor returned to plasma membrane
4)Endosome fuses w/lysosome
5)Lysosomes digest LDL
Term
Exocytosis
Definition
vesicle fuses with plasma membrane - vesicle content going out of cell
Term
What is exocytosis used for in plants?
Definition
To export cell wall material
Term
What is exocytosis used for in animals?
Definition
To secrete hormones, neurotransmitters, digestive enzymes
Term
In vesicle transport for every endocytosis is there an exocytosis?
Definition
Yes. There is a balance between endocytosis and exocytosis.
Term
How is vesicle movement inside the cell similar to endo and exoctyosis?
Definition
Vesicle movement inside the cell is similar to endo and exoctytosis, because they do phagocytosis inside the cell and are able to do exoctyosis.
Term
Endosomes
Definition
product of fusion of multiple small vesicles, act to decide where the content and membranes will go in the cell, eventually fuse w/lysosomes and the content in digested but some vesicles are returned to the membrane prior to lysosomal fusion
Term
Lysosomes
Definition
single membrane organelle-function is digested, contain acid hydrolyses that perform hydrolysis, break down macromolecules to monomers
Term
Autophagy
Definition
form a vesicle around an organelle often a mitochondria so it fuses w/the lysosome and be digested
Term
How are worn out cell parts and large defective proteins gotten rid of?
Definition
Autophagy
Term
Low rates of what have recently been shown important in the aging process?
Definition
Autophagy
Term
What are the 3 double membranous organelles?
Definition
Nucleus, Mitochondria, and Chloroplast
Term
Peroxisomes/Microbodies
Definition
small organelles that have the enzyme catalase used to convert peroxide H2O2 into water safely
Term
Function of the Golgi Apparatus?
Definition
Sort vesicles
Term
Sections of the Golgi Apparatus
Definition
1) Cis face-closest to rER, formed by fusion of vesicles
2) Median face-movement of cis down the golgi (middle)
3) Trans face-furthest from ER, median becomes Trans
Term
sER (smooth ER)
Definition
1) Membrane site for steroids and phospholipids production
2) Lumen (inside)- detoxification drugs (liver) and Ca2+ storage in muscles
Term
rER (rough ER) functions
Definition
1) Makes membrane proteins (transmembrane)
2) Makes proteins for lysosomes, golgi
3) Makes proteins for export
Term
Where is the bilayer part of the plasma membrane made?
Definition
sER
Term
What happens in the Golgi apparatus for protein modification?
Definition
Sugars are added therefore the proteins are modified and sorted
Term
What supplies/replaces the plasma membrane during exocytosis?
Definition
The plasma membrane itself
Term
Steps in Protein Synthesis
Definition
1) Starts on FREE RIBOSOMES in cytosol
2) First few A.A. in peptide determine where the protein should be completed (signal peptide)
3) If peptide signals that the peptide goes into ER then ribosome moves to rER to complete protein
4) Protein ends up inside rER tube
Term
What determines if protein/ribosome goes to rER?
Definition
Signal peptide (first few A.A. in peptide)
Term
Where are the completed proteins located?
Definition
Inside the lumen of the rER
Term
Proteins for export, lysosomal proteins, and membrane proteins use what systems for transport?
Definition
rER and Golgi apparatus
Term
Glycosylation
Definition
(adding sugar) provides tag for sorting
Term
Where does sorting of Glycosylation take place?
Definition
Takes place in the Trans face of the Golgi apparatus that then forms vesicles that are for export or lysosomes
Term
Types of fibers in the Cytoskeleton?
Definition
Micorfilaments, Microtubules, Intermediate
Term
Microfilaments
Definition
made of actin, cell movement, present in all cells, muscles, cell movement, tracks for small vesicles
Term
Microtubules
Definition
made of tubulin, flagella/cilia, centriole, spindle, tracks for large vesicles and organelles
Term
Intermediate fibers
Definition
structural, wide variety of fibers
Term
Cell biology
Definition
study of individual cells and their interactions with each other
Term
Cell theory: contains three major parts
Definition
1) All living organisms are composed of one or more cells
2) Cells are the smallest units of life
3) New cells come only from pre-existing cells by cell division
Term
All cells have...
Definition
genetic material, cytosol, ribosomes, plasma membrane
Term
DNA...what is it's charge?
Definition
is negatively charged
Term
What do prokaryotes not contain?
Definition
membrane-bound DNA or organelles
Term
Examples of prokaryotes
Definition
Bacteria and archaea
Term
In a prokaryotic cell what is the Nucleoid region?
Definition
houses the genetic material
Term
What organelle do Prokaryotic cells contain for protein synthesis?
Definition
Ribosomes
Term
What is the cell wall like in Prokaryotic cells?
Definition
Rigid for supporting and protecting the membrane
Term
Pili
Definition
appendages that allow prokaryotes to attach to surfaces and to each other; can transfer genetic material and drug resistance
Term
Flagella
Definition
allow prokaryotes to move (motility)
Term
Glycocalyx
Definition
an outer viscous covering surrounding the bacterium (prokaryotes)
Term
Eukaryotes
Definition
contain a membrane-bound nucleus that contains genetic material/DNA; are much larger than prokaryotic cells
Term
Examples of eukaryotes
Definition
Animal cells, protists, fungi, plants
Term
What do eukaryotes have that helps to create membrane-bound organelles?
Definition
compartmentalization
Term
Lysosome
Definition
degradation of macromolecules by hydrolase enzymes
Term
What do lysosomes become if they pick up a substance that they cannot digest?
Definition
Residual bodies
Term
Ribosomes
Definition
site of polypeptide/protein synthesis; made of RNA and protein; are considered to be a part of the cytoplasm and the cytosol
Term
Golgi apparatus
Definition
site of modification, sorting and secretion of lipids and proteins
Term
Peroxisomes
Definition
also called 'microbodies'; where hydrogen peroxide is from dangerous free radicals of oxygen and broken down by catalase
Term
Mitochondria
Definition
site of ATP synthesis
Term
rER
Definition
site of protein sorting and secretion; rough because has ribosomes attached to the surface; flatter tubules than sER
Term
sER
Definition
site of detoxification and lipid and membrane synthesis; smooth because does not have ribosomes attached on surface; thinner/taller tubules that rER
Term
Sarcoplasmic Reticulum
Definition
a special type of sER
Term
Why should drugs be tested before and after they enter the sER?
Definition
to check toxicity levels and make sure that they're suitable
Term
Glyoxisomes
Definition
specific to plant cells to metabolize fats in seeds
Term
Cytoskeleton
Definition
structure and function; microtubules, intermediate filaments and microfilaments
Term
Endomembrane system
Definition
is in eukaryotic cells; includes golgi, lysosomes, endosomes, plasma membrane, rough and smooth ER; NOT peroxisomes
Term
Plasma membrane
Definition
lipid bilayer of phospholipids to protect cell; has proteins embedded in it
Term
Peripheral protein
Definition
on the surface of the phospholipid bilayer
Term
Example of a peripheral protein
Definition
Glycoproteins
Term
Glycoproteins
Definition
surface protein w/an attached sugar/carbohydrate
Term
What makes a membrane less fluid?
Definition
Saturated fats
Term
Transmembrane/integral protein
Definition
span (integrate) the entire membrane; globular proteins are an example
Term
Fluid Mosaic Model
Definition
idea that the plasma membrane is flexible; cholesterol in the membrane allows for some of this flexibility; saturated fats decrease fluidity
Term
Cytoplasm
Definition
region of the cell contained w/in the plasma membrane, includes the organelles and the fluid solution they are in (cytosol); does not include the nucleus
Term
Cytosol
Definition
the fluid part of the cytoplasm, not including the organelles; contains some enzymes
Term
Enzyme
Definition
a protein that accelerates the rate of a chemical reaction (a protein catalyst)
Term
Genome
Definition
all the genetic information of an organism
Term
Proteome
Definition
all the types and relative amounts of proteins made in a particular cell and under specific conditions
Term
Human microbiome
Definition
all of the microbes/prokaryotes that inhibit us; is affected by antibodies, which can sometimes kill off good, natural bacteria
Term
Double membrane organelles
Definition
contain two membranes; chloroplasts, Mitochondria, Nucleus
Term
Single membrane organelles
Definition
only contain one membrane; ER, endosome, Golgi apparatus, lysosome/peroxisome
Term
Facilitated diffusion
Definition
substances need assistance of a protein channel; does not use energy
Term
Channels
Definition
have a polar interior, so polar molecules like H2O can pass through; no binding actually happening
Term
Gated channels
Definition
can open and close; nerve fibers are an example
Term
Transport carrier protein
Definition
changes shape to transport a solute; is specific to certain molecules and binds to the actual molecule
Term
Passive diffusion
Definition
no help is needed; substances can pass freely through the lipid bilayer; flows down a gradient and does not use energy
Term
Active transport
Definition
needs energy in the form of ATP to go against a concentration gradient to move substances from low to high concentration
Term
Hypertonic
Definition
'greater than'; cells shrink in solution; low concentration of water, high concentration of solute outside the cell, so water rushes out
Term
Hypotonic
Definition
cels bursts; water rushes in because there is less water inside the cell
Term
Isotonic
Definition
same concentration on inside and outside of the cell
Term
Osmosis
Definition
the diffusion of water across a membrane; water moves from high to low concentration
Term
What substance is in the cell?
Definition
Na+ (sodium)
Term
What substance is on the outside of the cell?
Definition
K+ (potassium)
Term
Na+/K+ pump
Definition
3 Na+ out for every 2 K+ that move in
Term
Vesicle
Definition
is a fluid mosaic membrane sphere; has a short life-span
Term
Endocytosis
Definition
the process of forming a vesicle from the plasma membrane to engulf something (vesicle moves into a cell)
Term
Pinocytosis
Definition
cell 'drinking' or cell only takes in fluid
Term
phagocytosis
Definition
the cell takes in particulate matter, white blood cells
Term
receptor-mediated endocytosis
Definition
specific molecules are taken in after they bind to a receptor, enzyme, LDL, HDL, virus
Term
Receptors
Definition
transmembrane proteins that bind some material on outer surface; attaches to a binding protein
Term
Exocytosis
Definition
process of vesicle fusing with the plasma membrane; vesicles in the cytoplasm fuse with the cell membrane and release their contents to the exterior of the cel
Term
Endosomes
Definition
a product of fusion of multiple small vesicles; decide where the content and membranes will go in the cell; eventually fuse w/lysosomes to digest content, but some vesicles are returned to membrane prior to lysosomal fusion
Term
Autophagy
Definition
self-digestion; process of forming a vesicle around an organelle (like mitochondria) so it fuses w/the lysosome to be digested
Term
What are low rates of autophagy associated with?
Definition
shorter lifespan, because broken, defective pieces not destroyed
Term
Lysosomes
Definition
contain hydrolase enzymes for digestion; a single membrane organelle
Term
primary lysosome
Definition
inactive with neutral pH, but fuses w/an ensosome to create a hydrogen ion pump to create pH and become active
Term
Residual body
Definition
seen more in older cells; is a lysosome w/something inside it that cannot be digested, which causes a build up leading to diseases
Term
Lysosomal storage disorders
Definition
caused by a missing/defective enzyme (genetic) or environmental problem (like lysosome picks up a particle it cannot digest)
Term
Tay-Sachs disease
Definition
(genetic) recessive, Eastern European/Jews; brain lipids accumulate because of a missing enzyme that allows build up of residual bodies
Term
Asbestos
Definition
(environmental) carcinogen (cancer-causing); a mineral fiber substance accumulates in residual bodies because lysosome cannot digest the mineral
Term
Endomembrane system
Definition
moves vesicles between all part/organelles; golgi, lysosomes, endosomes, plasma membrane, rough and smooth ER
Term
What is the largest system in eukaryotic cells?
Definition
ER
Term
Rough ER
Definition
has ribosomes embedded on surface; protein sorting and synthesis of membrane proteins
Term
smooth ER
Definition
no ribosomes on the surface; lipid and membrane synthesis
Term
Cis space
Definition
the space right below the ER; closest to ER
Term
Trans space
Definition
the space below the cis space; farthest from ER and has vesicles bud off of it to go to golgi
Term
Lumen
Definition
the inner part of the tubular ER; stores Ca2+ in muscle, detox of foreign substances in liver and lungs
Term
Signaling sequence
Definition
the first few A.A. made in a protein that determines where the protein is destined to go
Term
Cytoskeleton
Definition
fiber network used to maintain shape and composition of the cell; allows for cellular, vesicle and chromosomal movement
Term
Microfilaments
Definition
made of actin protein and are the thinnest; used to pinch off vesicles and cytokinesis (cell division); altered in cancerous cells
Term
Intermediate fibers
Definition
a mixture of proteins
Term
Microtubules
Definition
made of tubulin protein and are the thickest; organize cells and contain centrioles and spindle fibers for cell division
Term
Centrosome
Definition
organizes cell
Term
spindle fibers
Definition
chromosome separation
Term
myosin
Definition
a motor protein that aids w/movement
Term
Golgi apparatus
Definition
stack of flattened, membrane-bounded compartments for sorting proteins for export to lysosomes or vesicles; can be thought of as the 'mail center' of the cell
Term
how is sorting done in the cis and trans faces?
Definition
by enzyme and receptor-mediated by vesicles
Term
What is added to vesicles in the cis and trans face?
Definition
specific sugars and lipids and proteins as receptors; like mannose to become lysosomes
Term
What are the steps that a cell goes through if the cell needs cholesterol?
Definition
Surface LDL receptors -> vesicles fuse to form an endosome -> vesicles fuse off to recycle receptor -> leftover endosome fuses with lysosome and digests extra LDL (lysosome leaves the cell through exocytosis to rid excess products)
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